Dbfetch
LOCUS NM_001202387 4026 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant A (CG42740), mRNA. ACCESSION NM_001202387 VERSION NM_001202387.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 4026) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4026) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 4026) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 4026) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 4026) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 4026) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 4026) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 4026) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 4026) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 4026) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 4026) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 4026) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 4026) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 4026) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 4026) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 4026) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 4026) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 4026) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 4026) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 4026) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 4026) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 4026) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 4026) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 4026) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4026 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..4026 /gene="CG42740" /locus_tag="Dmel_CG42740" /gene_synonym="Dmel\CG42740" /exception="dicistronic gene" /map="99F3-99F4" /db_xref="FLYBASE:FBgn0261704" /db_xref="GeneID:10178837" CDS 3631..3786 /gene="CG42740" /locus_tag="Dmel_CG42740" /gene_synonym="Dmel\CG42740" /note="CG42740 gene product from transcript CG42740-RA; CG42740-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_001189316.1" /db_xref="FLYBASE:FBpp0292299" /db_xref="GeneID:10178837" /db_xref="FLYBASE:FBgn0261704" /translation="MIYFKFCWLLVAVLLFISSQNVCAAPKRRGKPKIKFPKININIH HNNIKIG" ORIGIN 1 gccgtcagcc gggtgatgga cagggggaac tacgcgtacc attcggagct acagtgcccg 61 atggacgtgc cgtaactgtc tgtacacccg gaagtgcgac tacactctcc ccgtgagggc 121 ggccggaaac aggtccttcg gcaaggtcat gtctctgccg aaggctcctg gcgaatggta 181 gtcgggcgaa gagaagacaa ctctggaaga ttaccccaat ccaagacgga acagacagcg 241 tcgagggatg tgtggccgag ggggaactcg gtctctagct ggcggactct gcgcacctgt 301 ccacccgcag tttcaactcg gacttcttgc ggcacctcgg gctctgccgt gggcgacctc 361 ctttcccgtg cactcgtggg aaccaaatga atagtttaga agtaaatgag tctgatgctg 421 ctccagaagc atcacccaac cgaaatcctt cagtggattc gggtcctggc tttgtcaggc 481 tgaaaaccag gcaaaagaag ctgctgcgaa aggctcttca tggagggctg accagagaaa 541 aggctctgga ggtggtgcaa gctcttccca tagtcaaggg actcctaccc gatccttatg 601 aaaaccaaac cgccaatccg tacccctcgg gtttagttga gtgcgtgaga atcggcttag 661 ctgcggagtc tgctgggact tccctgacca gcgagcaaat gaccatgatc aaggaggcca 721 ttatcgacgt caccgtggag aaatctggca gtcagaagcc ccagttcgag ggatgtgtgg 781 ctcgaagagg atggctcctt gtgacttgtt ccaactcctc cacctcagaa tggttcaaac 841 aaaatttttg ccacatccag tcgaaagtaa ccactaagct gaagctaatg gatgagtctg 901 aactgccaag gaggaatgtc gttctcggat attttccaga tagtctaacc accagcagcc 961 agaaggtctt ggaaatcatt caggcccaga acccagtctc aacggcggaa tggagggtta 1021 tgaacaggtt gacccacggt gagctactgc atctttccat ggcagttgac aatgaatcgc 