Dbfetch
LOCUS NM_001202020 2176 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster Stretchin-Mlck (Strn-Mlck), transcript variant J, mRNA. ACCESSION NM_001202020 VERSION NM_001202020.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2176) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2176) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2176) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2176) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2176) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2176) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2176) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2176) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2176) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2176) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2176) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2176) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2176) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2176) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2176) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2176) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2176) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2176) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2176) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2176) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2176) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2176) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2176) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 2176) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2176 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2176 /gene="Strn-Mlck" /locus_tag="Dmel_CG44162" /old_locus_tag="Dmel_CG15699" /old_locus_tag="Dmel_CG18255" /gene_synonym="143736_at; A(225); BcDNA:RH74685; BEST:GH22543; CG15699; CG18255; CG44162; CG8304; CT41348; Dmel\CG44162; Mlc-k; mlck; Mlck; MLCK; MLCK-1; MLCK-2; MLCK-3; strn-mlck; Strn-mlck; Strn-MLCK; Strn/Mlck" /note="Stretchin-Mlck" /map="52D4-52D9" /db_xref="FLYBASE:FBgn0265045" /db_xref="GeneID:36753" CDS 284..2014 /gene="Strn-Mlck" /locus_tag="Dmel_CG44162" /old_locus_tag="Dmel_CG15699" /old_locus_tag="Dmel_CG18255" /gene_synonym="143736_at; A(225); BcDNA:RH74685; BEST:GH22543; CG15699; CG18255; CG44162; CG8304; CT41348; Dmel\CG44162; Mlc-k; mlck; Mlck; MLCK; MLCK-1; MLCK-2; MLCK-3; strn-mlck; Strn-mlck; Strn-MLCK; Strn/Mlck" /EC_number="2.7.11.1" /EC_number="2.7.11.17" /EC_number="2.7.11.18" /note="CG44162 gene product from transcript CG44162-RJ; CG44162-PJ; Strn-Mlck-PJ; stretchin-mlck; stretchin-klp; myosin light chain kinase; 225kD protein; MLC-kinase; A-band-protein-225" /codon_start=1 /product="Stretchin-Mlck, isoform J" /protein_id="NP_001188949.1" /db_xref="FLYBASE:FBpp0307629" /db_xref="GeneID:36753" /db_xref="FLYBASE:FBgn0265045" /translation="MDKVHTRHGNIETLPRFVRNLRNLRCCDGDAISLECHVEADPEP FIIWEKDGHVMPSDRDYVMSFDGTKATLSIPRVYPEDEGEYTCVAKNSVGRSLSSACI IVDVPEEKENMLSRQLARPSGLLSAHSTPRSTPRSTPARSFSPLRLSYRTSSIDLSGV