Dbfetch
LOCUS NM_001259218 3049 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster tetratricopeptide repeat domain 7, transcript variant B (Ttc7), mRNA. ACCESSION NM_001259218 VERSION NM_001259218.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3049) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3049) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3049) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3049) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3049) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3049) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3049) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3049) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3049) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3049) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3049) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3049) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3049) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3049) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3049) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3049) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3049) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3049) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3049) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3049) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3049) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3049) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3049) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3049) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jan 16, 2013 this sequence version replaced NM_001259218.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3049 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3049 /gene="Ttc7" /locus_tag="Dmel_CG8325" /gene_synonym="BcDNA:LD21719; CG8325; Dmel\CG8325; dTTC7; l(2)k14710; l(2)k15603; ttc7; TTC7; YPP1" /note="Tetratricopeptide repeat domain 7" /map="42A13-42A13" /db_xref="FLYBASE:FBgn0021847" /db_xref="GeneID:48387" CDS 182..2737 /gene="Ttc7" /locus_tag="Dmel_CG8325" /gene_synonym="BcDNA:LD21719; CG8325; Dmel\CG8325; dTTC7; l(2)k14710; l(2)k15603; ttc7; TTC7; YPP1" /note="CG8325 gene product from transcript CG8325-RB; CG8325-PB; Ttc7-PB; lethal (2) k14710; tetratricopeptide repeat domain 7" /codon_start=1 /product="tetratricopeptide repeat domain 7, isoform B" /protein_id="NP_001246147.1" /db_xref="FLYBASE:FBpp0297109" /db_xref="GeneID:48387" /db_xref="FLYBASE:FBgn0021847" /translation="MANKNMRNTTTKVEALIESCRSEGKWHRVIELTDELKTGSPHNE CLANFLVGEARLESYLEENALASDSNFGRAKSGLAEARRFLHLALGESGQKAGIALDA YLLLAKLCFACGEYEQSLDNFVKAELNTLAEKELTLRSLKILAESYAIKGLCLEQQTT KPSSKFKKAEKDTEMISCFERASDLGLLYLQEYDLVSGSSGSSNNSTAGSTLNVNAST VQPSSSSFAISSTIPASGPSGLEMNRRMGAILETALQRAPIVLIKTEKLQEAVERYRI MLNAIETRATQSLRLTLARQLAEVLLRGVSGTIYSPPFTGKSGGGTLRGGSSKKLWKP RKYAARQQFNPRNQQEEVILLLLIAEALAVRDTVLSQSPEFRQARQHAMGNVTAVYDL LTLATVRWGLVQLLNESFEKALKFSFGEQHVWRQYGLSLMAAEKHSHALRVLQESMKL TPSDPLPCLLASRLCYESLETVKQGLDYAQQALKREVKGLRPSRSQLFVGIGHQQLAI QSNLKSERDACHKLALDALERAVQFDGNDHLAEYYLSLQYALLGQLAEALVHIRFALA LRMEHAPCLHLFALLLTSSRRPREALGVVEDALHEFPDNLQLLHVKAHLQLHLEDAET ALGTVQHMLAVWRDVYEAQLAGEEEKHSDTKSGVHLAHSSQMSDKDSISRVEQALSEA ASSLSSFTQRPGPRRPWMLQIEIWLLLADVYLRIDQPNEALNCIHEASQIYPLSHQIM FMRGQVHVYLEQWFDAKQCFLNAVAANPNHTEALRALGEAHLVLGEPRLAEKMLKDAA KLDPSCPKIWFALGKVMEILGDFHASADCFATSLQLEPSCPVLPFTSIPLVFE" ORIGIN 1 tgccatatgt gagaaagaag aagagcgaag aaaacagata actccaatgt ttgcaaaaca 61 atttgattag