Dbfetch
LOCUS NM_001272824 3428 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster bves, transcript variant D (bves), mRNA. ACCESSION NM_001272824 VERSION NM_001272824.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3428) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3428) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3428) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3428) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3428) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3428) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3428) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3428) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3428) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3428) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3428) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3428) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3428) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3428) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3428) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3428) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3428) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3428) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3428) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3428) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3428) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3428) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3428) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3428 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3428 /gene="bves" /locus_tag="Dmel_CG32513" /gene_synonym="BcDNA:SD21670; CG1544; CG15448; CG1754; CG32513; Dmel\CG32513" /map="19E7-19E8" /db_xref="FLYBASE:FBgn0031150" /db_xref="GeneID:33083" CDS 715..1881 /gene="bves" /locus_tag="Dmel_CG32513" /gene_synonym="BcDNA:SD21670; CG1544; CG15448; CG1754; CG32513; Dmel\CG32513" /note="CG32513 gene product from transcript CG32513-RD; CG32513-PD; bves-PD" /codon_start=1 /product="bves, isoform D" /protein_id="NP_001259753.1" /db_xref="FLYBASE:FBpp0305069" /db_xref="GeneID:33083" /db_xref="FLYBASE:FBgn0031150" /translation="MPSTAGSAAGVGMGALINSAGSSASSVMGIGMGRAAATGAGAPG SSGSGADASAAGTLIAQSTAGTSAASSGTITWDNNGTLRSINPGDWSIEQCLGPHHLY FQLGWAFLFLAFLAPHGPYGALWMRAMLLIGCLMMGMHGYLVAFAPDVILWSGMGLFV NFIYLVVVLCRLRPVRFEQEIEAVYLALFQPLHVTRHQFKKVLNCMKVIRALKYQEVY AQEKVTKVDSLSLVLSGKLVVSQHQRALHIVFPHQFLDSPEWFGVSTDDYFQVSIMAM EESRVLIWHRDKLKLSIMAEPFLQTVFDHILGRDVVKKLMQVTQVSESIASNGFLPSG GYAEDAEDKPMLILKKSVDVGHGLTALINRQLQAGDPNSWRLGRIDETDHETAV" ORIGIN 1 tcattgcctt ttaaaaaaat ctcgaacaaa atatgacaag aaaacatcgg atgaatcgcc 61 gggcaggaaa atcacggttt ccactgaaaa actactgata gttatcacat atccgaaata 121 tatgtatttt caatcgaaac gagaaccaaa tccccgaaaa aacgcgaatc ggagtaaata 181 caagttgact tctgctgcag ctgcctaagc gatgcaaaat gtgacaggcg gcagcagcag 241 tagcctcatc aaaggttagc tcaccaatag ccccagctaa atattaaaca aatacggaaa 301 taagagtcta aggccattaa ctaaacggct gactaagctg taaaatgcaa agtaattcaa 361 atttcaacta gctaggatat gaaccgcaag caaaaaatac attcaagaca ccaaccgcaa 421 agcacaaaca ttttgaaaag ggcagcagca ataacaaaac aaaccaccac caacaaaggt 481 tgaggaaaac cgcgcgtaag caacaacaaa cgaattaggc gaaggagaga aaggtggaag 541 atagaaacaa aaggcagatt tttggcattc gcctagcgtg gacaacaacc aaccagtaca 601 tcaaccaatc aatttggtaa