AERRRSDARNAITAPKFLAIPYNRVVEEGDSVRFQCAISGHPTPWATWDKDGLIVTPT PRIAVKEIDDLRIIEIDEVTFDDAGLYRVTLENDFGRIEATARLDVIRSSRYSKSPSV RSVRASSSRRNAHLYRRIMGPSTAIGGRMALASGYRGSSVPSVRFYHNDVELEASERV HILLQDSMALLIVDNVTREDEGQYTCIISGDHDPLITSTTVTFHDSNTEIRRRRAVIT ERLPEITKSLEGEVIDLCCSIECDEPYSYVWLRNGEILPDSDEFNYIDHGNGRLCLRI NDAFDIDSGIYSCQVFTSDINDSTSDSTFDSHSICSLINSGCSDCSSSGELCVLERDL RGQDEECVQLLKTPLPVVCASGDEALFYARVFPCDAEADWYLNGQLLAQADDSLNMTF QIHSLIYNTI" ORIGIN 1 agccgcacaa caagtcctta tagtccaagc acatcgcgac gtgaccttga gcaattcgac 61 ccactgatcg ccgaacattt tctttcgccc gcagccggag tactacaagg acgcgccaca 121 cttccggcga attggagacg gacccgagta caggctggag atacccagcg ccaaattgga 181 tttcaccggc acctattccg tgatagccag caattgccat ggcgaggcca aggctgtaat 241 atcgctacaa atattcgcca aagatatact caacaaaagc cgcatggata aagtgcacac 301 gagacatggc aacatcgaga cccttccccg attcgttcgc aacttgcgaa acctccgctg 361 ttgcgatggg gatgcgatat cgctggaatg tcacgttgag gccgatccgg agccgttcat 421 catctgggaa aaggatgggc atgttatgcc cagcgatcgg gactacgtga tgtctttcga 481 tggaaccaag gcaacgctga gcataccgcg cgtatatcca gaggatgagg gcgagtacac 541 gtgcgtggcc aagaactcgg tgggtcgcag tctctcttcc gcctgcatta tagtggatgt 601 gcccgaggag aaggagaata tgctcagccg ccagctagcg cgtcccagtg gcctgctctc 661 cgcccactcc acgccccgtt ctacgccgag atccacgccc gccagaagtt tctctcccct 721 gcgcctatcg taccgcacca gcagcatcga tctgtccggc gtggcggaac gcaggcgtag 781 tgatgcccgg aatgccatca cggcgccaaa gtttctcgcc attccctaca atcgcgtcgt 841 cgaggagggc gacagtgtgc gcttccagtg cgccatctcc ggacatccca caccgtgggc 901 gacatgggac aaggatggcc tgattgtgac acccacgccg cgcattgccg tcaaggaaat 961 cgatgacctt cgcatcatag agatcgatga ggtgaccttc gacgatgccg gcctgtatcg 1021 cgtcacgctg gagaacgatt tcggtcgtat tgaggccacc gctcgcttgg acgtcatccg 1081 cagctcccgc tactccaagt cgccttcggt gcgcagcgtg cgtgcctcct cctcccgccg 1141 taatgcccac ttgtacaggc gcatcatggg tccatccaca gcaattggcg gacgcatggc 1201 tctggcaagt ggctatcggg gttcgtcggt gccctcggtg agattctatc acaacgacgt 1261 ggagctcgag gcctcggaac gagttcacat cctgctgcag gactcgatgg ccctgctcat 1321 agtggacaat gtgacgcgcg aggatgaagg ccagtacacc tgcatcataa gcggcgacca 1381 cgatcccctc atcacttcca ccaccgtcac cttccacgac tcgaatacgg agattcgcag 1441 gcgtcgtgct gtcatcacgg aacgactgcc cgagattact aaatcgctgg agggcgaggt 1501 gatcgatctg tgctgctcca tcgaatgcga tgaaccctac agctacgttt ggttgcgaaa 1561 tggcgagatt ctgccagaca gcgatgagtt caattacatt gatcacggca atggacgcct 1621 ctgcctgcga atcaacgacg ccttcgacat tgactccggc atctacagct gtcaggtgtt 1681 taccagcgac atcaacgact ccacctccga ctccaccttc gactcccatt cgatctgcag 1741 cttaatcaac agcggatgca gcgattgcag cagcagcggt gagctgtgcg tcctggagcg 1801 tgatcttcgt ggccaggatg aagagtgtgt tcagctgctg aagacgccac ttccggtggt 1861 ctgcgcatcc ggcgatgaag ctctcttcta cgcccgtgtt ttcccctgcg atgcggaagc 1921 cgactggtat ctcaatggcc agcttttagc ccaagcggat gactcactta acatgacgtt 1981 tcaaatccac agcctgatat acaataccat ataatccaaa gcatattaat tttattatat 2041 tgcttaataa gcaaaaaata taaataattt agcttttcaa atcgatttta atatcatctc 2101 tatagagaac caaaacttga tcagaagatt tcaatcaaca atgtttattt tccaataaaa 2161 tttcaattaa aaaagc //