Dbfetch
LOCUS NM_001260030 3249 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster like-AP180 (lap), transcript variant F, mRNA. ACCESSION NM_001260030 VERSION NM_001260030.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3249) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3249) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3249) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3249) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3249) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3249) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3249) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3249) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3249) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3249) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3249) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3249) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3249) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3249) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3249) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3249) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3249) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3249) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3249) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3249) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3249) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3249) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3249) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3249) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jan 16, 2013 this sequence version replaced NM_001260030.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3249 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3249 /gene="lap" /locus_tag="Dmel_CG2520" /gene_synonym="AP180; BcDNA:GM10787; CG2520; dAP-3; Dmel\CG2520; EP(3)3060; EP3060; l(3)neo34; Lap; LAP; lap/AP180; sig" /note="like-AP180" /map="84D1-84D2" /db_xref="FLYBASE:FBgn0086372" /db_xref="GeneID:40863" CDS 419..2476 /gene="lap" /locus_tag="Dmel_CG2520" /gene_synonym="AP180; BcDNA:GM10787; CG2520; dAP-3; Dmel\CG2520; EP(3)3060; EP3060; l(3)neo34; Lap; LAP; lap/AP180; sig" /note="CG2520 gene product from transcript CG2520-RF; CG2520-PF; lap-PF; like AP180; complementation group 12; saisoog; EP3060; Like-AP180" /codon_start=1 /product="like-AP180, isoform F" /protein_id="NP_001246959.1" /db_xref="FLYBASE:FBpp0293684" /db_xref="GeneID:40863" /db_xref="FLYBASE:FBgn0086372" /translation="MTMAGQTINDRLLAARHSLAGQGLAKSVCKATTEECIGPKKKHL DYLVHCTNEPNVSIPHLANLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQYLASS NSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKSLSYRAMAFDFCK VKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDL IRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDKG DIPDLTKAPSSLLDALEQHLATLEGRKVSAANTPTQSSSSAFGTAAASSKFDTTNGID EQLKAQVLAEEEAAMNQYKSKVSSPTSSGAAGASAALTNPFLSSPPAAQAGQPIVDLF GAASAQPAAAAAATKASDDLLQLGNPFADMFDASGGGAAAVGATGFNGASVSSAAATN AFVSDSNFSSVFGNTEPAGFDALGDVLKPASASNNSNQMNVVAAGYSSNSSSILALQQ QQHQQHQQQHQHQLNQQQQQQPPAGTGKIITGDLDSSLMSLVDNLNINKTASAKPVQW NSPKNTAKPGANWTPQPMAATTGAGYRPMAHGMTVSPAPITINHPYIHASYPVMPNYM QGMPVMGQPSMMGGQAAAPLTGVQPTMMAAPHSNATGIMQPIQPTQNGSNKGVPLDPF GAL" ORIGIN 1 attgctcata cgctcgctcc atttgccagt cgccattatc gatttgtggc agaggaaaaa 61 tagagaatta aaaaatcgcg tttcagcgtt aggcaccggt tagagagcgc ataaaccgcg 121 gcgataaatt gtgtagtgat tgtgacgtag gaaccactaa atctttactg ttagtttaat 181 cgtgaggctc gcatagcaga gttttcccgt tcgaaatatt ctcaatcaat caatacctct 