Dbfetch
LOCUS NM_001272396 2980 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant B (CG2278), mRNA. ACCESSION NM_001272396 VERSION NM_001272396.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2980) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2980) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2980) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2980) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2980) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2980) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2980) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2980) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2980) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2980) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2980) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2980) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2980) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2980) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2980) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2980) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2980) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2980) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2980) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2980) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2980) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2980) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2980) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2980 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2980 /gene="CG2278" /locus_tag="Dmel_CG2278" /gene_synonym="Dmel\CG2278" /map="7D17-7D17" /db_xref="FLYBASE:FBgn0030017" /db_xref="GeneID:31751" CDS 165..2132 /gene="CG2278" /locus_tag="Dmel_CG2278" /gene_synonym="Dmel\CG2278" /note="CG2278 gene product from transcript CG2278-RB; CG2278-PB" /codon_start=1 /transl_except=(pos:1965..1967,aa:OTHER) /product="uncharacterized protein, isoform B" /protein_id="NP_001259325.1" /db_xref="FLYBASE:FBpp0303732" /db_xref="GeneID:31751" /db_xref="FLYBASE:FBgn0030017" /translation="MDNWRPGATNMPIMSPSPYLLSRFTSNVPLPTLYAGDSARKPKL SVIELLLYNMASLLAGVAAGYDVRMSNVSPVHPTLLSEVPALKAAPKAAITGTEEVVE DSLPEQILELEVNVPLKQQELRESTPRKIVTQARFGGIEAPVSKSQPTSLARRIGGSQ PYYTPVQRTPQHQLHHHHQQQQQQQQHHHHHPHQPQPVPSAVVTTVAPSQPPAVVSAL YAGTQPPTPSPRRKLSNSSFGNANPQADVFEEFRVGGGIGPPPLYAPADYLRNGPSYS NDGGNYRNGYFGSNYFPYRPELNYSYERDCKSYPDYSYDYNHRLPDYYDYQYEAPPVV PLPVTVPCPVSQTRTPPPRVPQMGVSAAGHRRTPSTVSNNSNVLLEHEELLCYDYNNL NLNAEYERECERERELDQVPPPTKQELYAGSPKLLNRLIHSPLPMTKSKYATAAVTRP ASLPFEQHALSLGYQQSGAGSVVAALPPPLAGQSKLRSSLKKYNSGNGGNGSTSSQQG TPTNPTPPDSLTSDDSSYLSAKEGSIGSQHSRVRFSPEAYLDANPLPALGRRMTAPAM QLPHQQQQQQQQQQQRRQRQASSGSTPSPSASSSXQSRLALTLQLARSPGADIGTGGG AADLALHQQRVPYRWYSGARRSRSAHYEYRL" ORIGIN 1 gtaccccccg cctccgacta tccgattacc acccgactac cgaccatatc ccagccatcg 61 ttcccccaag ccagtaccaa ccatatgccg taactcaatc atgtctcata tccgccttgg 121 aatgctgccg atcggaccga ccaggctacc agggcaatag caagatggat aactggcgtc 181 cgggtgccac caacatgccg attatgtcgc catcgccata tctcctcagc cgcttcacca 241 gcaacgtgcc actgccgaca ctctatgccg gcgattcggc gcgcaagccg aagctttccg 301 tgatcgaact