1081 acaagaaact gatcgaactg aatggaacga tatcctttcg attcgggcgt gtaaaacttt 1141 gtttgaaaaa ctccctcgat aggaaatccg tactaaatgg tagaaaagaa acgtcaccaa 1201 atagaaaatc cctggacaag gctgctgtaa gtcgggaaat tgtgcctgct ccgcaggaac 1261 cagtgatcac aaatgatagt ccgtggaacc aatcccataa tccttggctc agtcatagta 1321 atcctatgat gcagtggaat caacaacaga tgctcaggta tgatccttat agtccaaggg 1381 aacttccgcc gaactttttg catgccagct attcgggatt gggctatggg aatgaaggag 1441 acaggaggct gagaccacga acttggccag gaaactgctg atgagaaaag ggttccaata 1501 ccagaggaag atatatcaat tgacgaaaca tcaaacttaa ggaattacag cgacttgtcc 1561 ttcattttca gcaccttatc ttgaggtatt tagagttttt gataagtaga catttataca 1621 ggactcgccc aactgcaaag ataactcttt ttaacccata acaccagatc tcacaatgat 1681 tctgcttaca gcattcgaaa caatatgata cagtaacact ggttacactt aaagaacctg 1741 gcttagatga tactaaaaac acaatgatac cgtaacactg gttacactta aaggatttcg 1801 atgaccttcc ttcaagttca aacgggcttc acgaaaggga tctcaaaact cagaattctg 1861 aattccttta ttctttggca aaacatgtgg ttttgaaacc aatgcatcat atttcattag 1921 ggtttctatt gaaggaacga cattctttac aatcaatatc tctcttcaga gtttcgcata 1981 tcattacatc ttccgaaaat gtgcatttta tcagtaaaat gtgctttcag ctttcaaaag 2041 aagtcctttg cgaaccataa cttcatctcg agcgttgaag tattagcttt tccgcgcacg 2101 ctcctctcgc taattaaatc taatgcaacc tgtaataaat tcgcttgtcg cgcttttccg 2161 gtcgtgcgaa tcaacccttt ttcgcgcgtt gtgtgtatgc aaattctggc ggcaaattgc 2221 cctggcgcca ttgagcctta tcatctatgg catcctgagt cctgtagcct gagtgccgta 2281 cctgccggag tcaccctcgt agatcctcgg attccctcgc gatttggcgt acaaagtaat 2341 tttctggcag ccacgcgatt caattttcgg caaaatattc ggcataatag taaagtttta 2401 tgcgaattcc gctggcagaa catccgtttc cggctgaaaa aaaaagagaa agggtttcgg 2461 tcacattgaa ctccacccct cacttcagat tgacaatcag catgcggtct catatccgct 2521 ggatggcaaa caaaaccggg gaaaactttc acttaggcga atattgcgaa actattgggc 2581 tgcacaaccc gttgacacaa atcgcactaa atcaaaaatt atgctttgca caaataaagc 2641 gaaaggacgc cggcgaggac gaggttgcca cgcaggaaat cgctacaccc tgtggccata 2701 aatctcatct agtcaaatat tgaattacgc cggatgaaga ggcaggggat gcgaagggca 2761 gggaaagggt tctccggcga ttcgcagatc cactttagtg ggtcagaagg atgtggcaca 2821 tccctgcaga ttcgctatat tctcattccc tatatatggt gtgtgacatt tttccggcac 2881 atcgctttgt cctgtttatt taataaaaat tgaagttatg agtgctcaag ggtcgtttat 2941 gcgtcgataa tgaatagtta tggctgtttg aagggttcag attcataatg ctttgtttgg 3001 gtcgcttatg atgcaattta ttcatgttta tgtagttatt gggtgttggg gtgacaatgg 3061 gttaagggat tttccttctt tatattccga tttattgata aaaaaccaat aaaaacacgc 3121 ccgttgccaa caaaacaaca acacagacat aggtgagtga aacgtacatt ttcaaaacta 3181 catgtttaat caatttcagg tggtttcaaa aatacaaaca cctacagaaa tactgcaata 3241 ctgcgataca ttttcagttt gcctgcttac cctaaaaact ctcaataaaa catgaatata 3301 caaccaacca aacaaatgtt ttaatttctt attgttttcg ctcagctaaa ttgtatattt 3361 tcttcgacat caatacagat aaaatacgac tcaaagtaaa taatagcaac gccgattcag 3421 ctgttttggg tttttttaga gctcccgggg gttcaccttt cgattcaacg acaagctctt 3481 cttcggtaaa aaccaagctg ataagggaga ttatgatgtc attagcagtt gaatcggaaa 3541 tatttaatca agaggcatcc ccgccacagc ttcagtgtta attcaacgct cagctcagaa 3601 acaaaatcgc cggattatat tactatcaca atgatatact ttaaattctg ctggcttcta 3661 gtcgccgttc tactcttcat ttcctcgcaa aatgtctgcg cagctccaaa acgaagagga 3721 aaaccgaaaa ttaagtttcc taaaatcaac ataaatatcc atcataacaa tattaagatc 3781 ggctaaaatt tggatttgtg taattgcatc ttagcgtatt tgttgttgaa taaaattaca 3841 ttatcgtagt tatatgtttc gccattgtat ggttgcatta aaaaataacc tattaaactt 3901 acttaaaaca tatttataca taccactata cacattttgg ttgttataag aacgatttga 3961 gacctatgta gattttttgt tattctatgt taaaaataaa aacaatttac aatatgtctc 4021 gcttcc //