Dbfetch
LOCUS NM_001169746 3135 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster reduction in Cnn dots 6, transcript variant B (Rcd6), mRNA. ACCESSION NM_001169746 VERSION NM_001169746.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3135) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3135) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3135) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3135) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3135) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3135) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3135) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3135) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3135) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3135) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3135) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3135) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3135) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3135) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3135) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3135) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3135) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3135) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3135) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3135) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3135) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3135) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3135) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3135) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jul 15, 2014 this sequence version replaced NM_001169746.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3135 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3135 /gene="Rcd6" /locus_tag="Dmel_CG11175" /gene_synonym="CG11175; Dmel\CG11175" /note="Reduction in Cnn dots 6" /map="57A8-57A8" /db_xref="FLYBASE:FBgn0034530" /db_xref="GeneID:37332" CDS 984..2525 /gene="Rcd6" /locus_tag="Dmel_CG11175" /gene_synonym="CG11175; Dmel\CG11175" /note="CG11175 gene product from transcript CG11175-RB; CG11175-PB; Rcd6-PB; reduction in Cnn dots 6" /codon_start=1 /product="reduction in Cnn dots 6, isoform B" /protein_id="NP_001163217.1" /db_xref="FLYBASE:FBpp0289922" /db_xref="GeneID:37332" /db_xref="FLYBASE:FBgn0034530" /translation="MNYQKASEKQSSSSLKKRPPGNGNSIQNFWNDRIMERFIKANLF IICCVVAVLLLIVYLGAFSCEVSWILEAHGELPFAAYTLCSLYFVMFVATTILIHGLV SGLCWPLFAWSGIIGLLSIPELVFVMIMTTQHWGLQSVHGLTELTSYLIRLIINCFAL ICVIPTGIRWRRETQVLSQLQGLATRLSLQTPAPSVPITKADSRRSSQRLSGFENAGY QLCDETASKLPLGPGMGLGMNNQCGGSQAFGSQNEFNASMFAPALAQQFNNATLMQRG GTGGAGGGHRAQSLMDLRCTLPGMYNPRHVLDTEDKNAKYFNITIDDLKNNLHDSHRP SPPSLIGSTSNDPIYCSIEPKQLTPPPAQQRSHHRPRGTHKQPPPGKLSRNCVSLENL DGISKVQNDLTAYGNNLLQNYTQQQQYYLAMLLHQQQQQQLHHQQAGGIYRRPSNCSS TGGFAGTVLAQPMQRRGSTHSQQMQYYGGFGYANYTNPYITANSKLSLGNESDDYRKY RDVAL" ORIGIN 1 cttcagttgc caaacagccg ccgtagccga cgcagtggtc gcagagtcgt tcggcgaacc 61 aagttcgttt cctcagtctt tcgaatttca cttttaaccg tttgcaagcg cgccaagttg 121 aagcgtacgc gtaccgttag cgcggcacgt tacgaagtga gtgatccaca cacatatatc 181 gaccattctc acgtccgtca actctgactc tgacttgacc tggtgctggt ggccaaaccg 241 ttgtacaatt aaataacaat caaattataa ttgcatgcaa gcacatttcg cttttgcgat 301 gagacaaaaa acacgcaggc aaacgagttc tccgctcttt