Dbfetch
LOCUS NM_001259259 3181 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster Myosin-7a binding protein (M7BP), transcript variant L, mRNA. ACCESSION NM_001259259 VERSION NM_001259259.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3181) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3181) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3181) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3181) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3181) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3181) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3181) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3181) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3181) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3181) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3181) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3181) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3181) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3181) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3181) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3181) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3181) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3181) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3181) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3181) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3181) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3181) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3181) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3181) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jan 16, 2013 this sequence version replaced NM_001259259.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3181 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3181 /gene="M7BP" /locus_tag="Dmel_CG43340" /old_locus_tag="Dmel_CG30492" /old_locus_tag="Dmel_CG30494" /gene_synonym="BcDNA:GH02712; BcDNA:HL07907; CG17983; CG17984; CG2080; CG2088; CG30492; CG30494; CG43340; CT6764; Dmel\CG43340" /note="Myosin-7a binding protein" /map="43E5-43E7" /db_xref="FLYBASE:FBgn0263077" /db_xref="GeneID:35698" CDS 462..2633 /gene="M7BP" /locus_tag="Dmel_CG43340" /old_locus_tag="Dmel_CG30492" /old_locus_tag="Dmel_CG30494" /gene_synonym="BcDNA:GH02712; BcDNA:HL07907; CG17983; CG17984; CG2080; CG2088; CG30492; CG30494; CG43340; CT6764; Dmel\CG43340" /note="CG43340 gene product from transcript CG43340-RL; CG43340-PL; M7BP-PL; myosin-7a binding protein" /codon_start=1 /product="Myosin-7a binding protein, isoform L" /protein_id="NP_001246188.1" /db_xref="FLYBASE:FBpp0297793" /db_xref="GeneID:35698" /db_xref="FLYBASE:FBgn0263077" /translation="MDFTLGLVTGMYAVLAVIVFYVVYVIEVKLDLPAIVNGHTNNSN NNNNNNHADSELADLSQTRLRSLIETIIAETLRSSTLSASGAVSEISLDTRSHVSDLA NGNGLKRRHRTEHYFEPKIYQDLLATAVLNKIVDKEGNTRLAAESTPDLSGRHIDENF NAEALSTTSGSSIEPRSDCSLTDHEIGLDNGKSQSLQTDLERESVLSDYIAAHMVPLP DFSASVTESEDDIGSISSGMIGDGNWEDNWLFKKKRSSATPSSIGMLVPAPRENVRAQ IGDKTTDEVSDLSEIGSDIEESSLDLLRCNDLNDRLLSKHLIGGQNTKMVLDELVDRT SLTSHTLPEENEPAFTETTNEFVVSPMAMPSDIKAPSPTPPPPPMIFQDDLLNEEPDH TPIAGSIAEREVKKWYNAVEMPNNPYSPEALKQRISGTQERYMDVPNISPSAEQKALA SALTENPDPPAPKADYKRYSRDYYINNAPTSTDSTGGGKAATTSAGEDVEDIVINEVN QEPEPHPPHGRISSGAQSTAADLSHWTLSTPVRRSSSLKFINSRPFHSPSPSLGYERS VPLERPSTSASHYRESSLGLGDDDDFDLRSQRSWRSSYSSLPKRHTQSSLSLHSNGSG VSFGSSVSKRRPAAGGPSAGVLTQFEKQLLHKDLKRNSFRAVSATSKDFVMNPLFESE PLGEKPALRPETEDQGDSGVDSCLNGFSGADAKYSNNSLLF" ORIGIN 1 agttgccaga tgcgacgcgt cgcgatcgta acgccaattc cgctccggcc caaaaagtcc 61 gtccgaaacg tgtgtgataa catggaataa gccaacaaca tacctcgcgt agtcgtgcat 121 agaacaagaa tttcggtcag