gttgctgtac aacatggcat ccctgctggc cggagtggcg gccggatatg 361 atgttcgcat gtcgaacgtg tcgccagtgc atccgacttt gctcagcgaa gtgccagctc 421 tgaaggcggc accaaaggca gcgattaccg gaacggaaga ggtggtggag gattcactgc 481 cggaacagat cctggaactg gaagtaaatg tgccactgaa gcagcaggag ctcagggaaa 541 gcacgccacg taagatagtc acacaagcaa gatttggtgg cattgaagct ccggtcagca 601 aatcgcagcc cacatctctg gcccggcgca tcggaggcag tcagccgtac tacacacctg 661 tgcagcggac accacagcat cagttgcacc atcaccacca gcagcaacag caacagcagc 721 agcaccatca tcatcatcct caccagccac agccagttcc atcggccgtg gtgacaacag 781 tagcgccatc acagccgcca gccgtggtga gtgcactgta tgccggaacc cagccaccga 841 cgccatcgcc acggcgtaag ctgagcaaca gcagctttgg caatgccaat cctcaagcgg 901 atgtcttcga ggagtttcgt gtgggcggtg gcattggtcc accgccactt tatgcgccag 961 ccgattacct gagaaacgga cccagttact ccaacgatgg gggaaactac cgaaatggtt 1021 acttcggttc caattacttt ccataccggc cggagttgaa ctacagctac gagcgtgact 1081 gtaaatcgta tccggactat tcctacgact ataaccatcg cctgccggac tactatgact 1141 accagtatga ggcgccacca gtggtgccgc tgcccgtgac cgttccctgt ccggtgagcc 1201 agacccgtac accaccaccg cgggtgccac agatgggcgt aagtgcggcc ggacaccgac 1261 gcactccctc aaccgtttcg aacaattcga atgtactgct ggagcacgaa gagctgctgt 1321 gctatgacta caacaatctc aatctgaatg cggagtacga gagggaatgc gagcgggaac 1381 gagagcttga ccaggtgccg ccgccgacaa agcaggaact gtatgcagga tcacccaagc 1441 tactgaaccg cctcatccac agtccgttgc cgatgaccaa gagcaaatat gccacggcgg 1501 cggtgacgcg accagccagt ctgcccttcg agcagcatgc gctctcgctg ggctatcaac 1561 aatccggagc gggttcggtg gttgctgcac taccaccacc actggccggc cagtcaaagc 1621 tgcgcagctc gctaaagaag tacaatagtg ggaatggtgg caatgggtca acatcctcgc 1681 agcagggcac acccactaat cccacgccgc cggactcgtt gaccagcgat gacagctcct 1741 acttgagtgc caaagagggt tccattggct cccagcacag tcgggtgcgt ttcagtccgg 1801 aggcctatct ggatgccaat ccgctgcccg ccttgggacg tcggatgacg gcaccggcga 1861 tgcagctgcc acaccaacag cagcagcagc aacaacaaca acagcagaga cgccagcgac 1921 aggcgtccag tggcagcact ccgtcgccat cggcctcatc ctcctagcag tcgcgtctgg 1981 cgctaacctt gcagttggcg cggagtccgg gcgcggacat tgggaccggc ggaggagccg 2041 ctgacttggc gctgcatcag cagcgagtac catatcgctg gtactcggga gctcggcgat 2101 ctcgatcggc gcactatgag taccgcttgt gaaagagcag gacaggcaca tccaggcaag 2161 cgaaaaagag agggttagcc atagcagctg gaagatctgg gaggcgataa ctcaagttca 2221 cagaaagcaa ttggaagaga aatgcaatat caaagcgcag ataaatcaaa tggttttcag 2281 gaagaactag atacatacat atatatatat ctatatcaaa cggatgacag tagttgagat 2341 ggggaatact acgaaatatc cttgtggcta agattccaga tactataggt tcttgcagaa 2401 tttgataccc actgtctgta cataaaagta gctacccaag ttgtttacac ccaagtacat 2461 atatcaactt cgatgttaat gttagccaac ctataggcag ggaaggaaat cttcaggaga 2521 ttcacacaaa gatactcccg atcgaaaaat gtgcccgagg attcagacat acacacccat 2581 agacccatag acttgtgcag cccccgactt gtgcgatttg ccttaaaagt agagtgaaga 2641 cttcactagt tttgcctaat gacggattcc aaaaccaaat atatgtatat cacacatcca 2701 aacgaatccc aaatccctcg tataagatta gccgccccat caacggatgg cacggatatg 2761 gctgatatat actcccattt atgtattata cacctaggta tacctatgta tagtgacgaa 2821 ggcctccact tgcgttctcc gatttttgat tcagattaag tgcagccagc tagctagcaa 2881 gccatcatca acaacaataa tagataacaa acaattaatt ccgaggacac cgcatcccga 2941 tcaagacaca cgccagccgt aagctccatt tttaagtctg //