Dbfetch
LOCUS NM_001260422 3555 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster snustorr (snu), transcript variant F, mRNA. ACCESSION NM_001260422 VERSION NM_001260422.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3555) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3555) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3555) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3555) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3555) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3555) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3555) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3555) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3555) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3555) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3555) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3555) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3555) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3555) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3555) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3555) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3555) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3555 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3555 /gene="snu" /locus_tag="Dmel_CG9990" /gene_synonym="CG9990; DmCG9990; Dmel\CG9990; Snu" /note="snustorr" /map="98E1-98E2" /db_xref="FLYBASE:FBgn0039594" /db_xref="GeneID:43391" CDS 447..2774 /gene="snu" /locus_tag="Dmel_CG9990" /gene_synonym="CG9990; DmCG9990; Dmel\CG9990; Snu" /note="CG9990 gene product from transcript CG9990-RF; CG9990-PF; snu-PF" /codon_start=1 /product="snustorr, isoform F" /protein_id="NP_001247351.1" /db_xref="FLYBASE:FBpp0293625" /db_xref="GeneID:43391" /db_xref="FLYBASE:FBgn0039594" /translation="MLISTISTDSAMAATNNDGGTQPNAVAAWGAPANGPRNTQAAVS VRHAFKAYGKKKNANQVLNNLNMTVPKGTIYGLLGASGCGKTTLLSCIVGRRYMDAGE IFVLGGKPGTRGSGVPGKRVGYMPQEIALYGEFSIQETMMYFGWIFGMDTKEILERLQ FLLNFLDLPSEKRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWN HLVHITKAGQKTVIITTHYIEEARQAHTIGLMRSGHLLAEESPSVLLSIYKCISLEEV FLKLSRIQSQKGDVTHVNFSNNISLHAMAFGSKMDKPSSSQEGGVVGLNFHQSKEVLI NDSNGSIYTLNQEPYSPPPSRRNNNPNDEESCQDCYSNLCKITSKGKIRALLTKNMLR MWRNVGVMLFIFALPVMQVILFCLAIGRDPQGLNLAIVNGEMNDTENCYWEDGCHFKN LGCRYLSHLNTSVVKTYYEDLDDAKEAVRKGTAWGAVYISENFTDAFIARANLGRDSD DETIDSSEVKVWLDMSNQQIGVMLNRDIQLAFRDFAMGLLGQCGSNPKLGDVPIQFRD PIYGTMNPSFTDFVAPGVILTIVFFLAVALTSSALIIERTEGLLDRSWVAGVSPFEIL FSHVITQFVVMCGQTTLVLIFMLVVFGVTNNGDLFWVIVLTLLQGMCGMCFGFLISSV CELERNAIQLALGSFYPTLLLSGVIWPIEGMPVVLRYISLCLPLTLATSSLRSILTRG WAILESDVYIGYVSTLSWIVGFLVLTLLVLRAKRG" ORIGIN 1 agtcttggcc gaacctttca gcgcaacgca agtgctccgg ttatacgctc cctcggtccg 61 ttcgtcgttt tttgtgtgaa cccccgtgga acgtcgacag atcccattca tcggcgatcg 121 agattacaag cgatcgcgtt cgtgtcctaa gtctttcgtt tggcaagaag tggattataa 181 aaagaaaccc gcgaaacgac tgaaattgtg tgcaaacata tttgctccca ggccaactag 241 tacgcgcatt caatgtgtgc ctgaaacaca taaaaagcac agtctcacag ccacttgggc 301 attgcaaaag attggcccgg cagcgaagta aaagtaaacg cttaacaaag taactagcat 361 ttagacaaag gcaaataaaa acaagcaata ggcgaagcaa agccaacaaa acaacaccca 421 ccatcgccaa aaaagaaaca aataaaatgc tgatatcaac tatttccaca gactccgcga 481 tggcggccac aaacaacgat ggtggcacgc agccgaatgc cgtggcggca tggggtgctc 541 cggccaatgg accccggaac acacaggccg ccgtatccgt gcggcatgcc ttcaaggcgt 601 acggaaagaa gaagaacgcc aaccaggtgc tgaacaacct gaacatgacc gtgcccaagg 661 gaacaatcta tggtcttctg