Dbfetch
LOCUS NM_001269878 3483 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans BK channel (slo-1), partial mRNA. ACCESSION NM_001269878 VERSION NM_001269878.3 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 3483) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 3483) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3483) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 3483) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On Apr 15, 2020 this sequence version replaced NM_001269878.2. COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3483 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="V" gene <1..>3483 /gene="slo-1" /locus_tag="CELE_Y51A2D.19" /db_xref="GeneID:180203" /db_xref="WormBase:WBGene00004830" CDS 1..3483 /gene="slo-1" /locus_tag="CELE_Y51A2D.19" /standard_name="Y51A2D.19i" /note="Confirmed by transcript evidence" /codon_start=1 /product="BK channel" /protein_id="NP_001256807.1" /db_xref="EnsemblGenomes-Gn:WBGene00004830" /db_xref="EnsemblGenomes-Tr:Y51A2D.19i" /db_xref="GeneID:180203" /db_xref="GOA:H8ESE2" /db_xref="InterPro:IPR003929" /db_xref="InterPro:IPR005821" /db_xref="InterPro:IPR024939" /db_xref="InterPro:IPR027359" /db_xref="InterPro:IPR036291" /db_xref="UniProtKB/TrEMBL:H8ESE2" /db_xref="WormBase:WBGene00004830" /translation="MGEIYSPSQSKGFNQPYGYPMNCNLSRVFMEMTEEDRKCLEERK YWCFLLSSITTFCASMILVVIWRVVTHLCCQRREKEFVEPIPAPEAVQINMNGSKHAP SETDPFLKQQEEKHLGWMTEAKDWAGELISGQSLTGRFLVLLVFILSIGSLIIYFYDA SFQNFQVETCIPWQDSPSQQIDLGFNIFFLVYFFIRFIAASDKVWFLLEMYSWIDFFT IPPSFVAIYLQRNWLGFRFLRALRLMTVPDILQYLNILKTSSSIRLTQLVTIFVAVCL TGAGLVHLLENSGDFFKGFINPHRITYADSVYFVLVTMSTVGYGDIYCTTLCGRLFMI FFILFGLAMFASYVPEIADLIGNRQKYGGEYKGEHGKKHIVVCGHITYDSVSHFLQDF LHEDRDDVDVEVVFLHRVVPDLELEGLFKRHFTKVEFFTGTVMDSLDLSRVKIGDADA CLVLANKYSTNPDAEDAANIMRVISIKNYSSDIRVIVQLMQYHNKAYLLNIPSWDWKR GDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKTSQTTPDWLNLYLCGAGMEM YTDTLSHSFVGMTFPEAVDLLFNRLGLLLLAIELKDEENKECNIAINPGPHIVIQPQT QGFFIAQSADEVKRAFFWCKQCHDDIKDVSLIKKCKCKNLALFRRNTKHSTAAREKNA KISDYSDFDALFYQNDARATDVLQQFQPQAPAGPMGHLGQQVQLRMINQQSSTSDTHL NTKSLRFAYEIKKLMPSSGGRRNSMSIPPDGRGVDFSKDFEQQFQDMKYDSTGMFHWC PSRNLEDCVLERHQAAMTVLNGHVVVCLFADQDSPLIGLRNFIMPLRSSNFHYHELKH VVIVGDLEYLRKEWKTLYNLPKISILNGSPLSRADLRAVNINLCDMCVIISARVPNTE DTTLADKEAILASLNIKAMQFDDTLGFFPMRHQTGDRSPLGSPISMQKKGAKFGTNVP MITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAISVLDSLMSTTYFNDSALT LIRTLVTGGATPELELILAEGAGLRGGYSTPETLSNRDRCRIAQISLQDNPYDGVVHN TTYGAMFTIALRRYGQLCIGLYRLHDQDNPDSMKRYVITNPPAELRIKNTDYVYVLEQ FDPGLEYEPGKRHF" ORIGIN 1 atgggcgaga tttactcgcc ttcgcagtcg aagggcttca atcaaccata tggatacccg 61 atgaattgta accttagtcg agtattcatg gagatgactg aagaagatcg aaagtgcctg 121 gaggagcgca aatattggtg ttttttactg agcagcatca ccacattctg cgcctcaatg 181 atattggtcg taatatggcg agtggtgaca cacctgtgct gtcaacgccg agaaaaagag 241 tttgtggagc ccatacctgc tccggaagcc gtccaaataa atatgaacgg gtcgaagcac 301 gcgccaagtg aaaccgaccc gtttttgaag caacaagagg aaaaacactt gggatggatg 361 acagaagcca aggactgggc tggcgagctg atatccggac aaagtctgac gggacggttt 421 ctggtacttt tggtgttcat tttatcgatt ggatcgttga ttatttattt ttacgacgct 481 agtttccaaa acttccaagt agaaacgtgc atcccgtggc aggacagtcc ctcgcaacaa 541 atcgacctgg gcttcaacat attttttctc gtctattttt tcattagatt catcgccgcg 601 tccgacaaag tttggtttct gcttgaaatg tacagctgga ttgatttttt cacgattccg 661 ccaagcttcg