tcttgaagga atccgcttta ggctcttagg aacccgcttt atagcgagca 121 caggcacgca ctggcacaca cagcaagcaa agagtgacaa cattatccgt gaagtggaca 181 tatggccaac aagaacatgc gtaacaccac aaccaaagtg gaggccctga ttgagagctg 241 tcgcagcgag ggcaagtggc accgggtcat cgagctaacg gatgaactga agaccgggtc 301 cccgcacaat gagtgcctgg ccaactttct ggtgggggaa gctcgtctgg agagttacct 361 ggaggaaaac gctctcgcgt cagactcaaa ttttggtcgc gccaagtctg gattggcgga 421 ggcccggcgt ttccttcact tggctttggg tgagagtggc cagaaggcgg gcatcgccct 481 ggacgcctat ttgctgctgg ccaagctgtg ctttgcctgc ggcgagtatg agcagagtct 541 agacaatttc gtcaaggcag aactcaacac gcttgccgag aaggagctga cccttcgcag 601 cctgaagatc cttgcggaat cgtatgccat caagggattg tgtctggagc agcagactac 661 gaagccgtca tctaagttta agaaggccga aaaggacacg gaaatgatta gctgttttga 721 gcgcgcatct gatctggggc tgctctatct gcaggaatac gatctcgtta gtggaagcag 781 tggctcgtcc aacaactcga cagctggttc tacgttgaat gtaaacgcct ctactgtgca 841 gccgtcgagc agcagttttg caatcagcag tacaataccg gcgagtggtc caagtggact 901 ggaaatgaac cgcaggatgg gcgccatcct agagaccgcc ctgcaacggg cacccatagt 961 gcttattaag acggaaaagc ttcaagaggc cgttgaacgg tatcgaatca tgctaaacgc 1021 catcgaaacg agggctactc aatcgttgcg cctcacgctg gcccgccagc tagctgaggt 1081 tcttttgaga ggggtctcgg gcacgattta ctcgcctcct tttaccggaa aatctggagg 1141 tgggacgctg cgaggaggat cctccaagaa actttggaaa ccgcgtaaat acgcagcccg 1201 ccagcagttt aaccctcgga accagcagga agaggtaatt ctgttgctac tcatagccga 1261 ggcactggct gtgagggata cagttttgtc gcagagtcca gagtttagac aggcccgtca 1321 gcatgctatg ggcaacgtta cggccgtcta tgacctcctg acgttggcta ctgtgcgctg 1381 ggggctcgtc cagctattaa atgagtcctt tgagaaggcg ctaaagttta gctttggtga 1441 acagcatgtg tggcggcagt acggcttaag tttgatggca gccgaaaagc actcgcacgc 1501 tttaagggtc ttgcaagaat caatgaagtt gactcctagt gatcctttgc catgtctgtt 1561 ggcttctcgc ctttgctacg agagtctgga gacggtaaag caaggtctgg actatgctca 1621 gcaagcgctg aagcgcgaag taaagggctt gcgaccatcg cgaagccaac tctttgtggg 1681 catcggtcac caacagctag ccatccagtc aaatcttaaa agcgagcgag atgcttgtca 1741 caagctggct ttggacgccc tggagcgcgc tgtgcagttt gatgggaacg accacctggc 1801 ggaatactac ttgtcgttgc agtacgcact tctgggacag ctggcggagg cattggttca 1861 tatccgtttc gcgctggcgt tgcgtatgga acatgcgcca tgtctacacc tgttcgcact 1921 gttgctgaca tcgtcgcgcc gacctcgtga agctttggga gttgttgagg atgctttaca 1981 cgagtttccc gataacctgc agctactgca cgttaaggca catcttcagc tgcatctaga 2041 ggacgcggag acggcgttgg gcactgtgca gcacatgctg gccgtgtggc gggacgttta 2101 cgaggcccag ctagcgggag aggaggaaaa gcactcagac accaagagtg gtgttcactt 2161 ggcacattcc tcacagatgt ccgacaagga ttcaatctcc cgcgttgaac aggctctgag 2221 tgaagcagca agctcattga gctcatttac gcagcgtcct ggaccccgac gaccctggat 2281 gctacagatt gaaatatggc ttctgctggc tgatgtctat ctgcggattg atcagccgaa 2341 cgaggcactc aactgcatac acgaagcctc acagatttat ccgctttcgc atcagattat 2401 gtttatgcgt ggccaggtgc atgtctattt ggagcaatgg tttgacgcca agcaatgttt 2461 cctgaacgcc gtggccgcca acccaaatca cacagaggct ttgcgtgcgc ttggagaggc 2521 gcatttggta ctgggcgagc cgaggttggc tgaaaaaatg ctaaaagatg cggccaaact 2581 ggatccgagc tgtccaaaaa tttggttcgc actgggaaag gtgatggaga tcctgggcga 2641 tttccatgcc tcagccgatt gcttcgccac gtcgctgcag ttagagccat catgtccggt 2701 gctacctttt acttctatac ctttggtgtt tgaataggaa cactttcgtg tctaattcga 2761 agcttgacaa acctcaaagt caacagcaat actagaatta tacttcctaa ttccttcagt 2821 gtaaaaattg ttgtatcgca gttttggagc aacaaatgtt taaatattgt ttgtgtgtaa 2881 attattacca agaattgttc gagcttggct gtattatgtg aatgaaccat tctgctatct 2941 tccttaatca cccactttta aggagatggt tcggttaaat ttattactct attaggtgtt 3001 gttaattaca tacaaaattg gttattatat aaatatacag tatttcgtg //