Dbfetch
LOCUS NM_001170302 3578 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster axin, transcript variant E (Axn), mRNA. ACCESSION NM_001170302 VERSION NM_001170302.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3578) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3578) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3578) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3578) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3578) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3578) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3578) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3578) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3578) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3578) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3578) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3578) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3578) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3578) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3578) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3578) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3578) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3578) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3578) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3578) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3578) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3578) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3578) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3578) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3578 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3578 /gene="Axn" /locus_tag="Dmel_CG7926" /gene_synonym="0442/30; APC; axin; axn; CG7926; d-axin; D-Axin; dAxin; dAXIN; Daxin; DAxin; din; Dmel\CG7926; GS; GSK3beta; l(3)S044230" /note="Axin" /map="99D2-99D3" /db_xref="FLYBASE:FBgn0026597" /db_xref="GeneID:43565" CDS 404..736 /gene="Axn" /locus_tag="Dmel_CG7926" /gene_synonym="0442/30; APC; axin; axn; CG7926; d-axin; D-Axin; dAxin; dAXIN; Daxin; DAxin; din; Dmel\CG7926; GS; GSK3beta; l(3)S044230" /note="CG7926 gene product from transcript CG7926-RE; CG7926-PE; Axn-PE; axn; dAxin; axin; Dm axin; D-axin; glycogen synthase kinase 3beta" /codon_start=1 /product="axin, isoform E" /protein_id="NP_001163773.1" /db_xref="FLYBASE:FBpp0289827" /db_xref="GeneID:43565" /db_xref="FLYBASE:FBgn0026597" /translation="MSGHPSGIRKHDDNECSGPRPPVPGEESRVKKMTEGVADTSKNS SPSYLNWARTLNHLLEDRDGVELFKKYVEEEAPAYNDHLNFYFACEGLKQQTDPEKIK QIIGAIYR" ORIGIN 1 cgctgtcaac gctggaggag gattcggatt cataatcgca gctcgggacg cgggcactcg 61 ttcagtttga ctttccgctt gtcaaggcat tgtcaccgaa tccctgtgct ccgtggctcg 121 tggcgagatt tgtcaacaat tagtggcgat agtaatccga aaagtcgcgc ggatccgaag 181 tgagcaacct gtcgcggcat tgtggatgca tcaaaggcct tgtctaattg ccttccaaat 241 tcgcaaacga gcgcatcttc catgtcccag ctatttgtaa aatacgggcg tttgtgattt 301 gaaaccgaga acacgttcgt tgatcgtaac tggtaactta agcgtaatat taggtaaata 361 tttagcagcg atcgcttgtc gtgggaagcc aatttagagt ggcatgagtg gccatccatc 421 gggaatccgg aaacatgatg ataatgagtg tagtggccca cgaccaccag tacccggaga 481 agagagccgt gttaaaaaga tgaccgaagg ggtagcagat acctcgaaga attcgtcgcc 541 atcctacctg aactgggccc ggacgctgaa ccacctgctg gaggaccgcg atggggtcga 601 gctctttaag aagtacgtgg aggaggaggc gcccgcctac aacgaccacc tcaacttcta 661 cttcgcctgc gagggcctca agcagcagac ggatccggag aaaatcaagc