Dbfetch
LOCUS NM_001272149 3376 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster eIF4E-Transporter (4E-T), transcript variant H, mRNA. ACCESSION NM_001272149 VERSION NM_001272149.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3376) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3376) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3376) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3376) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3376) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3376) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3376) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3376) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3376) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3376) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3376) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3376) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3376) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3376) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3376) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3376) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3376) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3376) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3376) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3376) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3376) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3376) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3376) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004353). On Jul 15, 2014 this sequence version replaced NM_001272149.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3376 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="4" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3376 /gene="4E-T" /locus_tag="Dmel_CG32016" /gene_synonym="CG11097; CG11232; CG32016; Dm4E-T; Dmel\CG32016" /note="eIF4E-Transporter" /map="102F3-102F3" /db_xref="FLYBASE:FBgn0052016" /db_xref="GeneID:43836" CDS 140..3079 /gene="4E-T" /locus_tag="Dmel_CG32016" /gene_synonym="CG11097; CG11232; CG32016; Dm4E-T; Dmel\CG32016" /note="CG32016 gene product from transcript CG32016-RH; CG32016-PH; 4E-T-PH" /codon_start=1 /product="eIF4E-Transporter, isoform H" /protein_id="NP_001259078.1" /db_xref="FLYBASE:FBpp0306688" /db_xref="GeneID:43836" /db_xref="FLYBASE:FBgn0052016" /translation="MDTSKISARYSKVDLLALRYEGKSRQRPQCSTRLELQTLGFWKI NLNTAALTVSSAYSNQNKNRLSPEADNSSLICSNSSSISSRRAMRNRERANNYYQRFV PTDSLLISGEDKDKDALSHGQPYKLNIIDHRSISSSHLMPAFAKRRFVISKGSNSEES NEGINTCASKGKAASSPSRKGSELDTAETCLNFVQPDHDQCMSSSPTFSTSRQERRIG SGRLLPRSDNWDYKNEKTVEASIENEKETSPNGSGSTSSLNQHNQSQHRSRTFSGRLV ERVPEVTDRRFQYDSKKSFDRQGINNRRISGKEPFSTQSRSKRGNSYLIHEEPEWFSA GPKSQLETIDLHGFEDLEKNEERSVTEDKNNQIQQLDKNLDAQASKDEASMRNSNDSL NFREVIPSDEKKHTDENVVTSIQNSTDLGHPNKNKPIQMQPSQNPESEFNFDAFLNMH PLDNSVLSNDETGKSDSKGTSRFSRWFRQKEAANNNEFPGFRESHAQEKRGIPSVKDL EAQMIKVDMRTDLINPIAGSLCQTVQMEKPIARDTEAFKKLLQQLGSQARQHHPCNDD CRTINLSNIANHVHLESKLHQKINDGHLQQPELSVNVPTMPTSSHVFLQKRLEIQHLI QRLHCGDVSHDFLEKELDNPSTPAATKDVIATVLNEYSHSKRNPVVTGDPNIFTQQSF LQPQSVHQHYSQVLRKMTADKDTQSPSTYCQNPQYHVHQQNAKQVGTRENVLEPQLTA TMAVQPRMILGGGNFAIGQNNQHLSPNMSQSRNQQVLKWTSGNMQMVHGKTFGRPILK GGLNSMPHSNSALPFTAHKIEMQPIHQPHLQQQQHRFKAVQSVESNLNTESVHQNITS PVGWHQLYMQHQQQHHHTRQQLSQRVIYGEMHRQSNPQMSPPVPGFSDSSDSGNVIKA NSLTSPSYQRDERISSPTNQLAQWFSPELLAKASAGKLPLLNVNQALSLEEFERSIQH SSGVVHN" ORIGIN 1 tgtgtactat ttgtatattc attgtacaat ttctcccgtt catataggag agtgttctgt 61 ttttaataat tttggatatc ttaacttttt cgactttctg taataagtta gattacacag 121 tgaactatag tccttagcaa tggatacatc aaagattagt gccaggtact cgaaagtaga 181 cctgttagct ctaagatatg aaggtaaaag tcgacagcgc ccgcaatgtt caacacgact 241 tgaattgcag