ggagcctccg gatgtggcaa gaccaccctg ctctcctgca 721 tcgttggacg tcgttacatg gacgccggtg agatctttgt gctgggcggc aagcccggca 781 ctaggggatc aggtgttccc ggaaagcgtg tgggctacat gccccaggag atcgcactgt 841 acggagagtt ctccatccag gagaccatga tgtacttcgg ctggatcttc ggcatggata 901 ccaaggagat cctggaacgt ctacagttcc tgctcaactt ccttgatctg ccgtcggaga 961 agcgactggt gaagaatctc agtggtggtc agcagcgtcg tgtgagtttc gctgtggcct 1021 tgatgcacga tccagaattg ctgatcctgg acgaacccac cgtgggtgtg gatccactgc 1081 tgcgtcagag catctggaat cacctggtgc acatcaccaa ggcgggccaa aagacggtca 1141 ttattaccac acattatatt gaagaggcac gacaggcgca tacgatcggt ctgatgcggt 1201 cgggtcacct gctggccgag gagtcaccca gcgtcctgct ctccatctac aagtgcatca 1261 gcctggagga ggtattcctc aagctgtccc gcatccaaag ccaaaagggc gatgtgaccc 1321 acgtgaactt cagtaacaac atctcgttgc acgccatggc ctttggcagc aagatggaca 1381 agccgagttc cagccaggag ggcggcgtgg tgggcctcaa cttccaccag agcaaggagg 1441 tgctcattaa cgacagcaat ggctccatct acacgctcaa ccaggaaccc tacagtccgc 1501 cgccgtcccg gcgcaacaat aatcccaatg atgaggagag ctgccaggac tgctattcca 1561 acctgtgcaa gatcacctcc aagggcaaga ttcgcgccct gctcaccaag aacatgctcc 1621 gcatgtggcg caacgtgggc gtcatgctct tcatcttcgc cctgcccgtc atgcaggtga 1681 tccttttctg cttggccatc ggacgagatc ctcagggcct taacctggcc atagtcaacg 1741 gagagatgaa cgacacggaa aactgctatt gggaggatgg atgccacttc aagaacctgg 1801 gatgtcgtta tctgagtcat ttgaatacga gcgtagttaa aacatattat gaggacctgg 1861 acgatgccaa agaggccgtg agaaagggca cagcttgggg ggcggtctac atcagcgaga 1921 acttcacgga cgcctttatt gcccgagcta atttgggacg tgactccgac gacgaaacga 1981 tcgactcctc cgaggtcaag gtctggctgg acatgtccaa ccagcagatc ggcgtcatgc 2041 tcaatcggga catccagttg gccttcaggg acttcgccat gggccttctc ggccagtgcg 2101 gcagcaatcc gaaattgggc gacgtgccca ttcagttcag ggaccccatc tacggcacca 2161 tgaatccatc gttcaccgat ttcgtggcac ctggcgtgat cttgaccatt gtattcttct 2221 tggctgtcgc tttgacgtca tcggctctga tcattgagcg cactgagggc ttgttggatc 2281 gctcctgggt ggctggcgtc tcgcccttcg agattctatt ctcgcacgtg atcacccagt 2341 tcgtggtgat gtgcggacag accactctgg tgttgatctt catgctggtg gtgttcgggg 2401 ttaccaacaa cggcgaccta ttctgggtca tcgtgctgac cctgttgcag ggcatgtgtg 2461 gaatgtgctt tggcttcctc atctcctcgg tgtgcgagct ggagaggaat gccatacagc 2521 tggcgctggg ctccttctat cccaccctgc tgctgtctgg agtgatctgg ccgattgagg 2581 gcatgcccgt ggtgctgaga tacatatcac tgtgcctgcc actaacgcta gccacctctt 2641 cgctgcgctc catcctcaca cgtggctggg cgatactgga gtcggatgtg tacatcggct 2701 atgtgagcac gctgtcctgg attgtgggct tcctggtgct gacgcttctc gtgctgcgag 2761 ccaaacgcgg ctaggatctt cagatattac gctactttta gatgcctaac tttagaacac 2821 gataagtcgt cctaattagt ttacacccac ttcgggtctt cttcttaatt ccactttcga 2881 gtttcacttc ccttcgtatc tgcccaaatg tcataaatta tttaagcaca ttcgcagctt 2941 tccttagctt tccactcggc actcgttttt ccttagacta agttccgcac tttcgtagtt 3001 taaagcgtaa ggtttaggta ctcctaaatg aaatgttgta aatattttgt gtcacgaatt 3061 cagtaatccg ttgctctaga tgtccattat ttgcaaccct ctgtactaga ccttttctcg 3121 acgccgacac gggcagttta tcacatacaa acgcaactaa ttttatatat tttcaatgga 3181 ctgtgattgt tttttctaca taattcacgc gaatacacgt agggcaagcc taaacaaaaa 3241 gaaaacacaa tgaaaacgaa caaaaacaat ggtgggtttt gttattaaca ttaagtagct 3301 taaagcattt ttgtatgggt ttaagttttt taaggtaaaa cataattaaa tacaataatg 3361 tacgcaaccc taaagagtat gtaaaaatat atttcaggaa atattttgcg cagagcataa 3421 atatttcaca acgaacaaac ataagacaat gaacaacgaa caagtgaaaa acgttcttat 3481 ttaagtaaat attaatgtga acgcagttat gtataaataa taataaagcg tgaataaata 3541 aataaagtta aattt //