Dbfetch
LOCUS NM_001258675 3315 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant E (CG15312), mRNA. ACCESSION NM_001258675 VERSION NM_001258675.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3315) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3315) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3315) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3315) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3315) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3315) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3315) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3315) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3315) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3315) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3315) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3315) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3315) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3315) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3315) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3315) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3315) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3315) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3315) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3315) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3315) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3315) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3315) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001258675.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3315 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3315 /gene="CG15312" /locus_tag="Dmel_CG15312" /gene_synonym="CT35293; Dmel\CG15312" /map="9B1-9B1" /db_xref="FLYBASE:FBgn0030174" /db_xref="GeneID:31940" CDS 404..1648 /gene="CG15312" /locus_tag="Dmel_CG15312" /gene_synonym="CT35293; Dmel\CG15312" /note="CG15312 gene product from transcript CG15312-RE; CG15312-PE" /codon_start=1 /product="uncharacterized protein, isoform E" /protein_id="NP_001245604.1" /db_xref="FLYBASE:FBpp0301159" /db_xref="GeneID:31940" /db_xref="FLYBASE:FBgn0030174" /translation="MSSTSSSVLTLSSFNLLFFTQVLTVLSSTIKYNEYATDKGGNVS IPCIAQGNIMWVKEHGNNSTIVQTGRVLVLRNVSTTDAGIYVCFASVPRPSTTATSAT TSPQNLQDKETRPLEDEDDGQGESVSPKDDQLKEAEMEEEVEYLAHQRTKLIVRTVPG PVSQLYFKASTILGFLIWRFNKTQSGGYPVRSFTAEYRNVSYKTPPANASFEHAWSRM DPINIAFNVRQMEVYRLAPNTTYEFRIWANNELGSGEVVTTNVTTLPETKEEELQDGW DSIELIPNIILNPGFSESDGGPEPGGQGHGGSAGDQDAGEDDDDDVAMPFPRTIIFGQ HHRTPPPPRLHLPPQHHRHQNQSHHHQYHHQQNQQQHHHHHLRRQDDDDDDDYEEEHE PTMERFKRKVSVFFTGPTIKRI" ORIGIN 1 tcagtcgagc gacgcaactc gaacgcaacg gtacatgagt ggcggttggc gagcgaaccc 61 agtgtcccgt tatcaacaac aactctccaa acaccgaact gcagttgaat taagccacca 121 aatacttcgt gttttttttt tcaagttcca tagatgtagt acagtacgac agttactcaa 181 ttactcaatt gcaacttcca aagaattcgc gtagtgcgaa aatcgccaaa aatcagcagc 241 cgcactttga agttacgtca aaaggagtcg tgaaagagga agaacgagag tgagggagag 301 agagagagcc ggctttggtc aaaagggagg gggtgataaa gctagcagga agagcagcca 361 aaggaggctt atgtaaagcg tgcttcgagc gtgctatgga agcatgtcgt ccacttccag 421 ctccgtgcta acgttgtcat cgtttaatct attatttttc acccaagtgc tcacggtact 481 cagctcgacg atcaagtaca acgaatacgc gacggacaag ggcggcaatg tgagcatacc 541 gtgcatagcc cagggaaaca