Dbfetch
LOCUS NM_001144634 2679 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant C (CG5746), mRNA. ACCESSION NM_001144634 VERSION NM_001144634.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2679) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2679) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2679) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2679) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2679) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2679) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2679) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2679) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2679) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2679) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2679) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2679) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2679) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2679) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2679) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2679) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2679) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2679) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2679) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2679) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2679) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2679) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2679) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 2679) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jan 16, 2013 this sequence version replaced NM_001144634.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2679 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2679 /gene="CG5746" /locus_tag="Dmel_CG5746" /gene_synonym="Dmel\CG5746" /map="95F14-95F14" /db_xref="FLYBASE:FBgn0039186" /db_xref="GeneID:42903" CDS 318..1760 /gene="CG5746" /locus_tag="Dmel_CG5746" /gene_synonym="Dmel\CG5746" /note="CG5746 gene product from transcript CG5746-RC; CG5746-PC" /codon_start=1 /product="uncharacterized protein, isoform C" /protein_id="NP_001138106.1" /db_xref="FLYBASE:FBpp0271790" /db_xref="GeneID:42903" /db_xref="FLYBASE:FBgn0039186" /translation="MEGGSVSSPSMGGPRGGGFRGRGGGAPMRGGFDRGRGRGGRGHF MGGMRGGGGSGMGGGPPMQGMMSGPPRGMRGSRGGMGYQGRGGGYQPRGGAPMGMRGG RPPLYSQPPKQHTGAENNKTVSPVPTSAISGEQPAVEAAGDEVTDGQTSAVVPSSGNS HGGSSAPGGSNGGGPPPYLGRGRGRGGPFSGRGRGGGGYNSHMNGSGGGSMYGGSHSH HGNSMGGGPGSEHGSMPRRGGPRGRGGYNQGMSRPPLHHHQAHNPNTQLAPVPALKRG APGGPGPKRGRYEGGPYGQRPMTPKYHSTQQHMGGGGGGGMSSQSSYGSPPSHHAPQQ SHHSYQTHEQTQQVDPYAQSGYSTQTTQQGYNGYGQSGSSSYAAHTSQTSAPASSSYG AHHSTEYDQSQYQNYNSTGYAAPQDTRYQSYSQDYSQQYGSTAVDYNATGQADYSQHG AQSTGYDERAYAGYDSQAYSQNYSNAAAYY" ORIGIN 1 aatcaatagt cgccgccata ttttttcact gaatgaagac caacgcgctt cgcacaccga 61 ataatgttaa gttaaataag ttatttaaga taagctactg ttgaaagtgc gccgagtgac 121 caagtgacca gtaagcatca atagaaacga ttagtcgcta gcaatagttc ctcgaatcgt 181 caatctgcgg catcctaacg ctgcttcttc ttcttcctcc ggcttcagca gtcttaaaat 241 ccgcgtccga gtgcgaagaa taccagtgca agtggtagtg cgtgtgatct agtgtacgag 301 aacagcgaga gaggagcatg gaaggaggct cagtgtcctc gccatcgatg ggcggtccac 361 gtggaggcgg tttccgtgga cggggcggtg gagcgcctat gcgcggtggc ttcgatcgcg 421 gacgtggtcg tggcggtcgt ggacacttta tgggtggcat gcgcggaggc ggcggcagcg 481 gaatgggcgg aggaccgccc atgcagggca tgatgtcggg tcctccgagg ggaatgcgtg 541 gatcccgtgg tggaatgggc tatcagggac gcggcggcgg ttatcagccg cgtggtggcg 601 ctcccatggg catgcggggc ggtcgcccac ctttgtactc gcagcctccc aaacaacaca 661 caggtgccga gaacaacaag accgtatcac cagtgcccac ctcggcgatc agtggagaac 721 agccagcggt tgaagcagcc ggtgatgagg tcaccgatgg ccagacatca gcggtcgtcc 781 cgtcttcggg caactcgcat ggcggcagtt ccgctcctgg gggcagcaac ggaggaggac 841 ctcctccata tctgggccgt ggacgtggac gtggtggtcc cttcagtgga cgtggacgtg 901 gtggcggcgg ctacaattcg cacatgaacg gcagtggagg cggcagcatg tacggtggct 961 cccacagcca ccacggcaat tccatgggcg gcggtccggg cagcgagcac ggttcgatgc 1021 ccaggcgcgg aggtcctcgg ggcaggggcg gctacaatca aggtatgagt cggccaccct 1081 tgcatcacca tcaggcacat aatcccaata cacaacttgc accggtacca gctctcaaac 1141 gcggcgctcc cggtggtcct ggtcccaaac gcggtcgcta cgagggcggt ccatatggcc 1201 aacggcccat gacgcccaag taccattcaa cacagcagca tatgggtggt ggaggaggcg 1261 gcggcatgtc ttcgcagtcc tcttatggct cgccgccaag tcaccatgcg ccacaacaaa 1321 gccatcacag ctatcagaca cacgagcaga cccaacaagt ggacccctac gcgcagagcg 1381 gttacagcac ccagaccacc cagcagggat acaatggcta tggccagagc ggtagcagca 1441 gctatgcggc tcacacatcg cagacaagtg ctccggcgag cagcagctac ggagcccacc 1501 acagcaccga atacgatcag agccagtatc agaactacaa ctcgacgggc tatgccgcac 1561 cgcaggatac acggtatcag tcgtacagcc aggactacag ccaacagtat ggctcgactg 1621 cagtggacta caatgctacc ggacaagcgg actacagcca gcacggagcg caaagcactg 1681 gctacgatga gcgtgcctac gcgggttatg attcgcaggc gtactcgcag aactattcaa 1741 atgcagccgc ctactactaa acaaccactt cccactccca cccctgacgg cacactagag 1801 aacagaacgc tgcgcgtgct tcgataggcc aaaaaaccaa ataagaaggg actagggcag 1861 agtaacatgg aagggaatat atgtttaatg caacaattaa cttgctatac ataacacgca 1921 aacacacaca tacgcggtca ctcaaagcat acaattttag ttttaagtat aaagttctct 1981 ttttcttagc atttaagcaa actagtgttt cgacgtcttt ctacataaac ccccacccca 2041 aattaacatc cccctttgtt tccgtttcgt ctccccatga gtactgaaca gatatattga 2101 aataatccgc cttgcctgtt gtttaatgtt ctctaaatag acaaacggag ctagactgca 2161 ctgagctcca gcctaagaaa attaaatgtg ctcctcctta gttccattta caattacaag 2221 tcaactgtga ccaaagtatg ctacaatcat attttttata tgacggaaaa atgagagtac 2281 gtaacatgat cttttgaatg aactaaattt aaacattttg tgaatcatgt aaaattgtat 2341 acaaatgaat gcaatgtata ttttagtttt taagctgaaa accgcaatcc actctcgaca 2401 caattatttt ctatcccaca tgcatctgaa agcgtttatg attttgcaag attgtgtttt 2461 tttctttatg aatgacaaaa acgtgacaaa agcgtgactt attacttttt tgttttacaa 2521 aaacctctta tagtgacaat ttaagcaaaa aaaaaagttc gtaataatgt aactccttaa 2581 atttaagctg aaaaaaaaaa caagtaacga aatacacaaa gtatattaga aaaagatgca 2641 aaaaccataa ccataatcaa agtcaataaa ataatgttc //