Dbfetch
LOCUS NM_001202253 3153 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster Rm62, transcript variant I (Rm62), mRNA. ACCESSION NM_001202253 VERSION NM_001202253.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3153) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3153) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3153) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3153) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3153) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3153) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3153) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3153) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3153) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3153) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3153) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3153) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3153) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3153) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3153) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3153) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3153) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3153) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3153) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3153) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3153) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3153) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3153) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3153) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On May 8, 2012 this sequence version replaced NM_001202253.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3153 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3153 /gene="Rm62" /locus_tag="Dmel_CG10279" /gene_synonym="4136; CG10279; Dmel\CG10279; dmP68; Dmp68; DmRH8; l(3)01086; l(3)j3D2; l(3)j3D5; l(3)rG338; l(3)s5196; Lip; p68; rm62; RM62" /map="83D1-83D2" /db_xref="FLYBASE:FBgn0003261" /db_xref="GeneID:40739" CDS 680..2416 /gene="Rm62" /locus_tag="Dmel_CG10279" /gene_synonym="4136; CG10279; Dmel\CG10279; dmP68; Dmp68; DmRH8; l(3)01086; l(3)j3D2; l(3)j3D5; l(3)rG338; l(3)s5196; Lip; p68; rm62; RM62" /EC_number="3.6.4.13" /note="CG10279 gene product from transcript CG10279-RI; CG10279-PI; Rm62-PI; lighten up; helicase p62; p68 RNA helicase; Lighten-up" /codon_start=1 /product="Rm62, isoform I" /protein_id="NP_001189182.1" /db_xref="FLYBASE:FBpp0291753" /db_xref="GeneID:40739" /db_xref="FLYBASE:FBgn0003261" /translation="MRAKAPHDRDFGHSGRGGRGGDRGGDDRRGGGGGGNRFGGGGGG GDYHGIRNGRVEKRRDDRGGGNRFGGGGGFGDRRGGGGGGSQDLPMRPVDFSNLAPFK KNFYQEHPNVANRSPYEVQRYREEQEITVRGQVPNPIQDFSEVHLPDYVMKEIRRQGY KAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALV LAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLID FLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQ LAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKI IIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAA RGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVL REANQEINPALENLARNSRYDGGGGRSRYGGGGGGGRFGGGGFKKGSLSNGRGFGGGG GGGGEGRHSRFD" ORIGIN 1 actctaattt tggacgaggt taggtaagac acgcgcggat gccgcgctgc gtaggataaa 61 tccgtcatta gcataaccgc attgaagcta agtcttcggg aaaatgctta agcttgtgca 121 atacatagcc ccccgggtgg gcggcgccac gccccgaccg actgcctgcg gctggggcaa 181 cttgctattg atttccccga gaagtggcgc gagctccgag aaatgtataa cgcaacgtcg 241 