taatgtgggt gaaagagcac ggcaacaaca gcacgatagt 601 tcagactggt cgtgttctcg tcctgcgaaa tgtgagcacc acggatgcgg gaatctacgt 661 atgctttgcg tcagtgccac gcccatcgac aacagcaaca tcagcaacta cctcaccgca 721 aaatctgcag gataaagaaa cgcggccact ggaggatgag gatgatggcc aaggggaaag 781 cgtatccccc aaggatgacc agctgaagga agccgaaatg gaggaggaag tggagtatct 841 agcccaccag cgaaccaagc tcatcgttcg cactgttccg ggtccagtgt cgcagctata 901 cttcaaggca tccacaatac tgggtttcct catctggcgc ttcaataaga ctcaatccgg 961 tggctatccg gtgcgcagct ttacggcgga gtaccgcaac gtctcctaca agacgccgcc 1021 ggcgaatgcc agtttcgagc acgcctggag caggatggat ccgatcaaca tagcctttaa 1081 tgtgcgccaa atggaggtct atcgcctggc acccaacacc acctatgagt ttcggatatg 1141 ggccaacaat gaactgggca gcggcgaggt ggtcaccacc aatgtgacca cgctgccgga 1201 gacaaaggag gaggaactgc aagatggttg ggacagcatt gagctcatac cgaacataat 1261 acttaatccc ggtttcagcg agtcggacgg cggaccagag cctggtggcc aaggtcatgg 1321 gggcagtgct ggcgatcagg atgctgggga ggatgacgat gacgatgtgg ccatgccatt 1381 tccgcgcacc atcatctttg gccagcacca tcgaacgcct ccgccgccgc gtttgcattt 1441 gccaccgcag caccaccgcc atcaaaacca gagccaccac catcagtatc atcatcagca 1501 gaaccagcag cagcaccacc accaccacct acggcggcag gacgacgatg atgacgacga 1561 ctacgaggag gagcacgaac ccaccatgga gcggttcaag cgtaaagtct ccgtcttctt 1621 caccggaccc accatcaagc gtatttgaga cgtatttgag tacaaacact ggtcaccaag 1681 gttgttgcat tgctgcttga ttggatagtt aggatccacc tctacatcat atacatagat 1741 atagaaatga gagagagctt atcgatcgat cgaatgtttc gttttcattt cggtttcctg 1801 tccaagcttc aactatgaaa taccaaaaaa aaaaaaaaaa aaaaacaaag aacgccacaa 1861 atcgccagag attttgattt agagctcatt gcattgcttc tatgccccga atcacaacta 1921 tatagtatat atacacgtat tataaatata aaccaaaaca aatatattgc tgtgatacaa 1981 attcaattga acgaacattg taaggattta ccataaagca cacgaaacac caaaaaccca 2041 gctattaacc atcatgaatt tgctgaagct cgtagctata aagctcatat tgtattttgt 2101 ctagttaaac acgctatctg agttacagcc actggattat tcagatccac atatatagac 2161 gacagaattt agcggacaag ttagcttaga gcctcaaaaa tcgcccaaaa gagatctgtt 2221 accaagtact aatcaatata aatgtcctta cacccagtcc gtttgtctgt tagcccgaac 2281 taatgctttt ctgtaattgt aactgatttt ataatattta aaattaaatt agtcaattgt 2341 aacagatctc tgatagtctc tgatagatac cggactatat cgtttgaact tgtccttgtt 2401 ttggttccgt tgtaaagatt taacaaactg tgaaacaatt ttataattga gcaaatattt 2461 tgcactgtag agcgcaccaa acgatctata tatagatata taaatatata tatatatata 2521 tatttaaaac cgtgaaaaac gtttgataaa cattttaaat aaacggcaaa atgccttgtg 2581 ctttagttcg gcctcaaagc taaataaatt gattatgata tgatatagga atatttatta 2641 acgtagttaa agtagcctga aaaccaaata ttcaaagaaa tgaaaataaa aattgcttcc 2701 actcacagta aacaaaatct aaacaatgaa attgttataa aagataaatc aaaactaatt 2761 ttaaacaagc gaatattgtg aatataccga agcaaaaaaa aaatatatat atatatagtg 2821 agaacgatca caaaatgtgt ggaatgtaca taaagatagc gagtgggtat cttaagaaag 2881 actgtagtta atatttaaga cactttggcc tgcgctttta ccaatatttt tgtggcccaa 2941 cttggcccga actccttggt tccaacaata ttttgcattg atatgctaga gctaccaaca 3001 agtatatagt attaatattt ctaacaattc ggaatgtgca cttaactaag cgaagattga 3061 aactaaaaat cagaagatgg aaacatccta tttaaatagg tggaagttta aataagcaaa 3121 agtctctcgc ctaagccctg atcctaaact cttggctgta tttctaattg ttatcgcttc 3181 atgttgaggt ttattgttat aacgccagcc tcccatgagc aatactcccc ccaaattacc 3241 gtaaacaaat tattttctaa tctgagccca agccataagt ggagaagatt agacctcaac 3301 accacaaaaa caccg //