Dbfetch
LOCUS NM_001258584 3335 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster Mnt, transcript variant J (Mnt), mRNA. ACCESSION NM_001258584 VERSION NM_001258584.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3335) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3335) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3335) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3335) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3335) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3335) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3335) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3335) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3335) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3335) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3335) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3335) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3335) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3335) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3335) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3335) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3335) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3335) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3335) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3335) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3335) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3335) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3335) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001258584.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3335 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3335 /gene="Mnt" /locus_tag="Dmel_CG13316" /gene_synonym="bHLHe43; CG13316; CG2856; dMad; Dmel\CG13316; DmMnt; dmnt; dMnt; EG:114E2.2; Mad; Mad-3E; mnt; MNT" /map="3E2-3E5" /db_xref="FLYBASE:FBgn0023215" /db_xref="GeneID:31331" CDS 653..2404 /gene="Mnt" /locus_tag="Dmel_CG13316" /gene_synonym="bHLHe43; CG13316; CG2856; dMad; Dmel\CG13316; DmMnt; dmnt; dMnt; EG:114E2.2; Mad; Mad-3E; mnt; MNT" /note="CG13316 gene product from transcript CG13316-RJ; CG13316-PJ; Mnt-PJ" /codon_start=1 /product="Mnt, isoform J" /protein_id="NP_001245513.1" /db_xref="FLYBASE:FBpp0298279" /db_xref="GeneID:31331" /db_xref="FLYBASE:FBgn0023215" /translation="MSGIGGIGVLLEAAQFLEQHEKLPQAGGGGGSALGVGVALPQQQ QQTVHCKSNSIINNNNSSQHNRNSSSSSNGIIATPPFTNGNGNGTVGVGNASAIFNVS VNANGNGLSNGHSSPRSQLAAAATAHDYEYSAAGVANGHSEGRPHVSAARDQQDHPQH QQHANHMQIQQHYGYMRSNIGGVIYGLHKDSADSAASSACGAGAGAAAVGMSIASSAP AAGSQLSAHHHTGHGGRRRTTSSNSNGAGTREVHNKLEKERRAQLKECYDLLKKVLPM GDEDRKKTSNLTILDTAHKYVNSLSHEVCEQEAKIEKLAKQKIELQKRLKQLSLRRES PPTDQQIIPQADKAVCLATTATTAPPTAASGHNGTTILFDAGNACATGQQLTTVINKT NGGATAAASSKHNGNHTGGATTTLTPAMGIMTIKNGNGSNGNMLAISPTGGHNHQLHQ HHNGSPAGSPSGIGATTGATITRGSPTPSTPSPSPSSSSSGVSLSTSFMGGSSSSSSS SSSSSSSSSSSSSSSPTQQQQIITPTATARSVGLKFHGGAGAAVPAGGGSVNGFHQAD KDRNYTFLRLSAGTTAQ" ORIGIN 1 tcattttacg tttttttgcc gtagggtgcg cgtcgcagtc gccgtcgccg cagacgtcac 61 actctgaaag ttgcgtcagt tcaaaaaact taaatagtta ttaaaaaaag gaaacaaaaa 121 ccaaatcaac ttgaaacaaa acgcccaaat tataagcaac agaaagctag aaccaccgaa 181 caatcaacat ctaaagcggc aaaaaaaaac tcatcagctt cgaagcaaca aaacaaacca 241 caatcagtaa ccatttttaa caaacaattt tgtaaacaat atttgaaacc aaaaccattt 301 tcaaaaactt ttaacaatca tttaagtaac aacaaatacg aaggattcaa ccaaaattta 361 tacaaaaaat aagaactgaa ccaattctca acaccaattc aacaactatt tcaacaaata 421 actgtaaacg