ttaggcaaaa tacgtgctgc aaaaaatagc tcaacgatca 661 ggctgagagg agagtgacag actgaaacga aggcagttcg cctggatcaa cggaatgccc 721 agcacggcgg gcagtgcagc tggcgttggt atgggcgccc tgatcaacag tgccggcagc 781 agcgccagta gtgtcatggg cattggcatg ggcagagcag ctgctacggg agcaggagca 841 ccaggcagtt cgggatctgg agcagatgcc tccgccgccg gcactttaat cgcccagagc 901 acggcgggaa cgagcgccgc cagcagtgga acgatcacct gggacaacaa tggaaccctg 961 cgatcgatca atcccggcga ttggtccatc gaacagtgcc tcgggccaca tcacctgtac 1021 tttcagctcg gctgggcctt tctcttccta gcctttttgg ctccacacgg tccctacggc 1081 gccctgtgga tgcgtgccat gctgctcatt ggctgcctga tgatgggcat gcatggctac 1141 ttggtggcct ttgcaccgga cgtcatcctg tggtcgggca tgggactttt tgtcaacttc 1201 atctatctcg tcgtggtgct atgccggctg aggcctgtgc gattcgagca ggaaatcgaa 1261 gcggtctacc tggcactttt ccagccgctg cacgtgacgc gccaccagtt caagaaggtg 1321 ctcaactgca tgaaggtgat acgtgccctg aagtaccagg aggtctacgc ccaggagaag 1381 gtcaccaagg tcgacagcct gtcgctggtg ctgagcggca aactggtggt gtcgcagcat 1441 cagcgcgccc tgcacattgt gtttccccat cagttcctag actcgccaga atggtttggc 1501 gtctcgaccg atgactactt tcaggtctcc atcatggcca tggaggagtc gcgggtgctg 1561 atctggcatc gcgacaagct caaattgtca attatggccg agcccttctt gcagaccgtc 1621 ttcgatcaca ttctgggccg ggatgtggtc aagaagctga tgcaggtcac ccaggtgagc 1681 gagtcgatag ccagcaatgg cttcctgccc tctggtggat atgctgagga tgcggaggac 1741 aagcccatgt tgatactaaa gaagagtgtg gatgtgggac acggactgac ggccctgatc 1801 aaccggcagc tacaggctgg agatccgaat tcttggcgcc ttggaaggat cgatgaaacg 1861 gatcacgaaa cggccgtttg aaagggatcc agatgaaatg tttagacttg tgtttttgag 1921 tattattaga tgtatatttt aggcaatact gaggaacgaa agctgaggaa atccgacaga 1981 aaggaactgc ggaacctgag tgccatgagt cggtatacaa aattatttat acatacatat 2041 ttatactata tgaaagtaat aacaatttgg ctatgggtat tcttctatta tagactcggg 2101 cattacttaa gattttgctg tccttaaatt cggtttgtga caatgaaata agaataagaa 2161 cgtcacacga taatattaaa gccaaaattg ttcttaagta tattattcgg catacggaaa 2221 ttgtattaat tttatatttt taaatgagta gccaaatgaa aaaatcgttt ctgaattgga 2281 tttattaggg tcactcgaga agaatacgcc taagaaagag aatggaaata tacatacata 2341 tgtacatata tgtatatgta tatgtataca gaaaattata cattaattaa aactagaata 2401 gttgcaaatt gtattacgct aaaactacgg attagacgaa tgacaaacca aaacgagaat 2461 aagaaggcaa aacaactgaa tgagatgttt aattattaaa tggagaaaga tgtatttttt 2521 tattacccta catttaagag attatagccg aatgaaatcg gagaaagccc ataagcatta 2581 tgtgtgaaat atgcagaata taaatagacg atatgtacat gactatacat atgtatatgt 2641 atgggaagtt aacgaaaaaa tatgtttgtg gctccccgct agatgcaaag ttagagaaca 2701 ttccatcgtt gattaaacct ttcaatacct atagcaatca ctataacttt acatacagtt 2761 cccgcctaaa ttgtcacctc aatcatcaac ttcctgtgaa agggttcgca accgaaatgc 2821 tggttagtcg aatgaagtgt tcagttagtt tacccataga cctttgatag tccttgttgc 2881 ttttgtatct atgtgcctga attcatgcat gtgcatcaat caaaaaagtt aaatattatc 2941 gaaaagccca aaggttaatt ttgttaaacg atgaacatta gctaggtata acaataacgc 3001 aacccaacca gcataagtac gaaacgccta caaaaaccat agtatatcca aaatattaaa 3061 aaactggacg tatccgagaa ataaaaacga agaaaccaac ttaagaaaac ctaacccccg 3121 ctcatggagg tttcaatctt ctattctcgt cgtatttaag ccatttattt tttataaata 3181 gagcaggaat ttggtttcac acccacagta ttttccccta aattaaagcg cattgtattg 3241 tatcgatccc aacgtttgtc tcatgttagt taatgattag aaacaacaga tccccagatc 3301 gacatagatc gtacacagaa ctacaaccaa accgaaccga actaaaccaa accaaaacaa 3361 atagttcaat gtatttcgta cctttgagca taattaaaaa taaagtaaaa tggaaatggt 3421 ataaaaac //