tggcaattta cttgcagagg aattggctcg gattccgttt cctccgtgct 721 cttcgcctca tgaccgtacc cgacattcta cagtacctca acatcctgaa aacatcttca 781 tcaatccgat tgacacagtt ggtcacaatt ttcgtggcgg tttgtctgac tggagccggc 841 ttggtgcact tactggaaaa ttctggggac ttcttcaaag gatttataaa tccgcacaga 901 atcacttatg cggactctgt gtactttgta ctggtcacaa tgtctactgt cggatatgga 961 gatatctatt gtacgacgct ttgcggccga cttttcatga ttttcttcat tctgttcggt 1021 ttggccatgt ttgcaagtta cgtaccagaa attgccgatt tgattggaaa ccggcaaaaa 1081 tacggtgggg agtacaaagg agagcacggg aagaagcaca tagtggtctg tggccatatc 1141 acctacgatt cggtgtccca ttttcttcaa gatttcctac acgaggaccg tgatgacgtg 1201 gatgtcgaag tggtgttttt gcatcgtgtc gtgccggatt tggagctgga aggcttgttt 1261 aagcggcatt tcacaaaagt cgaatttttc acggggactg tcatggattc tctggatctt 1321 agcagagtca agatcgggga cgccgacgcc tgcctggtcc ttgccaacaa gtacagtacc 1381 aatccggacg ccgaggacgc cgcaaacatt atgcgtgtaa tttcgatcaa aaactactca 1441 tcggacatca gagttattgt gcaactaatg caatatcaca ataaggccta ccttctaaat 1501 atcccctcct gggactggaa acgaggtgat gacgtcatct gtctcgcgga gcttaagctc 1561 ggattcattg ctcaaagctg tctggcaccc ggattctcta cgatgatggc taatttattt 1621 gcaatgagaa gtttcaaaac gtcacaaacc acaccggact ggctgaacct gtacctttgc 1681 ggtgccggaa tggaaatgta caccgacacg ctatcccact cgttcgtcgg aatgactttt 1741 cctgaagctg tcgacctatt attcaaccgc ctggggcttc ttcttctggc gattgagctt 1801 aaagatgagg aaaataaaga atgcaatatt gcaatcaatc caggcccaca tattgtcatc 1861 cagcctcaaa ctcaaggatt tttcattgct cagagcgctg acgaggtgaa gcgggcgttt 1921 ttctggtgta agcagtgtca tgacgatatt aaggacgttt ccttgatcaa aaaatgtaaa 1981 tgcaaaaatt tggccctctt ccgtcgcaac accaaacact cgacagcggc ccgtgaaaaa 2041 aatgccaaaa tttcagatta ttcggacttt gacgctctgt tttatcagaa tgacgcaaga 2101 gccaccgatg tgctccagca gttccagcca caagcgccag caggtccgat gggccatttg 2161 ggccaacaag ttcagctaag gatgattaat caacagagtt cgacgagtga tactcatctc 2221 aacacgaaat cccttcgatt tgcctatgaa atcaaaaaac tcatgccatc ttccggagga 2281 cgccgaaatt cgatgagtat tccgccagac ggcaggggtg tcgattttag caaggatttt 2341 gagcagcaat tccaagacat gaaatatgac agtactggaa tgttccactg gtgtccatcc 2401 cgtaacctag aggactgtgt tctggagcgc caccaggccg ctatgaccgt actcaacggc 2461 cacgtggtgg tttgtttgtt cgctgatcag gattctccgc taattgggct ccggaacttc 2521 ataatgccac taagaagctc aaacttccat tatcatgagc tcaaacacgt ggttattgtg 2581 ggagacctgg aatatttgag gaaagagtgg aagacgctgt acaacttgcc gaaaatctcg 2641 attttgaatg gctccccgct atctcgagca gatttacgcg ccgtcaacat taacctctgc 2701 gacatgtgtg tcataatctc tgcccgggtc ccaaataccg aagataccac tttggcagat 2761 aaggaagcga ttctggcatc attgaacatt aaagctatgc aatttgatga tacccttggc 2821 tttttcccga tgaggcatca aactggcgat cggagcccgc tgggctcccc gatttccatg 2881 cagaagaagg gcgccaagtt tgggaccaat gtgccgatga ttacggagct tgttaacgac 2941 tcaaatgtgc aattcctcga ccaggacgac gacgacgatc cggacaccga gctctacctc 3001 acgcagccct tcgcctgcgg aactgccttc gccatttcag tgttggattc tttgatgagt 3061 actacctact tcaacgactc ggccctgacc ctcatccgaa ctctggtcac tggtggagcc 3121 acaccggagc ttgaacttat tctggcagaa ggcgccgggc tccgaggtgg ctacagtacc 3181 ccggagaccc tctcaaacag agatcggtgc cgaattgctc agatttcgct gcaggataac 3241 ccgtacgatg gagttgtgca caacactacc tatggtgcaa tgttcacgat agctctgagg 3301 aggtacggcc aactttgtat cgggctgtat aggcttcacg accaggataa tccggactct 3361 atgaagcgat atgttatcac taatcctcca gcagaattga ggattaaaaa tactgattac 3421 gtctacgtac ttgaacaatt cgatccggga ctggagtacg agccgggcaa acgacacttt 3481 tag //