tgtcgcgact caaagctcct cccgctatcc tgctctctcg cgtaaactcg 481 tcgccatcgt ctttttccgt tgtggtgtac gattttggtg ttttttctcc aaaatatata 541 tatttattgt tctacgcgtt cgtcgtcctt gtcccgtgcg tgagaccttg tcctcgtgtg 601 cgtctgtgtg tgtgcgtgtg cgagaagagg agtgcggtag tttgtgtatg ctatgtcagg 661 gatcgggggc attggggtgc tcctcgaggc ggctcaattt cttgagcagc atgagaagct 721 cccgcaggcg ggaggcggcg gcggtagcgc cctgggcgtg ggcgtggcac tgcctcaaca 781 gcagcagcag acggtgcact gcaagagcaa ctccattatc aacaacaaca atagcagcca 841 gcacaataga aatagcagca gtagcagtaa cgggattatt gcaacgccac cgttcacgaa 901 cggaaatggc aacggtaccg tcggcgtcgg taacgcgagc gccattttca acgttagcgt 961 caatgcgaac gggaacggtc tgagcaacgg tcacagcagt ccgcgcagtc aattagccgc 1021 cgcagccact gcccacgatt acgagtatag cgccgccgga gttgccaatg gacacagcga 1081 aggtcgcccc cacgtctcgg cagccaggga tcagcaggac catccgcagc atcagcaaca 1141 tgccaaccat atgcagatcc agcagcatta cggctatatg aggagtaaca ttggcggcgt 1201 gatctatggc ttgcacaagg actctgccga ctctgcggca tcctcggcat gtggagcggg 1261 agcgggagca gcagcggtgg gcatgagcat tgcctcctcg gcgccagcgg cgggatctca 1321 gctatcggcg catcatcaca cgggacacgg aggccgcagg cgcaccacca gttccaatag 1381 taatggagcg ggcacccggg aggtgcacaa caagctggaa aaggagcgac gcgcccagct 1441 gaaggagtgc tatgacctgc tcaaaaaggt gctgcccatg ggtgacgagg accgaaagaa 1501 aacatcaaac ttgacaatac ttgacacggc ccacaaatat gtcaattcct tgagtcatga 1561 agtttgcgag caggaggcga agatagagaa actggccaag cagaagatcg agctgcagaa 1621 gcggctaaag caactgagct taaggaggga atcgccgccc accgatcagc aaatcattcc 1681 acaggccgac aaagcagttt gtctggcaac aacagccaca acagcaccac caacggcggc 1741 cagtggccac aatggaacca caattctatt cgatgcaggc aacgcctgtg ccactgggca 1801 gcagctaaca actgtgataa acaaaactaa tggaggagca accgcagcag ccagcagcaa 1861 acacaatggc aaccacacag gaggtgcaac aaccacactg actccggcca tgggcatcat 1921 gacaattaaa aatggcaatg gcagcaacgg caacatgctg gcaatctcac caacgggagg 1981 ccacaatcat cagttgcacc agcaccacaa cggcagccca gcgggcagtc catcgggaat 2041 aggagccaca actggagcca ccatcacacg tggctcgcca acgccatcga ctccatcgcc 2101 gtcgcccagc tcctcgtcca gtggcgtctc gttgtcgacc tcatttatgg gcggctcctc 2161 atcatcgtcc tcatcctcct catcatcatc atcttccagt tcgtcgtcca gttcttcgtc 2221 gcccacgcaa caacagcaga taatcacgcc cacggccaca gcccgtagtg ttggcctaaa 2281 attccatggc ggtgcgggcg ctgctgtgcc agctggcgga ggttcagtga atgggttcca 2341 tcaggccgat aaggatcgca attacacttt cctgaggctc agtgctggga caacggcaca 2401 gtaacccaac cagtaaccca agcaaacaac aaacaaccac aacaataacg aaaacaacaa 2461 caacaacaac aacaacaact gaaatgtgcg caacagctcc caccttatga gaaagtaaca 2521 actagaagaa ggttctctga aaactctttt ttaaagccag atgaaaacat gcgtattttc 2581 cacactttcg cacacattga aaatattaat acaaaaaaac ggtagcaaac aacaaaagca 2641 agtcattaaa gctgcaattt tgtaaaaaaa aaaacaacaa caaaaaaatg taatagataa 2701 aaacaaaagc tatcaaacag ttccgcccaa cacttagcat cgattttgaa aatcaacaaa 2761 atgaagagaa aaattatttt ttaatgaata attttaaagc aacaacaaaa acgcgagaga 2821 aaacgctagc aacaccaaca ataaaccaac atcaacaaga gaagaccaat taagtgaata 2881 ttaaacagca acgacaccgg cactcaacca caacaacaac aacaacaaca gcttaaaact 2941 cctcaacaac ccacaacaca ccgcggccca tcaactgcat atataccaca taactatata 3001 tctaattata ttactttata gtaaaaacca agaaaagaag agaaaacaca ccaagaatag 3061 cacagttaaa tgtaaaacag gaaaaaacaa aaccaaatgc gctgttgaaa cagaaaccac 3121 caatgggtaa cgctttataa atatatatat ctctaaatat atatatatat atatacatac 3181 ctaaaaataa gaagaagaag attataaatt agaaatatgt aaaagcagaa tttccaaaat 3241 tcatgtggca aagaaaaaat gataaaacga aattcagata gaagtctcct ttctcgacca 3301 aaactgaaaa cacaaacaga aataatttct cttgg //