Dbfetch
LOCUS NM_001272471 3548 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster hyperkinetic, transcript variant L (Hk), mRNA. ACCESSION NM_001272471 VERSION NM_001272471.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3548) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3548) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3548) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3548) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3548) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3548) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3548) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3548) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3548) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3548) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3548) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3548) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3548) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3548) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3548) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3548) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3548) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3548) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3548) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3548) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3548) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3548) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3548) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001272471.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3548 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3548 /gene="Hk" /locus_tag="Dmel_CG43388" /old_locus_tag="Dmel_CG32688" /old_locus_tag="Dmel_CG34319" /gene_synonym="CG17779; CG2287; CG32688; CG34319; CG43388; Dmel\CG43388; Dm_X:51771; hk; HK; lincRNA.975" /note="Hyperkinetic" /map="9B4-9B5" /db_xref="FLYBASE:FBgn0263220" /db_xref="GeneID:31955" CDS 707..2497 /gene="Hk" /locus_tag="Dmel_CG43388" /old_locus_tag="Dmel_CG32688" /old_locus_tag="Dmel_CG34319" /gene_synonym="CG17779; CG2287; CG32688; CG34319; CG43388; Dmel\CG43388; Dm_X:51771; hk; HK; lincRNA.975" /note="CG43388 gene product from transcript CG43388-RL; CG43388-PL; Hk-PL; kvbeta channel subunit; hyperk; hyperkinetic" /codon_start=1 /transl_except=(pos:2348..2350,aa:OTHER) /product="hyperkinetic, isoform L" /protein_id="NP_001259400.1" /db_xref="FLYBASE:FBpp0303755" /db_xref="GeneID:31955" /db_xref="FLYBASE:FBgn0263220" /translation="MSMALCNLNGDGSAAQSTSQSQSQSPAATAAAAPLLPHSHSHTL QPESTPLLLGHEQSGSAAPEGSGGGDVTDGAVTSIEMPTVVADDAGVPPLPLPLPQST PQPLLMALPANLNFITGPTTQQLMIGNGAMGVIPSTNDSNNNNNNNNNVDNTSDESNP VTIYRCRAPIASLDCMEEFSRSISLGSNPALPLRHGSTPTPGLRYKNLGKSGLRISNV GLGTWPVFSPGVSDDQAEAILKLAIESGINLFDISEAHSETEIGKILQRAGWKRTAYV ITTKVYWSTKSEERGLSRKHIIECVRASLQRLQLQYIDIVIIHKADPMCPMEVVRAMS YVIQQGWAMYWGTARWSQVEIMEAYTNCRQFNCITPIVEQSEYHMFCREKCELYLPEM YNKIGVGLMAWGPLSMALSDTQNGDKLFLPKGSFKTKSFSWTEDEINRNAALSPQGSW GKDRIDEGRRHCDRLRDLAALAEKLGCSPTQLSIAWSLKHEPVQCLLLGATSAEQLHQ SLQSLQLLPRLSSSVMLELERILENKPVRPPMISTLALRXQSACPQGPLSLSGGGPCG ADSPKHEDEAFIEEVDAAKDAAKQGFCLIQ" ORIGIN 1 ttattcgact ggactttgcc ttaaaagtat gctttttaga aaacaaaatc ccatgtgatt 61 tgtagtccag tctaagtgta agatacaaca aaaatcaacc aaaacaaatg cagaagtgaa 121 attgaaatat ctgaacttga aactttgaaa ttatgataaa ctttcaaagt aatcatatca 181 ttcaaaatag taaatatgcg aaagcaaaaa aaaacttaaa taaccttaaa gatgaacata 241 taattttaga aaacctacaa aaaaaataaa aaaatttgaa acctaatagg tgttgaaaat 301 actacgtaaa agaaaaccaa actataaact cttaacttca aaaataaata ttaatattta 361 acaagtagct gaatcaatag cagacatttt aaatgtcaaa gcaaacttca attagaattg 421 caataaaaaa accacacaaa