atttaatttg tgcgcgcagt 361 aaaagtgcca agaaccacta ggtgctgctg gtggtggtgg cgctgatttt tgttgtgtgt 421 ggctttacgt gccccattaa agtcgtcgtc ggtcgggcga cgcaatttgc atgagcgaca 481 gcttcgaatc ttttcaacaa tttgtactac gctgagtgac tcaacgctaa acaatttggt 541 ggaacgcgtg tgtgagtgcg tcgctgagaa aacatttctt gcttgactga taatttctac 601 gagccgcgct tattgttcat ttagtttttg gtatttctcg tgcctgttgt aactgcttgg 661 gatggatggc tggctggatg gatcgcttgc aataacaatc ataatgcgaa gtgaaagcac 721 caacctagca tgacaccgct caattgggcc gctacttaac gctttcattc aacccagaag 781 aggtctggac tcgaaaccca ttcgaacata aaccaagaac tagaacacat cgcatcgcat 841 cgtatcgcat cgcaccactg gcctcctcct ttgaaaaagg ggaaccaagg ccaccctccc 901 gctagccagc ataatttctc ttgaaaaacc gcattcacac atttgcttca caccacaacc 961 gcaacaaccg aataacacga ataatgaatt atcagaaggc cagtgaaaag cagtcgtcgt 1021 cctcattgaa gaagcggccg ccgggcaacg gcaatagcat acaaaacttt tggaacgatc 1081 gcattatgga gcgcttcata aaggcgaatc tattcattat ctgctgcgtg gtggcggttc 1141 tattgctgat cgtctatctg ggtgccttct cgtgtgaggt ctcgtggata ctggaggccc 1201 acggcgagct gcccttcgcc gcctacacgc tctgctcgct ctactttgtc atgttcgtgg 1261 ccaccacgat ccttatccac ggcctggtca gcggactctg ctggccgttg ttcgcctggt 1321 cgggcatcat cggtctcctc tcaattccag agctggtctt tgtcatgatc atgaccacac 1381 agcactgggg tctgcaatct gtgcatggat taacggagct cacctcctac ctgattcgcc 1441 tcatcatcaa ctgcttcgcg ctgatctgtg tgattcccac gggcatcagg tggcgacggg 1501 agactcaggt gttgagtcag ctgcaaggat tggccaccag actttccctg cagactccag 1561 cgcccagtgt gcccattaca aaggcagatt cccggcgatc cagccagcgg ctaagtggat 1621 tcgagaatgc cggctaccag ctgtgcgatg aaacagcttc caagttgcca ctagggccag 1681 gaatgggact gggcatgaac aaccagtgtg gaggcagtca agcatttggc tcgcagaacg 1741 aattcaacgc cagcatgttt gcacccgcat tggcacagca gttcaacaat gccacgttga 1801 tgcagcgcgg cggaacaggc ggagcaggtg gtggtcatcg cgcccagtcg ctgatggatc 1861 tgcgctgcac tctgcccggc atgtacaatc cacgacatgt gctcgatacg gaggataaaa 1921 acgccaagta cttcaacatc accatcgacg atttgaagaa caatctccac gactcgcacc 1981 gaccatcgcc gccttcgctg atcggttcca ccagcaacga tcccatctac tgctccattg 2041 agcccaagca gttgacaccg ccaccggcac agcagaggag ccaccatcgt ccacgcggca 2101 cacacaagca gccaccaccg ggtaaactgt cccggaattg cgtatccctg gagaaccttg 2161 acgggatcag caaggtgcag aatgatctga ccgcctacgg gaacaatcta ctccagaact 2221 acacgcagca gcagcagtat tacctggcca tgctgcttca ccagcagcag cagcaacagc 2281 tgcaccacca gcaggctggc ggcatttacc gcaggccatc caattgcagc tccactggcg 2341 gattcgccgg caccgtgctg gcccagccga tgcagcgacg cggctccacg cacagccagc 2401 agatgcagta ttacgggggc tttggctatg ccaactacac caatccgtac atcacggcca 2461 acagcaagtt gtcgctgggc aacgagtccg acgattaccg gaagtaccgc gatgtggctc 2521 tttgagtccg tttttttggt tctggaaacc ggatcccaat cgatcatcag tcagcgttta 2581 ggttaagctc actagttgta ggatatgctc gatctagaat gagattcctc ggaataacga 2641 ccaaagagcc acaaactaac tcagtttcag ttcgtagact aacgttacac tgcgagaatc 2701 gtatagcgcg tttatgcgcc agtcaatttg tagcttaaat gggtctgcat tcagttttat 2761 ttgctttact gaataacacg acctatttgc aaataaaagt gtactaaata tgagactcca 2821 tggggatata attttatatg caaataaaag taatcgtaat agtaaatatc acgaaatatc 2881 agacgtactc aaaaatataa atagatattt ctaaaacaaa caaatatcaa aaagcatacc 2941 cccccaataa gagaggcact gtatgaaaat tgcccaagtc tagttctaag aatcgaacac 3001 aaatgaacat tgacattcat tgtttattat agttaatagg aatacgaata acaatactct 3061 gatcgacagt ctaaccatcc acagatcaaa aagtgtacat acttgtaata aaaggcgtaa 3121 ctgttttctc acttg //