Dbfetch
LOCUS NM_001169643 2953 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster peroxin 6, transcript variant C (Pex6), mRNA. ACCESSION NM_001169643 VERSION NM_001169643.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2953) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2953) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2953) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2953) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2953) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2953) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2953) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2953) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2953) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2953) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2953) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2953) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2953) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2953) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2953) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2953) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2953) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2953) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2953) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2953) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2953) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2953) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2953) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 2953) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jul 15, 2014 this sequence version replaced NM_001169643.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2953 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2953 /gene="Pex6" /locus_tag="Dmel_CG11919" /gene_synonym="CG11919; CG30019; DmCG11919; DmelPex6; Dmel\CG11919; PEX6" /note="Peroxin 6" /map="47C5-47C5" /db_xref="FLYBASE:FBgn0033564" /db_xref="GeneID:3772165" CDS 173..2866 /gene="Pex6" /locus_tag="Dmel_CG11919" /gene_synonym="CG11919; CG30019; DmCG11919; DmelPex6; Dmel\CG11919; PEX6" /note="CG11919 gene product from transcript CG11919-RC; CG11919-PC; Pex6-PC" /codon_start=1 /product="peroxin 6, isoform C" /protein_id="NP_001163114.1" /db_xref="FLYBASE:FBpp0308554" /db_xref="GeneID:3772165" /db_xref="FLYBASE:FBgn0033564" /translation="MNENDDAKKVVGKRNSVSFDQQDPGQPRFSFSGRVQELVEGYNS AIQLLAPKWPWFLYPGYLTYAVYWRYAKYYKGKFLLTPIPNRLYDLLIKNEQIKSEHL VFASQEVYENYAESPDVNFVNLVIRGRRVRIGKPLASDEGNMTQTVIKQMLQEAPHTI VAQILPAAQCQPNCLYVQENFYGNILDRFQIRSNCWVQVEHFADEQTIPGIATKAHVY LVADPHELPAELTEVILSNYFNTPRLMHRGHTYRIEVNAELVGTATYAHYYLIFAHLR HVHLKCIHLETKGSEFELQAIVAKNFSNLVQVPASHSFLPRQVLDSMAIVENYPSGLR KPYKLLRSSVDAFLPKKSACLSSKHIFPVFLLQGERGSGKSKLVSAVAQELGMHIYGA DCAEIVSQVPSHTEMKLKAVFAKSQVCEPLMICFHNFEIFGIDNEGNEDLRLLSAFHV QVQELFNRDRKHPIVVVALTSDRHLKPMIQGLFLEIINIDMPSKEERFEILRWMHVRE TFNDIIYNQKAIEQLPLFSRENQSQFMPRISPSWRETLNVLQDVAAKSQGFLLGDLQL LYDNAVRMKIRNRLGRTTLDMSHFAKNLTDMQSSFADSLGAPKVPKVYWSDIGGLAKL KDEIQSSIGLPLKHVHLMGKNLRRSGILLYGPPGTGKTLVAKAVATECNLSFLSVQGP ELLNMYVGQSEQNVREVFSRARSAAPCVLFLDELDSLAPNRGVAGDSGGVMDRVVSQL LAEMDGMSDGDTSKPIFILAATNRPDLIDPALLRPGRFDKLFYVGPCSTAEDKAAVLR AQTQRFALDAGVDMEQIAERLKSEMSGADLYSICSNAWLSAVRRTIDGHLSGTISEKE LVPENVIVQEEDFTKSFNKFVPSISAKDLEYFNNLKASYSV" ORIGIN 1 agcaaatatc ttaccagaat caaaacattc gtaatgaaga ggagagtaat tgtgaaaaag 61 tgtatttgtc