Dbfetch
LOCUS NM_001272626 3160 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster flotillin 2, transcript variant K (Flo2), mRNA. ACCESSION NM_001272626 VERSION NM_001272626.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3160) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3160) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3160) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3160) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3160) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3160) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3160) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3160) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3160) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3160) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3160) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3160) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3160) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3160) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3160) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3160) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3160) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3160) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3160) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3160) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3160) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3160) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3160) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001272626.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3160 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3160 /gene="Flo2" /locus_tag="Dmel_CG32593" /gene_synonym="CG11547; CG14409; CG32593; Dmel\CG32593; DmFlo2; Flo; Flo-2; flo2; FLO2; FLO[Dm]-2; mdcds_54791; reggie-1" /note="Flotillin 2" /map="12F5-13A1" /db_xref="FLYBASE:FBgn0264078" /db_xref="GeneID:32425" CDS 488..1804 /gene="Flo2" /locus_tag="Dmel_CG32593" /gene_synonym="CG11547; CG14409; CG32593; Dmel\CG32593; DmFlo2; Flo; Flo-2; flo2; FLO2; FLO[Dm]-2; mdcds_54791; reggie-1" /note="CG32593 gene product from transcript CG32593-RK; CG32593-PK; Flo2-PK; reggie-1; flottilin 2; flotillin2; Flotillin-2; flotillin 2; reggie1" /codon_start=1 /product="flotillin 2, isoform K" /protein_id="NP_001259555.1" /db_xref="FLYBASE:FBpp0303249" /db_xref="GeneID:32425" /db_xref="FLYBASE:FBgn0264078" /translation="MGNIHTTGPNEALIVSGGCCGSTKKRTIVGGWAWAWWLVTDVQR LSLNVMTLNPMCENVETSQGVPLTVTGVAQCKIMKSSSYKQTDYHNDEADELLGTASE QFLGKSVKEIKQTILQTLEGHLRAILGTLTVEEVYKDRDQFAALVREVAAPDVGRMGI EILSFTIKDVYDDVQYLASLGKAQTAVVKRDADAGVAEANRDAGIREAECEKSAMDVK YSTDTKIEDNTRMYKLQKANFDQEINTAKAESQLAYELQAAKIRQRIRNEEIQIEVVE RRKQIEIESQEVQRKDRELTGTVKLPAEAEAFRLQTLAQAKQCQTIEGARAEAERIRK IGSAEAHAIELVGKAEAERMRMKAHVYKQYGDAAIMNIVLESLPKIAAEVAAPLAKTD EIVLIGGNDNITNDVTRLVAQLPPSINALTGVDLSKVLSKIPGAKA" ORIGIN 1 agctcattga taagacgcgc cccatctctc gctctccttc taacgtactc gctctctcct 61 tctctctctc cccctcacac acacacacat acacacacgc acacatggct gcttacgtca 121 tgccgcaccc ccttgctcta ctttttattc gcaacttatt tgtgttttat tagaactttg 181 atagagagct gctcacaaaa gtcccccagc agcgccataa aactaataaa aatcaccagc 241 acagtttaca attttcaagt ggccgctcta catttccccc caccccgcca aactcctcaa 301 gtgttcctaa ttccaggcac cacattccga ttcgatcgtt cagatacact