Dbfetch
LOCUS NM_001272907 2780 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized nascent polypeptide-associated complex beta subunit (uncNacbeta), transcript variant C, mRNA. ACCESSION NM_001272907 VERSION NM_001272907.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2780) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2780) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2780) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2780) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2780) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2780) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2780) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2780) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2780) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2780) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2780) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2780) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2780) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2780) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2780) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2780) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2780) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2780) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2780) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2780) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2780) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 2780) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2780) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 2780) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 2780) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2780 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2780 /gene="uncNacbeta" /locus_tag="Dmel_CG11835" /gene_synonym="CG11835; Dmel\CG11835; uncNAC-beta" /note="uncharacterized nascent polypeptide-associated complex beta subunit" /map="21E2-21E2" /db_xref="FLYBASE:FBgn0031264" /db_xref="GeneID:33232" CDS 167..2554 /gene="uncNacbeta" /locus_tag="Dmel_CG11835" /gene_synonym="CG11835; Dmel\CG11835; uncNAC-beta" /note="CG11835 gene product from transcript CG11835-RC; CG11835-PC; uncNacbeta-PC" /codon_start=1 /product="putative nascent polypeptide-associated complex beta subunit, isoform C" /protein_id="NP_001259836.1" /db_xref="FLYBASE:FBpp0304619" /db_xref="GeneID:33232" /db_xref="FLYBASE:FBgn0031264" /translation="MNVEKLKRLQAQVRIGGKGTPRRKKKVMHQTAATDDKKLQSSLK KLSVSTIPGIEEVNIIKDDLTVIHFNNPKAQASLSANTFAVTGHGETRKVVEMLPDIL PQLGQETVVQLRMYANAMNSQKGAPGSGDGPLPAEEDDDVPLLVGDFDEVAKVEATKQ PVHEPKESAEIKAKDKQQQQPKKEQKQSAKVPETTNPSENPKEKQENKKGQAKNNKKG DPQTNKDKTNKSKDQAKGQPAPQANKETTQAAQALKQNPSKPAVQQKKDQVLAVDQKI EANGAIQKAQQPKPAETKSTDQKVEPKSAEKQVDKAKPIEQTKTKESKVEHPKPAQKQ LDQNTQAKPTAERSEAKPVVPTPEPQKSAPPAVQTLAQIVALPAEKPANEAVAAPKAE EQKKDSSGPAKVEPAITPSAPQPVTTAEPPKSALKQDSPPKSAPKQGSPPKNVPKQES PPQSAPKQDSPPKGAPKQDSPPKGAPKQDSPPKGAPKQDSAPQQKTPPPVKQEVAPAK QDEPPAKQDAPPAKQDAPVPVPEVIKTLAPEVPNVSQAPAQPQGQAALASEKPADAPK AIEEPKAAPKKESPPPTKPVTATVPVAPATPAEAPSPLAPSTPPSTPTSVPPSAATVT PPSPATVTPPSPAVVTPPQKQSAAPQAGIKKQEAGTKTKQQQPANKPQQPQKQPPGGA GGSAGPGGNKGVQKQPNPNAKPAVAPKPAQATPKPAAASPKASPNQTNPQQQQGKAAN KASPPKQTGPTGGQQKSAANASKATASPKSAASPKATSPKAGTPTNPASASGGPN" ORIGIN 