Dbfetch
LOCUS NM_001258674 3082 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant D (CG15312), mRNA. ACCESSION NM_001258674 VERSION NM_001258674.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3082) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3082) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3082) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3082) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3082) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3082) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3082) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3082) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3082) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3082) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3082) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3082) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3082) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3082) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3082) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3082) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3082) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3082) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3082) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3082) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3082) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3082) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3082) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001258674.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3082 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3082 /gene="CG15312" /locus_tag="Dmel_CG15312" /gene_synonym="CT35293; Dmel\CG15312" /map="9B1-9B1" /db_xref="FLYBASE:FBgn0030174" /db_xref="GeneID:31940" CDS 468..1862 /gene="CG15312" /locus_tag="Dmel_CG15312" /gene_synonym="CT35293; Dmel\CG15312" /note="CG15312 gene product from transcript CG15312-RD; CG15312-PD" /codon_start=1 /product="uncharacterized protein, isoform D" /protein_id="NP_001245603.1" /db_xref="FLYBASE:FBpp0301158" /db_xref="GeneID:31940" /db_xref="FLYBASE:FBgn0030174" /translation="MSSTSSSVLTLSSFNLLFFTQVLTVLSSTIKYNEYATDKGGNVS IPCIAQGNIMWVKEHGNNSTIVQTGRVLVLRNVSTTDAGIYVCFASVPRPSTTATSAT TSPQNLQDKETRPLEDEDDGQGESVSPKDDQLKEAEMEEEVEYLAHQRTKLIVRTVPG PVSQLYFKASTILGFLIWRFNKTQSGGYPVRSFTAEYRNVSYKTPPANASFEHAWSRM DPINIAFNVRQMEVYRLAPNTTYEFRIWANNELGSGEVVTTNVTTLPETKEEDLIRLI KPDLDNFDPRIWIVAVSIVLGTLVILAIGLCIVLSKECYQSAQMELQDGWDSIELIPN IILNPGFSESDGGPEPGGQGHGGSAGDQDAGEDDDDDVAMPFPRTIIFGQHHRTPPPP RLHLPPQHHRHQNQSHHHQYHHQQNQQQHHHHHLRRQDDDDDDDYEEEHEPTMERFKR KVSVFFTGPTIKRI" ORIGIN 1 tcagtcgagc gacgcaactc gaacgcaacg gtacatgagt ggcggttggc gagcgaaccc 61 agtgtcccgt tatcaacaac aactctccaa acaccgaact gcagttgaat taagccacca 121 aatacttcgt gttttttttt tcaagttcca tagatgtagt acagtacgac agttactcaa 181 ttactcaatt gcaacttcca aagaattcgc gtagtgcgaa aatcgccaaa aatcagcagc 241 cgcactttga agttacgtca aaaggagtcg tgaaagagga agaacgagag tgagggagag 301 agagagaggt agcaagagag ccgtaagaaa ataacaacaa ggcagaagca cgcgatagga 361 gtaactgtaa atccggcttt ggtcaaaagg gagggggtga taaagctagc aggaagagca 421 