Dbfetch

LOCUS       NM_001144559            2589 bp    mRNA    linear   INV 26-DEC-2023
DEFINITION  Drosophila melanogaster glucose transporter 4 enhancer factor,
            transcript variant E (Glut4EF), mRNA.
ACCESSION   NM_001144559
VERSION     NM_001144559.2
DBLINK      BioProject: PRJNA164
            BioSample: SAMN02803731
KEYWORDS    RefSeq.
SOURCE      Drosophila melanogaster (fruit fly)
  ORGANISM  Drosophila melanogaster
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE   1  (bases 1 to 2589)
  AUTHORS   Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
            Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
            Strelets,V., Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: Impact of
            High-Throughput Data
  JOURNAL   G3 (Bethesda) 5 (8), 1721-1736 (2015)
   PUBMED   26109357
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2589)
  AUTHORS   Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
            Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
            Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: The
            Rule-Benders
  JOURNAL   G3 (Bethesda) 5 (8), 1737-1749 (2015)
   PUBMED   26109356
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2589)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
            Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
            Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
            Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
            Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
            Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
  TITLE     The Release 6 reference sequence of the Drosophila melanogaster
            genome
  JOURNAL   Genome Res 25 (3), 445-458 (2015)
   PUBMED   25589440
REFERENCE   4  (bases 1 to 2589)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
            Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
            Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
  TITLE     Sequence finishing and mapping of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1625-1628 (2007)
   PUBMED   17569867
REFERENCE   5  (bases 1 to 2589)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  TITLE     The Release 5.1 annotation of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1586-1591 (2007)
   PUBMED   17569856
  REMARK    Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE   6  (bases 1 to 2589)
  AUTHORS   Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
            Ashburner,M. and Anxolabehere,D.
  TITLE     Combined evidence annotation of transposable elements in genome
            sequences
  JOURNAL   PLoS Comput Biol 1 (2), 166-175 (2005)
   PUBMED   16110336
REFERENCE   7  (bases 1 to 2589)
  AUTHORS   Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
            Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
            Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
            Celniker,S.E., Rubin,G.M. and Karpen,G.H.
  TITLE     Heterochromatic sequences in a Drosophila whole-genome shotgun
            assembly
  JOURNAL   Genome Biol 3 (12), RESEARCH0085 (2002)
   PUBMED   12537574
REFERENCE   8  (bases 1 to 2589)
  AUTHORS   Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
            Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
            Rubin,G.M., Ashburner,M. and Celniker,S.E.
  TITLE     The transposable elements of the Drosophila melanogaster
            euchromatin: a genomics perspective
  JOURNAL   Genome Biol 3 (12), RESEARCH0084 (2002)
   PUBMED   12537573
REFERENCE   9  (bases 1 to 2589)
  AUTHORS   Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
            Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
            Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
            Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
            Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
            Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
            Rubin,G.M. and Lewis,S.E.
  TITLE     Annotation of the Drosophila melanogaster euchromatic genome: a
            systematic review
  JOURNAL   Genome Biol 3 (12), RESEARCH0083 (2002)
   PUBMED   12537572
REFERENCE   10 (bases 1 to 2589)
  AUTHORS   Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
            Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
            Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
            Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
            Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
            Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
            Gibbs,R.A. and Rubin,G.M.
  TITLE     Finishing a whole-genome shotgun: release 3 of the Drosophila
            melanogaster euchromatic genome sequence
  JOURNAL   Genome Biol 3 (12), RESEARCH0079 (2002)
   PUBMED   12537568
REFERENCE   11 (bases 1 to 2589)
  AUTHORS   Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
            Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
            George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
            Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
            Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
            Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
            Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
            Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
            Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
            Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
            Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
            Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
            Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
            Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
            Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
            Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
            Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
            Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
            Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
            Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
            Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
            Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
            Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
            McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
            Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
            Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
            Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
            Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
            Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
            Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
            Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
            Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
            Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
            Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
            Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
            Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
            Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
  TITLE     The genome sequence of Drosophila melanogaster
  JOURNAL   Science 287 (5461), 2185-2195 (2000)
   PUBMED   10731132
REFERENCE   12 (bases 1 to 2589)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
            Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
            Smith,E., Yu,C. and Rubin,G.