tggcgcctat cccccaactc cttgaacttt gacaccgcct cctcgaaatt 121 aacccttgta ctcgtgcttt ctgttgtgtt tagtccatat ttattgtaaa aaatgaatga 181 aaatgatgat gcgaaaaaag tcgtcggcaa gcggaattcg gtgtcgttcg atcaacaaga 241 tccaggacag ccgagattta gcttctctgg gagagtacag gagctagtcg agggctacaa 301 ttcggccata cagctgctgg cgcccaagtg gccctggttc ctctaccccg gatatctgac 361 atacgccgta tactggcgtt acgccaaata ttacaagggc aagtttctgc tgacccccat 421 tccgaaccgc ctctacgatc tgctgatcaa gaacgagcag attaagtcgg agcacctggt 481 gttcgccagt caggaggtgt acgaaaacta tgcggaatcg ccggacgtca actttgtcaa 541 cttggttatc cgcggcagga gggtaagaat cggtaagccg ctagcttcag acgaaggaaa 601 tatgacccaa acggttatca agcaaatgct ccaggaggcg ccgcatacga ttgtggccca 661 gatcttgccg gctgcacagt gccaacccaa ttgtctgtac gttcaggaga acttctacgg 721 caacatattg gatcgctttc aaatccgctc caactgctgg gtgcaggtag agcattttgc 781 cgatgagcag acaatacctg gaatagcaac caaagcacat gtgtacttag tcgcagatcc 841 ccatgaactt cccgccgaac tgacagaggt catcctgagc aactatttca atacacctcg 901 actcatgcat cgtggacata cctaccgcat cgaggtgaac gcagagttgg tgggcactgc 961 gacttatgcc cactattacc tgatattcgc tcacctacgc cacgtccacc taaagtgtat 1021 tcacctggag acaaagggca gcgagttcga gctgcaagcg attgttgcca aaaactttag 1081 caaccttgtt caagtgcctg catctcacag tttcctgcct cgtcaagtgc ttgacagcat 1141 ggccatcgtt gagaactatc caagtggact tcgaaagccc tataagctgt tgcgctcctc 1201 agtagatgct ttcctgccaa aaaagtccgc ctgcctgtcg tcaaagcaca tatttcctgt 1261 gttcctcctg caaggcgagc gaggatcggg caaatcaaag cttgtgagcg ccgtagccca 1321 agagttgggg atgcatattt acggagcaga ttgcgcagag atcgtttcgc aagttccctc 1381 ccacacggag atgaagctaa aagccgtatt tgccaagagc caagtttgtg aaccgcttat 1441 gatttgcttc cataacttcg agatttttgg catagacaac gagggtaacg aggatctgcg 1501 tctgctttcc gccttccacg tgcaggtcca ggaactcttc aacagggacc gcaagcatcc 1561 gattgtagtg gtggctttga ccagtgacag acaccttaaa cccatgatcc aaggactttt 1621 cttggagatc ataaacattg acatgcccag caaggaggag cgattcgaga ttcttcgctg 1681 gatgcacgtg cgcgagactt tcaacgatat tatctacaat cagaaggcta ttgagcaatt 1741 acccttgttc tcgcgggaaa atcagtcgca attcatgcca cgcatttctc ccagctggag 1801 ggaaaccctc aatgtccttc aggatgtggc tgcaaagtca cagggctttc tgctcggcga 1861 ccttcagttg ctgtacgaca acgcggttcg catgaagatt cgcaataggt tgggtaggac 1921 caccctggat atgtctcact tcgccaagaa cctcactgac atgcagagct ctttcgcgga 1981 cagtttgggt gcgcccaagg tgccgaaggt ttattggtcg gacattggtg gtctagccaa 2041 gctaaaagat gagatccaga gcagcattgg tctgccgctt aagcatgttc acctcatggg 2101 caagaatcta agaagatcgg gaatcctgct ctacggtccc ccaggaacag gcaaaaccct 2161 ggtggccaag gctgtcgcca ctgagtgcaa cctgagtttt ctttccgttc aaggtccaga 2221 gctactaaac atgtatgtcg gccagagcga gcagaatgtt cgcgaggtct tctccagggc 2281 tcgttctgcg gctccttgtg tactcttctt ggacgaactg gattccctgg ctcccaatcg 2341 aggtgtggct ggggactctg gcggtgtaat ggatagggtg gtgtcgcagc tattggcaga 2401 aatggatgga atgagcgatg gcgacactag caagcccata ttcattctgg ccgccaccaa 2461 tcgcccggat cttattgacc ccgctctttt gcgtcctggt cgctttgaca agcttttcta 2521 cgtgggacct tgttcaactg ccgaagacaa ggcagccgtt ttgcgtgccc aaacccagcg 2581 attcgctttg gacgccggtg tggacatgga acagattgcc gagcgtttga agagcgaaat 2641 gagcggcgca gatctgtact ccatctgctc gaatgcatgg ctctccgctg tgaggcgcac 2701 catagacgga cacttgagtg gaacaatatc agagaaggaa ctggtgccgg agaacgtaat 2761 tgtgcaggag gaagatttca cgaagtcttt caacaagttt gtgccctcga tcagcgccaa 2821 ggatctggag tatttcaaca acctaaaggc ttcatatagt gtctagagta tgcgcagatg 2881 gttaactagt tctaagagtt agttttttac agacattttt cgttgttttt caataaaccc 2941 gttgatagtt cac //