cagatagagg aacttttcca tctgccagat aagaccttaa 181 gtcaaataga ccaagagcaa cgcattaagt gacgagctat cagcaacctt gaccccacac 241 taagttggca aaaaacatac atacatataa tgagcaaaat tgaaatcaat aatcgtgagc 301 agcccagccg accgttatat caatgaatgc tccaaacaaa accgaaacac aaacgtaaac 361 gtaaataaac aaataggcga gatattcacg attcagccgt atccgtatca gacgtagacg 421 atatttgcga gtgtatctac atatacatat atgcatgcag catggacttt actttgggcc 481 tagtcactgg catgtatgcc gttttggccg taattgtctt ttacgtggtt tacgtcattg 541 aggtgaaatt agatctgccg gccatcgtaa atggccatac caacaatagt aataataata 601 ataacaacaa ccatgcggac tccgagctgg ccgacctctc gcagacccga ctgcgcagtc 661 tcatcgagac catcatagcg gagaccctgc ggagctccac cctcagcgcc agcggagccg 721 tctcggagat cagcctggac accaggtctc acgtctccga tctggccaat ggaaacgggc 781 tgaagcggcg ccatcgcacc gagcactact tcgagccgaa gatctaccag gatctgttgg 841 ccacagcggt gctaaataag attgtggata aggaagggaa tacaaggctg gcggcggaga 901 gtacgccgga cttgagtggt cgccacattg acgagaattt caatgccgaa gcgctgagca 961 ccacgtccgg aagctccatt gaaccacgga gtgattgcag cctcaccgat catgaaatcg 1021 gactggataa tggcaaatcc caatccctgc aaacggactt ggaaagggaa tccgtgctta 1081 gtgactatat agccgcacac atggtgccac tgccggactt ttcagcatcc gtcaccgaat 1141 ccgaggatga tattggatcc atctcctcgg gcatgatcgg agatggaaac tgggaggaca 1201 actggctgtt caagaagaaa cgcagctcgg ccactccgag cagcattggc atgctggtgc 1261 cggcaccaag ggagaatgta cgtgcccaga ttggggataa gaccaccgac gaggtgagcg 1321 atctctccga gattggttcg gacatcgagg agagctctct ggatctgctg cgatgcaatg 1381 atctcaacga tcgtctgctc agcaagcacc ttattggtgg gcaaaacacc aagatggtcc 1441 tcgacgagct cgtagatcgc accagtctca cgtcccacac attgccggag gagaatgagc 1501 ccgcattcac agagacaacc aatgagtttg tggtatcccc gatggccatg ccttctgata 1561 taaaggcgcc ttctccgacg ccacctccgc caccaatgat attccaggat gacttgttga 1621 acgaggaacc agaccacact cccatcgcag gttccattgc ggaacgcgag gtgaagaagt 1681 ggtacaacgc cgttgaaatg ccaaataatc cgtactcccc ggaggccctg aagcagcgca 1741 tcagcggcac ccaggagcgc tacatggatg tgcccaacat cagtccgagt gctgagcaaa 1801 aggcactggc ttcggcgctg acggaaaatc cggatccgcc agcgcccaaa gcggattata 1861 agcgctatag ccgcgactac tacatcaaca atgctcccac atccactgac agcacggggg 1921 gtggaaaggc cgccacaacc agcgcaggcg aggatgtgga ggacatcgtg atcaacgagg 1981 taaatcaaga accagaacca catccaccgc atggccgcat ttcaagtggc gctcagagca 2041 ccgctgccga cctctctcat tggaccctat ccacgccagt gcgacgcagt agctcactaa 2101 agttcattaa cagccgcccc ttccactccc cctccccctc gctgggctac gagagatcgg 2161 tgcccctcga gcgaccttcg acctcggcgt cccattaccg cgaatcgagt ctgggtttgg 2221 gtgacgacga cgactttgac ctgagatcgc agcgctcctg gcggagcagc tacagttcac 2281 tgcccaagcg acacacgcag tcctcgctaa gcctgcacag caatggtagc ggggtgtcct 2341 ttggctcgtc cgtgtccaag agacgtccag cggcaggtgg gccctccgcc ggcgtgctca 2401 cccagttcga aaagcaactg ctgcacaagg acctcaagcg gaatagcttc cgggcggtgt 2461 ccgccacatc caaggacttt gtcatgaatc cgctcttcga gagcgagccg ctgggcgaaa 2521 agccggccct gcggccggag acggaggacc agggtgactc gggggtggac agctgcctga 2581 acggcttcag cggtgcggac gccaagtaca gcaacaatag tctgctattc taggagctct 2641 ggggatcatt ttggtcttag gccccacgat atttgccaaa ttacgcatag cttagtcaaa 2701 caaacagatg ttaaacacta gtcagtatag caaacccaat ttctctgtac atagcaaata 2761 ggatgggcat cggcgggaat agaaattacg aaattacaac aatattgaaa cacgggaaat 2821 tatgaggcag gcacagaatc tcccgcactg gaggggcaaa cgattccgac ctttccactg 2881 caccagcacc tgttgcacca accacgccac gcgaatgaga ggatcgagct agtgttctga 2941 tcgtagcttt agttaatacc acttacgtaa tgctaatgcc ctagagtatg caacgtttgt 3001 ttttaatcat tatacttgct gttaatttta tgaaataata tgataaatcc tgtaccgtat 3061 ctgtatgcac accgctaacg ctctttccaa cgaaacacca tacacatatg cctagcgata 3121 tctagaaatc tagaaatcta taatgcagta attccaaata aagccaaaca ataaaccaac 3181 c //