tataaataaa accttgctgc tattaaaatt gaaatcaaat 481 gcctaaataa ataatagaag aaattccaat caacacgcag tagctaaata aatatgaagt 541 gcgtgcaaac ctaggataaa caatggcgtc caatagtatc taaaaaaata tatatatata 601 tatatagaaa acgtaggaag caaaataaca acacaagtga aagtaaactt tgataaatat 661 taaaattgag ttaaatcata acaaaagcag tggaactaca agcacaatgt ctatggcatt 721 atgcaattta aatggtgacg gctctgcggc gcagtcgacg tctcagtcgc agtcgcagtc 781 gccggccgca accgctgcag cagctccgtt gctgcctcac tcgcactcgc acacgctaca 841 gccggagagt acgccgctgc ttttgggaca cgagcagagc ggcagcgctg cgccagaggg 901 cagcggcggc ggtgacgtca cagacggagc ggtaacatcc attgaaatgc ccactgttgt 961 tgccgacgat gccggtgtac cgccgctgcc gctgcctctg ccgcagtcga cgccgcagcc 1021 gctgcttatg gcactgcccg ccaatttaaa cttcattacg ggacccacga ctcagcaact 1081 gatgatcggt aatggcgcca tgggcgtaat tccctcgacc aatgatagca acaataacaa 1141 taacaacaac aacaatgtgg acaatactag cgacgaatcg aacccggtca ccatttacag 1201 gtgccgggct cccattgcgt cactcgactg tatggaggag ttcagtcgtt cgatcagttt 1261 gggctccaat ccggcgctac cattgcgcca tggatccaca ccaacgccgg gactgcggta 1321 caagaatctg ggcaaaagcg ggttgcgtat ctcgaatgtg ggattgggta cctggccggt 1381 attttcgccg ggcgtgagcg atgaccaggc ggaggcaatc cttaagctgg ccatcgagag 1441 cggtatcaat ctgttcgaca tctcggaggc gcactcggag acggagatcg gcaagatact 1501 gcagcgggcg ggctggaaga ggaccgccta tgtcatcacc acgaaggtct actggagcac 1561 caagtcggag gaacgtggtc tctcccggaa acacatcatc gaatgtgttc gtgccagttt 1621 gcagcgattg cagctgcagt acatcgatat cgtcatcatc cacaaggcgg atcccatgtg 1681 tcccatggag gtggtgcgcg ccatgagcta cgtgatacag cagggctggg caatgtattg 1741 gggcaccgct cgatggagcc aggtggagat catggaggcc tataccaact gccgccagtt 1801 caactgcatc acgcccattg tggagcagtc cgagtaccat atgttctgtc gcgaaaagtg 1861 cgaactctac ctgccggaga tgtacaacaa gatcggagtg ggcctcatgg cctggggtcc 1921 actctcgatg gccctcagcg acacccagaa tggggacaag cttttcctgc ccaagggctc 1981 cttcaagacg aagagcttct cgtggaccga ggacgagatc aatcgtaatg ccgctctgtc 2041 gccgcagggc agttggggta aggaccggat cgatgagggg cgccgccact gcgaccgtct 2101 ccgcgacctt gccgccctcg ccgagaagct gggctgcagc cccacccagc tgtccatcgc 2161 ctggtcgctg aaacatgagc cagtgcaatg cctgctgctg ggcgccacat cggcggagca 2221 gctgcaccaa agtctgcagt cgttgcagct gctgccacga ctctcatcga gcgttatgct 2281 ggagctggaa aggatattgg aaaacaagcc ggtgcggccg ccgatgatct cgaccttggc 2341 gctccggtga caatcagcgt gcccgcaggg gccgctcagc ctgagcggtg gcggaccctg 2401 cggcgccgat tcgcccaagc acgaggatga ggccttcatc gaggaggtgg acgctgccaa 2461 ggacgctgcc aagcaaggct tctgcctcat ccagtgacaa aaggagtcct tagataacga 2521 taataaattt ttgaaagtga ttagcagtaa aactagccta agtagcaata ccatgacgac 2581 aacaataagc aagcaggagc agcaacagca gcagcagcag caacaacagc agcaacatct 2641 ccagcctcag cagtatgtgc aactacagca gcaacatttg atggccagcg gcagcaccag 2701 cgattcggcg gcagctgttc ccattgcagc tgaactccag ttcgactccc tgaataacaa 2761 taacaacaac aacaataata ataccaatgg cagtccggaa caggcactgc ccaccagcga 2821 tgaacgccaa aaacgtcgct ccctgctcaa ctttaagtcc ctggactttc atctaaagtc 2881 cctgtacagt ggcctacgga gtaactcagg aacaactcca cccagtcaac cgaatagctc 2941 tgttccggcg gtggatcagc cgcagcgtag aatgccctat ttgcgggtgg agagtgttga 3001 tcccgaggag ccaagaggat cagttctgcc cggacattcg cccagctttc tgtcacccta 3061 cagtggcgtt ggcggtggag ccggaagcct gcagttgccc tcaaacgatg gaggcaccat 3121 caggagatcc tcaacatccg acattgttaa ttgcagacgg ggagggggag cagggggatc 3181 gggcggagga gcagcctctg cccaggacag caggaggccg agcacatcgg atttgctcag 3241 aaaggcaagg gaacgaaagg gcagtgaggc caggatgggc agaagtgtct cccacagtgg 3301 gctaaccagg ggcggacccg gcggaggagg tggtggcctg ggcgggagac gaaccagcat 3361 ggccttctaa aaacagaaat aatagtgaaa aaaaaaaaaa ctatggaaaa aaaaacttaa 3421 gcaatgaggt atggcgaaaa aaaaaactgt tgatcaaatc tgaatcagaa ataggctgac 3481 aaaatggcgc ttatgaattt ttatctagtg aaaagaaaat taaaaaaaaa agaaaacaag 3541 aaaaaaat //