agataatcgg 721 agccatctac aggtgagtgg aatgcttaga agaatgccaa atgctcaatg gtgaagcact 781 taccttgccg cccttcccca cttgctaaag attcttgcgc aagagtcagc tgtccatctc 841 cgatgacctg cgcgcccaga tcaaggccat caagacgaat cccgagatcc cgctcagccc 901 acacatattc gatcccatgc agcgccatgt ggaggtcacc atccgcgaca acatctaccc 961 cacgtttctc tgctccgaga tgtacatcct ctacatccag cagatgtccg cccagcagga 1021 gcgctgcacc agcagcggcg ccacgggatc gggaagtgcc gggagtagtg gcagcggcgg 1081 cagcagccta gcgggtgcct gtgccctgcc accgaccacc gcgtccggca agcagcagct 1141 cccgcagctg gtgccgcccg gtgccttcat caacctgccg gtgagcagcg tgagcgggcc 1201 gccagctggc acgtgcagtg ccagcggcag tgtgtacggt ccctcgactt cggccagctc 1261 cagcggctca ataagcgcca ccgacacact gccccgcagc tccacgctgc ccacgctgca 1321 cgaggactcg gtgctgtcgc tctgcgacga cttcgagaag gtgcagatgc aggagggcgg 1381 cggatccctc ggctctggat ctgtgggcgc gggtgcgcga gcgcccgact acccgattcg 1441 cctcacgcgg gacctactaa tagcaactca gaaaagaaga ctggaaatcc gacctcctgg 1501 ggacggtcgc ccgtacatcc aacgcagaca cagctccacg gagagcaagg cgatccgcca 1561 gagcgcgatg gcaaacaagg agaccaacac ctttcaggtg atacctcgca cacaacgact 1621 acattcgaac gagcacagac cactgaagga agaggagctg gtgtccttgc tgatacccaa 1681 gttggaggaa gtgaagcgaa agcgagacct ggaggaaaga gctcgcgaga gaaatcccgg 1741 tgctgctctg cttaccaacg aaagatccag tgccagcgat cgagccttcg ccgaggcgat 1801 acgagagaag tttgcactgg acgaagacaa cgaccaagac attctggacc agcatgtgtc 1861 gcgggtgtgg aaggaccaaa cgccgcaccg ctcgccggga acgatgtcgc cctgcccacc 1921 cataccgtcg cgccgacgta cagccaccca cgattccgga atggtcagcg atggcgccat 1981 gagtctaagc ggacactcaa tgaagcactc aaagtccatg ccggatcaca gttcctgctc 2041 gaggaagttg acaaacaaat ggccttccat gaacacagac agtggcatta gcatgttctc 2101 ggccgacact gttaccaagt acaaagatgc gagttctcga tctggctcta gcacggcctc 2161 gaaactggag gaggcgaaac gaagactgga agacgagccg cggcgctctc gtcgatacgc 2221 ccaaccgccg atgcagcacc tgtcgcaaca gccactggcc tccttcagca gcagcagcag 2281 tggcggcagc atcagcctgc cacaccagcc accgcctctg ccggccaagc cgccggagac 2341 gatcgtggtg ttctcgttct gcgaggagcc agtgccgtac aggataaaaa tacccggtac 2401 tcagccaacc ctgcgtcagt ttaaggacta tctgcccaga agaggtcact ttaggttctt 2461 cttcaagacg cactgcgagg acccggacag tccagtgatt caggaagaga ttgttaacga 2521 ctccgacata ctgccgctat tcggagacaa agcgatgggt cttgtcaagc catccgatta 2581 atattaagca tttagcgtag attttgtatt aaggcaaatc gtgagtgtgg cttggtgcac 2641 tgatgcactc ggcaagatac gaatacgata acgaacgcac caagtgtacg catcttagag 2701 ctagcaactg gagaagctat ttccgacaaa tcaaaagcta tatatgtacg ggcgaccggc 2761 ttttgtaagc atcacaaact actctctgcg ggggcaatgt atttttctgt acaacaaaaa 2821 ctgatctatt caccagccac ccaaacaaag gtggtggttg gttctacgtt tgtaaatcca 2881 taacgagaat attcggagct attggtagga gagaacgatc ctctttatgt tcacaccttg 2941 gcggccgtac gttcagagtc cgaaaagcgt ttcagtcccg cagccaggga ctgagatctt 3001 taggaactac tgcacaaaat cacattatta ggaagattta tgggtttacc tcgattggga 3061 tttgtttgtt accttttact aactacggac tgcctgcaat aaattttgtt aatatttttg 3121 taatgtgcat tttatgatga tgatatgatg atattaacaa agttctattc aactcgacaa 3181 aaaatcaaaa gataatctgt tttatttttg tatatctata gcacagcata cacacttaac 3241 tttatgtatt tatacaatgt attgtaattg cgtcaattgc atctaccgat ctaccattag 3301 gcacatttca tttggggctc gatcagtcca gcagcgacca atactggaat acaatgggtg 3361 ggtggtttat tggcccttgg ccggaacgga cgaggtcgat cgattgattt attcaaataa 3421 gttaatgcat acacacacac ttactataca tattttttta agaaaactga aataaccgca 3481 gaaatatgca agtaacggat aaatttatta tatcaaacat attttatttg tgagcaaaat 3541 gcatatagat ttaataaaaa agtacatgga tagaacgt //