gccaaaggag gcttatgtaa agcgtgcttc gagcgtgcta tggaagcatg tcgtccactt 481 ccagctccgt gctaacgttg tcatcgttta atctattatt tttcacccaa gtgctcacgg 541 tactcagctc gacgatcaag tacaacgaat acgcgacgga caagggcggc aatgtgagca 601 taccgtgcat agcccaggga aacataatgt gggtgaaaga gcacggcaac aacagcacga 661 tagttcagac tggtcgtgtt ctcgtcctgc gaaatgtgag caccacggat gcgggaatct 721 acgtatgctt tgcgtcagtg ccacgcccat cgacaacagc aacatcagca actacctcac 781 cgcaaaatct gcaggataaa gaaacgcggc cactggagga tgaggatgat ggccaagggg 841 aaagcgtatc ccccaaggat gaccagctga aggaagccga aatggaggag gaagtggagt 901 atctagccca ccagcgaacc aagctcatcg ttcgcactgt tccgggtcca gtgtcgcagc 961 tatacttcaa ggcatccaca atactgggtt tcctcatctg gcgcttcaat aagactcaat 1021 ccggtggcta tccggtgcgc agctttacgg cggagtaccg caacgtctcc tacaagacgc 1081 cgccggcgaa tgccagtttc gagcacgcct ggagcaggat ggatccgatc aacatagcct 1141 ttaatgtgcg ccaaatggag gtctatcgcc tggcacccaa caccacctat gagtttcgga 1201 tatgggccaa caatgaactg ggcagcggcg aggtggtcac caccaatgtg accacgctgc 1261 cggagacaaa ggaggaggat ctcatacgcc ttataaaacc cgacctagac aatttcgatc 1321 cacgcatttg gatagtggcc gtcagcatag tgctcggaac ccttgtgata ttagcgatcg 1381 gactctgcat tgtgctctcc aaggagtgct atcagtcggc gcaaatggaa ctgcaagatg 1441 gttgggacag cattgagctc ataccgaaca taatacttaa tcccggtttc agcgagtcgg 1501 acggcggacc agagcctggt ggccaaggtc atgggggcag tgctggcgat caggatgctg 1561 gggaggatga cgatgacgat gtggccatgc catttccgcg caccatcatc tttggccagc 1621 accatcgaac gcctccgccg ccgcgtttgc atttgccacc gcagcaccac cgccatcaaa 1681 accagagcca ccaccatcag tatcatcatc agcagaacca gcagcagcac caccaccacc 1741 acctacggcg gcaggacgac gatgatgacg acgactacga ggaggagcac gaacccacca 1801 tggagcggtt caagcgtaaa gtctccgtct tcttcaccgg acccaccatc aagcgtattt 1861 gagacgtatt tgagtacaaa cactggtcac caaggttgtt gcattgctgc ttgattggat 1921 agttaggatc cacctctaca tcatatacat agatatagaa atgagagaga gcttatcgat 1981 cgatcgaatg tttcgttttc atttcggttt cctgtccaag cttcaactat gaaataccaa 2041 aaaaaaaaaa aaaaaaaaac aaagaacgcc acaaatcgcc agagattttg atttagagct 2101 cattgcattg cttctatgcc ccgaatcaca actatatagt atatatacac gtattataaa 2161 tataaaccaa aacaaatata ttgctgtgat acaaattcaa ttgaacgaac attgtaagga 2221 tttaccataa agcacacgaa acaccaaaaa cccagctatt aaccatcatg aatttgctga 2281 agctcgtagc tataaagctc atattgtatt ttgtctagtt aaacacgcta tctgagttac 2341 agccactgga ttattcagat ccacatatat agacgacaga atttagcgga caagttagct 2401 tagagcctca aaaatcgccc aaaagagatc tgttaccaag tactaatcaa tataaatgtc 2461 cttacaccca gtccgtttgt ctgttagccc gaactaatgc ttttctgtaa ttgtaactga 2521 ttttataata tttaaaatta aattagtcaa ttgtaacaga tctctgatag tctctgatag 2581 ataccggact atatcgtttg aacttgtcct tgttttggtt ccgttgtaaa gatttaacaa 2641 actgtgaaac aattttataa ttgagcaaat attttgcact gtagagcgca ccaaacgatc 2701 tatatataga tatataaata tatatatata tatatattta aaaccgtgaa aaacgtttga 2761 taaacatttt aaataaacgg caaaatgcct tgtgctttag ttcggcctca aagctaaata 2821 aattgattat gatatgatat aggaatattt attaacgtag ttaaagtagc ctgaaaacca 2881 aatattcaaa gaaatgaaaa taaaaattgc ttccactcac agtaaacaaa atctaaacaa 2941 tgaaattgtt ataaaagata aatcaaaact aattttaaac aagcgaatat tgtgaatata 3001 ccgaagcaaa aaaaaaatat atatatatat agtgagaacg atcacaaaat gtgtggaatg 3061 tacataaaga tagcgagtgg gt //