Dbfetch
LOCUS NM_001198520 1774 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana BRCT domain-containing DNA repair protein (ATXRCC1), mRNA. ACCESSION NM_001198520 VERSION NM_001198520.1 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1774) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 1774) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1774) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1774) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 1774) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). FEATURES Location/Qualifiers source 1..1774 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..1774 /gene="ATXRCC1" /locus_tag="AT1G80420" /gene_synonym="homolog of X-ray repair cross complementing 1; T21F11.25; T21F11_25; XRCC1" /note="Encodes a component of plant break excision repair and functions at several stages during active DNA demethylation in Arabidopsis." /db_xref="Araport:AT1G80420" /db_xref="GeneID:844382" /db_xref="TAIR:AT1G80420" CDS 469..1494 /gene="ATXRCC1" /locus_tag="AT1G80420" /gene_synonym="homolog of X-ray repair cross complementing 1; T21F11.25; T21F11_25; XRCC1" /note="ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357)." /codon_start=1 /product="BRCT domain-containing DNA repair protein" /protein_id="NP_001185449.1" /db_xref="Araport:AT1G80420" /db_xref="GeneID:844382" /db_xref="TAIR:AT1G80420" /translation="MSQKRNLPSWMSSRDPEITPSKSHCKKPKDEGPTEEHNSRNAPS NKSEHAEPSSNTTEFSKLMEGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTL LICAFPNTPKFRQVETNGGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSSPQD ANREKSFSYCTASLRCLVDSNRSACNLVKEPFFVTEVKKWARDDLSQTISWLESQEEK PEPGEIKRIAAEGVLTCLQDAIDSLEQKQDIGSVTELWSFVPRVVKELGKMESSSKKE NSTASKEEVCKQAKSWKKIYEAELAKPGEDESTSRVACGYDSDMTVEMTEEEIELAYR NVSLECL" ORIGIN 1 aatcatttgt taaattgaaa acccgtcatt ttgatctgat tttgtactgt atgttgacaa 61 attgaatagt ctctgatgat ttcgatcaaa gagaagccac ggggggagcg ctagcactta 121 aaggttcctc gctttcttct caagtttata gtcttctcct ctgtgttggc tcatttacat 181 gggtagattt agttttcgag ggttttatgg cgaagttcgc gatgttctgt taattgcaat 241 gtctttcttc tttttttttt tttttttttt tttgatttgt ctttcttagg gaatgtttta 301 cattttttgc agatttgcac cgttttctct ctggctttgt gttgtgctag atgcgatgca 361 atagcaatat tttcctggag tttcaagtaa ctagtggctt aggttcataa tagtgtttct 421 ttgtaggacg aaagctgtgt tagtattctc tccactgtaa aggacaagat gtctcagaag 481 cgaaatcttc cttcttggat gagttctagg gatcccgaga ttactccgag taagtctcat 541 tgtaagaagc ctaaggatga aggaccaacc gaagagcaca acagtagaaa tgccccttcc 601 aacaagtcag aacacgccga gccaagttca aataccactg aattctctaa acttatggaa 661 ggcgttgttt ttgtactttc gggctttgtt aatcctgaga ggagtacact gaggtcacaa 721 gccttgacaa tgggagccac ctatcaacct gactggaacg ctggctctac cttgttgatt 781 tgtgcttttc ctaacactcc aaagttccgt caagttgaaa caaatggtgg aacaattatc 841 tcaaaggagt ggataactga gtgttatgcg cagaagaagt tggtagatat cgagcaatac 901 cttatgcatg ctggaaaacc atggaggaaa agcagtagtc cccaagatgc taatcgagag 961 aaaagctttt cttattgcac tgcttcactc cgatgtttag ttgactctaa tagatcagct 1021 tgcaatcttg tgaaagagcc attttttgtt acagaggtga agaaatgggc cagggatgac 1081 ctaagtcaaa ccatctcatg gcttgagagt caggaggaaa aaccagaacc aggcgaaatc 1141 aagcgaatag ctgcggaagg agtcttaacc tgcttacaag acgccataga ttctcttgaa 1201 cagaagcagg acattggatc agttacagag ctatggagct ttgtccctcg tgtagtgaag 1261 gagcttggaa agatggaatc gtcttctaaa aaggaaaatt caacagcatc aaaggaagaa 1321 gtttgcaaac aagcaaagtc gtggaaaaag atctacgaag ctgagctagc aaaaccgggc 1381 gaagatgaat cgacctctcg ggttgcttgt ggctatgaca gtgatatgac cgttgagatg 1441 actgaagaag agatcgaact tgcttatagg aacgtttctt tagagtgtct ttagatcaaa 1501 cttgtttcat tttgcatatg atctcttaag gaattccaag aattcttgtt atactcggtt 1561 tgttcggttt gagtaggatg ttattactga taaaaatttg aaataatccg gtctgcttgg 1621 ttcggaaaga atgtttctaa ttagaattta tttatgctgg tttggattcg attgagagat 1681 gtaatcggtt gcaattaata agtcggtttg atttgatact ttttagtgtc gattgacgat 1741 gaatttgatc ggttaataca aatttgattt ggtc //