Dbfetch
LOCUS NM_001201778 2741 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant B (CG4497), mRNA. ACCESSION NM_001201778 VERSION NM_001201778.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2741) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2741) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2741) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2741) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2741) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2741) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2741) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2741) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2741) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2741) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2741) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2741) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2741) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2741) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2741) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2741) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2741) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2741) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2741) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2741) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2741) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 2741) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2741) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 2741) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 2741) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2741 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2741 /gene="CG4497" /locus_tag="Dmel_CG4497" /gene_synonym="Dmel\CG4497" /map="27E4-27E4" /db_xref="FLYBASE:FBgn0031895" /db_xref="GeneID:34001" CDS 250..1770 /gene="CG4497" /locus_tag="Dmel_CG4497" /gene_synonym="Dmel\CG4497" /note="CG4497 gene product from transcript CG4497-RB; CG4497-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_001188707.1" /db_xref="FLYBASE:FBpp0292074" /db_xref="GeneID:34001" /db_xref="FLYBASE:FBgn0031895" /translation="MESETKASAEEKQQENPSTVPMDTLDPPPPCGSSKTLKRCLSVP IIRTPPAGKSGKTPMTTRAAAAAALAAKEHEQTPKKSQQVVDIQMPNAPSIDCFGKNI HIRSQPNSREVSPAPVFNIFTPRARRYSASYSPLTTAANGATLCLTPRVSQLRQEECA DLNSREVNHEREVHREIQISQSWEDLTLVAENWSCKSDEFSNPLQVSLPPTGTTSCSS PSPTNNRAGMRLPYSPSPTRRTFATRRSMSPIAMRPSQLGPVKRKFELDDNPTQGSNW SVYSPPPVKKIFTESRGSSPVCQSPSSVCPSPDSGTFDGRLTPKLFISKLCTSNSVSG NGINNNSSSSGCPSPVSASPGGVGSGPNLEAAMCLVSGGSQSQSIDEGISIPESETHS CRSRTSSIVSTASSSTQVLVNDLVDDATLMDDAKSETSSIGGCSTISIESSSCDSGAK TAATFLNRLVVDSDGGGSPLAQKSFYINKQGLSGAKKFVVNHERTGAVSKDVPQKL" ORIGIN 1 aaatcaagtg atctctatca ttggcattat actactaaat tgtctttgaa taatacgttt 61 tatgtgaatg gttaagtaat cgttgaactc gtcaaatttt aaataatttc aaattttcag 121 ccaatgctcg agtgtcatac tgccgaatcg tgtatgcggt cactcgcatt ttttcgcttg 181 tcaacactat aaaaaaacta aactggtagc tgaaaattac aatcacagga cataatttta 241 taaacgccaa tggaatcgga gacgaaagcg agcgccgagg agaagcagca ggagaacccc 301 tcgacagtgc ccatggacac gctggatccg ccgccaccgt gtggcagctc caagaccctc 361 aaacgctgcc tcagtgtgcc aataatccgg actccgccgg cgggcaaatc gggaaagacg 421 ccgatgacca cacgcgcagc cgcagcggct gctctggcgg ccaaggagca cgagcagacg 481 cccaagaaga gccaacaggt ggtggatatc caaatgccga atgccccatc catcgattgc 541 ttcggcaaga acatacacat acgatcgcag cccaattcca gggaggtttc accggctccc 601 gtcttcaata tattcacacc tcgagccaga aggtattcgg ccagctatag tccactgacc 661 acggcagcca atggagccac tctctgtctc acgcctcgag tttcgcagct gcggcaggag 721 gaatgcgcag atctaaacag ccgggaggtt aaccatgagc gggaagttca tcgggaaata 781 caaatttcgc agagctggga ggatctcacg ctggtggccg agaactggtc gtgcaaatcg 841 gacgagttct ccaatcccct gcaggtcagc ctgccaccca ccggcaccac cagctgctcc 901 agtcccagtc ccacaaacaa tcgcgcgggc atgagattac catactcccc gtcgccgacg 961 agacgtactt tcgccaccag gcggtcgatg tctcccatag ccatgaggcc atcccagctg 1021 ggacccgtga agagaaaatt tgagctggac gataacccca ctcagggcag caactggagc 1081 gtgtactcac ctccgcctgt gaagaagata ttcacggaaa gtcgcggctc ctcaccggtg 1141 tgccaatcgc cctcgtcggt gtgtcccagt cccgattccg gaacctttga cggccgcctc 1201 acgcccaagt tgttcatctc gaagctgtgc acaagcaatt cggtgagcgg aaatgggata 1261 aataacaata gcagcagctc gggatgtccg tcgcctgttt ccgcctcgcc cggaggtgtt 1321 ggcagcggtc ccaatctgga ggcagccatg tgcctcgttt ccggcggcag tcagagccaa 1381 agcatcgacg agggtatctc gatacccgaa tcggagacgc actcctgccg cagtcgcacc 1441 tcttccatag tgtccaccgc atcgtccagt acgcaggtgc tggtcaacga cctggtggat 1501 gatgccactc tgatggacga tgccaaaagt gagacctcat cgatcggtgg atgctccacc 1561 attagcatag agtcatcctc ctgcgatagt ggtgccaaga cggctgccac tttcctgaat 1621 cgcctggtgg ttgattccga tggcggtggt tcgccgctgg cccaaaagag cttctacatt 1681 aacaagcagg gattgtcggg cgccaagaag tttgtggtca atcacgagcg aacgggagcc 1741 gtcagcaaag atgtgccgca aaagctttaa gaacatacac agattaactt agtttagggg 1801 tcgattttag gaaattctaa gaaatgctta taatctcagg agccaaaagt taatcattgc 1861 tgcactttag ctgatttgtt ttgaatgctt tagaaaatat tttcgaataa aattgcatag 1921 cttgatcatt tttaagttct aaaactcaac caaaggtttt gttataaaaa ccacaagcaa 1981 tattttttta gaaagaaaat tgaattaaga atacctttgg tgtaatatgt aaaggattaa 2041 aaatggttta aaatgtatat ttcccgtagt gttcaaaaca aatcttcgtg gaagagacaa 2101 aagataaatt agtggtactt tgatttttgt ttaagaaaat cgacccgaaa taaccaatta 2161 cacacacacg cttaagttga gagtttcaaa agatcctccg acttgcttaa ctttagatcg 2221 tagctttgtt gtacatagtt aagttgtttg tctgaagttc taaaccatct tgcatatcat 2281 ttaacgctgc gcacttccct tcacccctag aatcaatcgg ttttaatatg ttagcctaag 2341 gttcactata ctatatatag ccagagttta ttgcctcgat ctttgtgtta tagaatgttt 2401 tcccatttcc aatgtttcgg ttaataatcg acgtacatta gttttgtttt tagtcgccac 2461 ctcacccctt agatattagg aagaaaaccc caattttgcc aaatatgttt attctatgct 2521 tatgtgtaat aatatatcca gcattatatt gcctataatg tgatccaatt tagcgcggat 2581 atctgcgcgt atcccacaaa aaccttactg atatagtaac gcatatatta tatagattta 2641 cgatccgatt ctaattatcg taagcgaatt tacatagttt caagaaaaaa agttatactt 2701 aaaaaggatc caaaaagaaa tacacatttt ttcaattgat c //