241 ctgtctctcg ctcgccccat acgcgtgtgt gtgtgtgtct ctctctccct ctctctgtat 301 ctgctttcga gtgtgtgtgt gtgtcggtgt ggtcagctcc tttggtgcat aattaaatta 361 atcaagtaaa taaaaaccag cgagcggcag cagaaacaac aacagcaaca gcttcatcat 421 gaccatggca gggcaaacga tcaacgacag gctgctggcc gcccgtcaca gccttgcggg 481 ccaaggactc gccaagtccg tttgcaaggc caccacggag gaatgcattg gcccgaagaa 541 gaagcacttg gactatttgg tgcactgcac aaacgagccg aatgtgtcga tacctcatct 601 ggccaattta cttatcgagc gttcacagaa tgccaactgg gtcgtcgtct acaagtcgct 661 gataaccaca catcatctga tggcatatgg caatgagcga tttatgcaat atcttgcctc 721 tagcaattct acattcaatc tcagctcctt tctggacaaa ggaactgtac aagatggtgg 781 catgggcgtt cctggtggca gaatgggtta cgatatgtct ccctttattc ggcgctacgc 841 caagtatttg aatgagaaat cgctctccta tcgagccatg gcctttgact tttgcaaagt 901 caaacggggc aaagaggaag gctcgctacg cagcatgaac gcggaaaaac ttctaaagac 961 tttgccagtt ttgcaggcac aattggatgc acttttggag ttcgactgcc aatccaacga 1021 cttgtctaat ggcgtcatca atatgagctt tatgctcttg ttccgcgatc tcatacgatt 1081 gtttgcttgc tacaatgatg gcatcataaa tttgcttgaa aaatatttcg atatgaacaa 1141 gaaacatgcc cgcgatgcgt tggatcttta caaaaagttc ttagtgcgca tggatcgtgt 1201 tggagagttt ttaaaagtgg ctgagaatgt gggcatagac aagggtgaca tacccgattt 1261 gaccaaggcg cccagttcgt tgttagatgc cttggagcag cacttggcca cgcttgaggg 1321 tcgaaaagta tccgctgcta atactcctac gcagtcatca agctcggcat ttggtactgc 1381 agctgcgtcc agcaaatttg ataccaccaa cggcattgac gagcagctta aggcccaggt 1441 tttggccgaa gaggaagccg ctatgaacca atacaagtcc aaggtgtcgt cgcccactag 1501 cagcggtgct gctggcgcta gcgctgcact aacaaatcca tttctatcgt cgccgccagc 1561 cgcgcaggct ggccagccga tagttgatct gttcggtgcc gcgtcggcgc agcccgctgc 1621 tgctgcagca gccaccaagg cctctgacga tctgctgcag ttgggcaatc ctttcgcgga 1681 catgtttgac gccagcggtg ggggagcagc tgctgtagga gccacaggtt tcaatggcgc 1741 atcagtttcc tccgctgctg ctacaaatgc attcgtttcc gatagtaatt tctcatccgt 1801 atttggtaat acggaaccgg caggcttcga tgccttgggc gacgtcctca agccggcctc 1861 ggccagcaac aacagcaatc aaatgaacgt tgtcgccgca ggttactcca gcaatagcag 1921 ttcgatccta gcgttacaac agcagcagca ccagcagcac cagcagcaac accagcatca 1981 actgaaccag cagcaacagc agcagccacc ggctggcact ggaaagataa ttaccggcga 2041 cttggatagt tcactaatgt cactcgttga taacttaaat attaacaaaa cggcaagtgc 2101 aaaacccgtg caatggaatt cacctaaaaa tacagcgaaa ccaggtgcta attggacacc 2161 ccaaccaatg gcggctacta ctggtgctgg ctatcgtcca atggcacatg gcatgactgt 2221 aagtcctgcg ccaatcacaa tcaatcatcc gtatatacat gctagttatc ctgtaatgcc 2281 aaattatatg cagggaatgc cggtgatggg acagccaagt atgatggggg ggcaggcagc 2341 agcccctttg actggggtgc aaccgacgat gatggcggcg ccgcacagta atgcaacggg 2401 catcatgcaa cccatccagc caacgcagaa tggcagcaat aaaggcgtcc cactcgaccc 2461 atttggtgcg ttataagcgg tccagaagaa gctcatacgt gcaacccact caccactcac 2521 tcactcactc agtctaagcg ctctaacctc atagacggaa aacagaaaac acactcacag 2581 acacaaatgc gtaatgaaaa attaaatata ccaatagctc tatatattat ataaacgtgc 2641 aagtgaatat taagatcttg aaactgttta cacgatgcta cagaaatcat atataaagtt 2701 tatgaaaaaa acggcagcaa tagcaaacac aaatgaaacg gaagcagata agaaaattat 2761 attataatgt tgaacattga gcaaaacacg aaaaatgcta tatacataca tatatacata 2821 tatatatata tatatatatt tatattatta ctatttaaat gaaaacaaat aagtttgact 2881 atttatatgt atacaccaat ttatatacta tgctaaaaca aatgaaggga aagtaaaagc 2941 aaaaacgaaa caatttccat caatagctaa aggaaggtag cctatgtgaa atatacctat 3001 gaactttaag aaaagtcctt ataaaacctg tagttgtgtc ctcaccaatc actaaaaaca 3061 cacacgttga attatgtagt ggaactatgt taactgtctc aaagcagatg atcgagcaaa 3121 catgaaaccg attcagaata gatattttca aacgaagtcc aagtgcttgc acaccttaac 3181 gtaatcattt gcaatatttt aatccgtcta tcaatgtttt tttgttattt ttagtcattt 3241 cttgtgact //