1 gtggttccgc tggcggtggg cctgtgcact gcattcgtga tttcggccgt ggagttgcac 61 atcgtgtgtc tgtctgtggc tggccaaaag tgaggtgact tcttggccat tttatgtaat 121 atatatgcgg tagataacga gtccttctcc ccgaccagat ttcaacatga atgtggagaa 181 gctgaagcgt ctgcaggccc aggtccggat cggcggcaag ggcacgcccc gtcgaaagaa 241 gaaggtcatg caccagacgg cggccaccga tgacaagaag ctgcagagct cgctcaagaa 301 gctgtcggtg agcaccatcc cgggcatcga ggaggttaac ataatcaagg acgatctgac 361 cgtgattcac ttcaacaacc ccaaggcgca ggcctccctt tcggccaaca cctttgcggt 421 cacgggtcac ggcgagaccc ggaaggtggt cgaaatgctg cccgatatcc tgccccagct 481 gggccaggag acagtcgtcc agctgcggat gtatgccaat gccatgaaca gtcaaaaggg 541 ggcgccggga agcggagatg gacctctccc agcggaggag gatgacgatg ttcccttgct 601 cgttggcgat ttcgatgagg tggccaaggt ggaggcgacc aagcagccag tacatgagcc 661 aaaggaatct gcggagatca aagccaagga taagcagcag cagcagccta agaaggaaca 721 gaagcagtca gcgaaagtgc cggagacaac caatcccagc gagaatccca aagagaaaca 781 ggaaaataag aagggtcagg ccaaaaataa caagaagggt gatccacaga ccaacaagga 841 caagaccaat aaaagcaagg atcaggccaa gggtcagcct gctccccaag ccaacaagga 901 aacgacacag gctgcacaag ctctcaaaca gaatccttcg aagcccgctg tacagcagaa 961 aaaggatcaa gtgctcgcag ttgaccagaa gattgaagcc aacggtgcga ttcaaaaggc 1021 gcaacaacca aagcccgccg agaccaagtc cactgaccag aaagttgaac ccaaatcggc 1081 agagaagcag gtggacaagg ccaaacccat tgaacagacc aaaaccaaag agtccaaggt 1141 ggaacatccg aaaccagctc aaaagcaatt ggatcagaac actcaggcca aacccacggc 1201 ggagagaagt gaagctaagc cagtggtacc gacaccagaa ccccagaagt ccgctcctcc 1261 tgctgtccag actctcgccc agattgtggc tttgcctgcg gagaaaccag ccaatgaagc 1321 tgttgccgct cccaaagctg aggagcagaa aaaagactcg tctggtccag ctaaggtaga 1381 gccagcgatt actccatcgg caccacaacc agtcaccact gctgagccac ccaagagtgc 1441 tctcaaacag gactcacctc ctaagagcgc tcccaagcag ggatccccac cgaagaatgt 1501 tccaaaacag gaatcaccac cacagagtgc tcccaaacag gattccccac caaagggtgc 1561 tcccaaacag gattccccac caaagggtgc tcccaaacag gattcaccac caaagggtgc 1621 ccctaaacag gattcagcgc cacaacaaaa gactccacca ccagttaaac aggaagtagc 1681 accagctaag caggatgaac caccagctaa gcaggatgca ccaccagcta aacaggatgc 1741 accagttcca gttccagaag ttatcaaaac gctagcaccg gaagtcccca acgtttctca 1801 ggcacctgca caacctcagg gtcaggctgc tctcgcttct gaaaaaccag cggatgcgcc 1861 aaaggccatt gaggaaccga aggctgcacc caagaaggaa tcaccaccac ccacaaaacc 1921 agtgacggca acagttccgg tagcacctgc cactcctgct gaggcgccat ctcctctggc 1981 tccctccact ccgccatcga ctcccacctc ggtgccgccc tctgcagcga cagtgactcc 2041 tccatctccc gccacggtga ctcctccgtc gcctgctgta gttactccgc ctcagaaaca 2101 gtcggcggct ccccaagcgg gaatcaagaa gcaggaggca ggaacgaaga caaaacagca 2161 gcagccagcc aacaagcccc aacaaccgca aaagcagcca ccaggaggag caggaggatc 2221 agctgggcca ggagggaaca agggcgtgca gaaacagccg aaccccaatg ccaagccagc 2281 agttgctcca aagccggccc aggccactcc aaaacccgct gctgcttctc caaaagcatc 2341 ccccaaccag acgaatccac aacaacagca gggaaaagca gctaacaaag cgtctcctcc 2401 aaagcaaact ggaccaactg gggggcagca gaagtcggcg gcgaacgcct cgaaggccac 2461 agcctccccg aaatcggctg catccccaaa agccacctcc ccgaaggccg gaactcctac 2521 caatcctgct tccgcctctg ggggtcccaa ctgatcctcc ttcagtctat tttctaatcg 2581 gcgcccttgc atttcaaact cactcgcatt ttcagagccc attttcgcct tcgttaatct 2641 ctgatgaacc cgggtactaa ccgttttttg attatttgtg gcctttacat ttttgaataa 2701 aattatgatt taacaaagac tgaagtgaat cgagaaattc tttctcaata tctttggtta 2761 ttccattgca atgtcacaac //