acgctaggtt tttggaaaat taatctgaac acagctgcgt taaccgtgtc 301 cagcgcctat tctaatcaaa acaagaatcg actttctcca gaagcagata actcgagctt 361 aatttgttcc aatagtagct caataagttc acgtcgcgct atgagaaatc gagaacgggc 421 aaacaactat taccagcgct tcgtacctac cgattctctt ctaataagtg gggaggataa 481 agataaggat gcgctttctc atggacagcc ctataagttg aatatcatcg atcaccgtag 541 catatcatct tcacatttaa tgccggcatt tgcaaagagg cgttttgtca tatcgaaagg 601 cagcaacagc gaggaaagca acgaggggat aaacacttgt gcaagcaagg gcaaggcagc 661 cagttcgcct agccgtaagg gtagcgagtt ggatactgct gagacatgtt tgaattttgt 721 tcagccggat cacgaccaat gcatgtcatc ttcacctaca ttttcaacat cccgccaaga 781 aaggcggatt ggtagcggtc ggctgttgcc aagaagtgat aattgggatt acaaaaacga 841 aaagaccgta gaagccagca ttgagaatga aaaggaaaca tctccaaatg gatctggaag 901 tacaagcagt cttaatcagc acaatcaaag ccaacatcgt tctcgaacat tcagtggaag 961 gttagttgaa cgtgttcccg aagtcacaga tcgtcgtttt caatatgact ccaaaaagtc 1021 ttttgatcgt cagggaatta ataatcgacg catttctggt aaggagcctt tcagtactca 1081 aagccgaagc aagcgtggca attcctatct cattcacgaa gaacctgaat ggttcagtgc 1141 aggacctaaa tcacagctag aaactattga tctacacggg tttgaagacc tggaaaaaaa 1201 cgaagagcga tccgtaactg aagataaaaa taatcaaatt caacaacttg ataaaaattt 1261 agacgcgcaa gcaagcaaag atgaagcttc gatgagaaac agcaatgata gtttaaattt 1321 ccgcgaagtc attccaagtg atgaaaagaa gcacactgac gaaaatgtag tgacttctat 1381 tcaaaactca acagatctcg gccatcccaa taaaaacaaa ccaattcaga tgcagcccag 1441 tcagaatcct gaaagtgaat ttaattttga tgcctttctt aatatgcatc ccttggataa 1501 ttccgttttg agtaatgatg aaactggaaa aagtgactca aaaggaacat cccgttttag 1561 ccgatggttt cgacaaaaag aagctgcaaa taataatgag tttccagggt ttcgggaatc 1621 gcatgctcaa gaaaaacgtg gtattccaag tgttaaggat ctggaagctc aaatgataaa 1681 agtggatatg aggactgatt taataaatcc aatagcaggg tcattatgtc agacagtgca 1741 aatggaaaaa cctattgcta gagacactga ggcattcaaa aaacttttgc aacagttggg 1801 ttctcaagcc aggcagcatc atccatgcaa cgacgattgt cgtacaataa acctctcaaa 1861 tatagcaaat catgtacacc ttgagtcaaa attacatcaa aaaataaatg atggtcattt 1921 gcagcaacca gagttaagtg ttaacgtgcc aaccatgcca actagtagtc atgtattttt 1981 gcaaaagcgt ttggaaatcc aacatttaat tcaaagactt cattgtggag acgtttcaca 2041 tgattttttg gaaaaagaat tggataatcc cagcacccca gcagccacaa aggatgtcat 2101 tgccacagtg ttgaatgaat attctcattc taaaagaaat ccggtggtca caggcgatcc 2161 caatattttt acccaacaat cgtttcttca gcctcaatca gtccatcagc actactctca 2221 agttttaaga aaaatgacag ccgataagga tacgcaatca ccaagcactt attgtcagaa 2281 cccacaatat catgtacacc aacaaaatgc caagcaagtc ggtactcgtg agaacgtact 2341 tgagccacag ctgaccgcaa caatggctgt acagccccga atgatattag gcggtggaaa 2401 ctttgccatt ggccaaaaca atcaacattt gtctcccaac atgtcacaaa gtcgtaatca 2461 acaagtgtta aagtggactt ctggcaatat gcaaatggtc cacggaaaaa catttggccg 2521 acctattctg aaaggaggtc ttaattcaat gccgcattcc aattctgcac ttccttttac 2581 tgcccataaa attgaaatgc aacccattca tcaaccacat ctacagcagc agcaacatag 2641 atttaaagca gttcaatctg tggaatcaaa tctgaatacc gaaagtgttc accaaaacat 2701 tacatctcct gttggatggc accaacttta catgcaacat cagcaacaac atcatcacac 2761 acgacagcag cttagtcaaa gagtgattta tggagaaatg caccgtcaat caaatccaca 2821 aatgtctccg ccagtcccag gtttttctga cagctccgat tccggtaatg tgatcaaagc 2881 aaacagcctc acatctccta gctaccagag agatgagagg atttcatcac caaccaatca 2941 attggcgcaa tggttttccc ctgagcttct tgcaaaagcc tctgctggaa aactgccact 3001 tttaaatgtg aaccaagcac tcagtttgga agaatttgaa cgaagcattc aacattcctc 3061 aggcgtcgtg cataactaac tcttgaagat agttttaagt tcaatacagc aaattttaaa 3121 atgacaccga aatcaaatat ttttttgtct aaatttaatt tcttctttat gttaaggagt 3181 atgtctgtat gggcacaaat ctattaaata attctggaaa caaaattttt agcatataaa 3241 agtagttttc tataaataaa tatacattaa cttaaactat ttaatgtatt tacagaatgt 3301 aattattata ttgtacaaaa ctattttact gtaaataaca cgcaattata taagtttaaa 3361 aatgtttact tttctt //