atagaatata 361 cgtatatata tacgtattgt atatagcaga acttttcagc ggagctttcg gcaaaaggag 421 taaacagcaa acaaataaaa cataaataga gaccaacaag tagacggcga cgaggaacga 481 ctcaacgatg ggcaacatac acacgacggg tcccaatgag gcgttaattg tttcaggtgg 541 ctgctgtgga tcgaccaaga agcgcacgat tgtgggcggc tgggcgtggg cgtggtggct 601 ggtaaccgat gtccagcgac tgtccctcaa tgtgatgacc ctgaatccga tgtgcgagaa 661 tgtggaaacg tcgcaaggtg ttccgctaac ggtgaccgga gtggctcaat gcaagatcat 721 gaagtcatct tcgtataagc aaaccgatta tcataacgac gaggccgacg agcttctagg 781 cactgccagc gagcaattcc ttggaaagag cgtcaaggag atcaagcaga cgatcctgca 841 aaccctcgaa ggacatttga gagccatatt gggaacgctt acagtagaag aggtgtacaa 901 ggaccgcgac caattcgctg ccttggtgcg cgaggtggcc gcaccggacg tgggtcgtat 961 gggcatcgag attctctcgt ttacgatcaa ggacgtctac gatgatgtgc agtacctggc 1021 ctcgttgggc aaggcccaga ccgccgtggt caagcgggat gcagatgccg gcgtggcgga 1081 ggccaatcga gatgccggta tccgtgaggc ggagtgcgaa aagagcgcca tggatgtgaa 1141 atactcgacg gacacgaaaa tcgaggacaa caccaggatg tacaagctgc agaaggccaa 1201 tttcgatcag gagatcaaca cggccaaggc cgaatcgcag ttggcctacg agctgcaggc 1261 agccaagatc cgccagcgca tccgtaacga ggagattcag atcgaggtgg tggagcgacg 1321 caagcagatc gagattgagt cgcaggaagt gcagcgcaag gatcgcgagc tcactggcac 1381 agtcaagctg cccgccgagg ccgaggcctt ccgcctccag acccttgcgc aggccaagca 1441 atgtcagacc atcgagggtg cccgtgccga ggcggagcgc atacgcaaga tcggatcggc 1501 ggaggcccat gccatcgagt tggtgggcaa ggcggaggcg gaacgcatgc ggatgaaggc 1561 ccatgtgtac aagcagtacg gcgatgcagc aattatgaat attgtactcg aatcgctgcc 1621 caagattgcc gctgaggtgg ctgcaccact ggccaaaacc gatgagattg tcctaattgg 1681 cggcaacgat aatataacca acgatgtgac tcgcttggtg gcccagctac cgccatcgat 1741 caacgccttg accggagtgg atttgtccaa ggttctgtcc aagataccgg gggccaaggc 1801 gtgaaaccta atggaatggg atatccagga aatggcaatg acaacgtaac gcagcgtaaa 1861 ggaattgtaa ccgatacaaa aaccagataa ggatagacaa ccgaattaag aaagagacga 1921 caggaagcga caaaataaga tggcgatagt ttgctaaaga gggggcgtgc atttgttaga 1981 gagagaaaga ggggaaacag cgaaacgaac ttgaaaaact caagtttcga aatgaaatcg 2041 aacgtgtagc taaatgtact ccgatattat aatatattta tatataatat atatatatat 2101 atatctatat atatatatct atatatatat atttgtatat ttatatgcac acatgcaata 2161 cacacataca cttgtctcgt ctgtgtggtg tcctagtgtg tgtgtgtgat gtttggcggc 2221 gtaacaatca aaaacagaac acaaaaaaca accaacgtta atctcagcta aagttatgca 2281 tttcgaacgc aacattttgt ggccttttct ctcgaaaacg aaaaaccgat aactataaca 2341 agaaatcaac gtgaaatttg tataacttta aaacgaaaac catttaagca gagtgttagc 2401 tatttattta ctatgctata tatactatat acatgcagac ttgctataca caaagagctc 2461 tttcaataaa cacatagaat tatataacag acagtgttgt acagcatata tgtattattt 2521 tacagtgctg tagagatctg tataagtagt ctctctccat ctccttctta tacaatttct 2581 atctgcaact aaaaacaaaa aaaaaaaaac aaacaaaaag cttacatact tccaggcaaa 2641 ttaaattata cattattatt tttttaatac ataactaact atttatttgt tgattcgtgc 2701 ctgtttcttt cgttgaattt tgttaaacga ttacttttta cggaattgtg ccatataagg 2761 tgcaaacatt ttatatttgt ttatttttga ttattatacc aaataatgct ttgctcgatc 2821 aattttatat cgcatattgc aaaatagtcg tatattactt tacaacactg ttttttcgac 2881 aattggcgct gctttacacc ccacacacac attaaccaac acaaatgagt ttgaatttat 2941 gtattattct cagtgcgcaa gaaaaaatta agcctaattt cttgttatac aaagcgttta 3001 tataatcatg tttgcctcgt ttaatcattt ttttatgttt attatttatg taacaacaca 3061 tattgaacta cgaatatgca tttaaaattt ttgtacttta ttcttataca ttttttttta 3121 gtttatagca aaaggaaaga aaaaataaag aaaataattg //