ccattttctt ttctcctccg ccagcagcag cggcactttc gcttcttctt cttcgctctg 301 caccgaacaa cgacaacagt tccacgggag tcgcaggaat cgtgagacaa tactgttccc 361 aagcacatat agtagtctcc aagctcagtc gcagcgtgcg tttcgagaca gctcgaaacc 421 agattcagac gactacgtag attccatccc gaaagcagag cagcggacga ggacgaggaa 481 atcgcttttc aacgatcccg acgaaagaac tgaggaaatc aaaattgaag gagtaatttt 541 attgcggttg tagcacagca caactcccat gtcagctgtt tagcagcgtc gaaagaaatc 601 gaaaagcgaa gacttacctt ccaagccaag tcgcagttga aatccaagtc ccaactggca 661 gacgtctaga aacggcagca tgcgagcaaa ggcaccacac gatcgcgact ttggtcacag 721 tggacgtggc ggtcgcggag gcgatcgagg cggcgatgat cggcgaggag gcggcggcgg 781 aggcaatcgc ttcggtggcg gcggtggcgg tggcgattac cacggcataa ggaatggacg 841 cgtcgagaag cgacgcgatg accgcggagg cggcaaccga tttggaggtg gtggtggatt 901 cggggatcgc cgaggaggag gtggcggcgg cagccaagac ctccccatgc gtccggtcga 961 cttctccaac ctggctccct tcaagaagaa cttttaccag gagcacccta acgtagcaaa 1021 ccgatcgccc tacgaagttc agaggtatcg cgaagagcag gagatcaccg tgcgcggaca 1081 ggtgccgaac cccatccagg acttctccga ggtccatctg cccgactacg tcatgaagga 1141 gatccgccga cagggctaca aggcccccac cgctatccaa gcgcagggct ggcctatcgc 1201 catgagtggc tcgaacttcg tcggcattgc caagacggga tccggaaaga ccctgggcta 1261 catcctgccc gctattgtcc acatcaacaa ccagcagccg ctgcagaggg gcgacggacc 1321 tatcgccctc gtgctggccc ccactcggga gctggcccaa cagatccagc aggtggccac 1381 cgaattcggt tcctcgtcgt atgttcgcaa cacctgcgtc ttcggcggcg ccccgaaggg 1441 cggccaaatg cgggatctgc agcgcggctg cgagatcgtc attgccacac ccggacgtct 1501 tattgatttc ctctccgccg gctctactaa cctgaagcgt tgcacctact tggtgctgga 1561 cgaggccgat cgcatgttag acatgggctt cgagccccag atcagaaaga tcgtctcaca 1621 gatccggccc gaccgacaga cgctcatgtg gagcgctacc tggcccaagg aggtcaagca 1681 gcttgccgag gactttttgg gcaactacat ccagatcaac attggatcgc tggagctgtc 1741 cgccaatcac aacatccgcc aggtggtgga cgtttgtgac gagttcagca aggaggagaa 1801 attgaagacc ctcctgtcag acatctacga caccagcgag agccccggca agattatcat 1861 attcgtggag acaaagcgac gcgtggacaa cctggtgcgc ttcatccgca gcttcggagt 1921 ccgttgtgga gctattcacg gtgacaagtc gcaatcagaa cgagactttg tgctccgtga 1981 gttccgctcg ggcaagtcca acattctggt ggccaccgat gtggcggccc gtggactaga 2041 cgtggacggc atcaagtatg tcatcaactt tgactacccg caaaacagcg aggactacat 2101 ccatcgcatc ggtcgcacag gacgatccaa cacaaagggc acctctttcg ccttcttcac 2161 caagaacaat gccaagcaag ccaaggcgct ggtcgacgta ctccgagaag ctaatcagga 2221 aatcaatcct gccctggaaa atctggcccg caactcgcgc tacgacggtg gcggcggacg 2281 ctcccgttat ggaggcggtg gcggcggcgg tcgcttcggc ggcggcggct tcaagaaggg 2341 cagcctgagc aacggacgag gcttcggagg aggcggcggc ggcggcggcg aaggcagaca 2401 ctcgcgcttc gactagatcg cggacaatta gatgagcagt aaaagaagct ataggaacag 2461 gagatttcag tagctaaact aaaccgcact aggtcctaag ttaaattaag ttcatagctt 2521 aagttaagat ttcgtactac tttcaccaaa ccgctgacgg ttatttttag acttaaattc 2581 agactccctg attaatgaaa cactacaaaa tgcgagctat ttgaacatag cgaatttatg 2641 tttaaatgat ttgtaagtta tttgacgctg gccgcgaggt cggtacaaca caatccaatt 2701 gagaacatca aaaacacttt acttaaacgc aaaaaccaat tttcaaatat catgtgataa 2761 tttcttaatt taacgcaacg tatcactaaa ctaaaagcaa aggaaatcgt agcgcgagga 2821 gtacgttgat gtagtggagg aaaaggagga agtaaggatc attcccgtct gtcccgtttt 2881 gatgacaatg aacaaaggct gacctgacga gcgacctttg tttgataaat aaattcttca 2941 aattactttt ggaaaattaa cttttggata ccttttatgg ctcaacacga gaacaagaat 3001 gtgtaaagca aacaaagcaa acgggaaatc acattaacta ctgacactaa atacaaaaga 3061 aaaacaaact gtatgtacaa gatgagaagt tctctttcaa tttaattttt cggaaaaaaa 3121 taaagtttgt gtatacctat tacaacctaa acc //