  CONSRTM   Berkeley Drosophila Genome Project
  TITLE     Drosophila melanogaster release 4 sequence
  JOURNAL   Unpublished
REFERENCE   13 (bases 1 to 2589)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   14 (bases 1 to 2589)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   15 (bases 1 to 2589)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   16 (bases 1 to 2589)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2020) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   17 (bases 1 to 2589)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (22-APR-2019) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   18 (bases 1 to 2589)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   19 (bases 1 to 2589)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   20 (bases 1 to 2589)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2015) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   21 (bases 1 to 2589)
  AUTHORS   Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
            Park,S., Svirskas,R. and Karpen,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
            Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   22 (bases 1 to 2589)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
            Svirskas,R. and Rubin,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
            64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   23 (bases 1 to 2589)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  CONSRTM   Drosophila Heterochromatin Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
            Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
            Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE   24 (bases 1 to 2589)
  AUTHORS   Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
            Rockville, MD 20850, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by FlyBase. This
            record is derived from an annotated genomic sequence (NT_033777).
            
            On Dec 17, 2009 this sequence version replaced NM_001144559.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: FlyBase
            Annotation Status   :: Full annotation
            Annotation Version  :: Release 6.54
            URL                 :: http://flybase.org
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2589
                     /organism="Drosophila melanogaster"
                     /mol_type="mRNA"
                     /db_xref="taxon:7227"
                     /chromosome="3R"
                     /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
                     bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
     gene            1..2589
                     /gene="Glut4EF"
                     /locus_tag="Dmel_CG34360"
                     /old_locus_tag="CG12802"
                     /old_locus_tag="CG33975"
                     /old_locus_tag="Dmel_CG12802"
                     /old_locus_tag="Dmel_CG33975"
                     /gene_synonym="BcDNA:GH25505; BcDNA:GM06804;
                     BcDNA:RE66512; BcDNA:RH63124; CG11676; CG12802; CG12804;
                     CG12805; CG32469; CG33975; CG34360; CG43757; D-Glut4EF;
                     Dmel\CG34360; Glut; stretch"
                     /exception="dicistronic gene"
                     /note="Glucose transporter 4 enhancer factor"
                     /map="85E14-85F5"
                     /db_xref="FLYBASE:FBgn0267336"
                     /db_xref="GeneID:41217"
     CDS             922..1335
                     /gene="Glut4EF"
                     /locus_tag="Dmel_CG34360"
                     /old_locus_tag="CG12802"
                     /old_locus_tag="CG33975"
                     /old_locus_tag="Dmel_CG12802"
                     /old_locus_tag="Dmel_CG33975"
                     /gene_synonym="BcDNA:GH25505; BcDNA:GM06804;
                     BcDNA:RE66512; BcDNA:RH63124; CG11676; CG12802; CG12804;
                     CG12805; CG32469; CG33975; CG34360; CG43757; D-Glut4EF;
                     Dmel\CG34360; Glut; stretch"
                     /note="CG34360 gene product from transcript CG34360-RE;
                     CG34360-PE; Glut4EF-PE; BcDNA:GM06804; stretched out;
                     BcDNA:GH25505"
                     /codon_start=1
                     /product="glucose transporter 4 enhancer factor, isoform
                     E"
                     /protein_id="NP_001138031.1"
                     /db_xref="FLYBASE:FBpp0113075"
                     /db_xref="GeneID:41217"
                     /db_xref="FLYBASE:FBgn0267336"
                     /translation="MSGERRRTTTHSIEVPSQLTAQHNSRKRPPSDHQDYGNYLETCR
                     AAEILSSMKLQSPHGSMADKCSSPGSSSSASWSSGSPSPPLSDDGHAHHSPHNIMSPH
                     DADNARTRTASVSTSDEGIVIDYKEERKKKVGDSI"
ORIGIN      
        1 attctttaaa gcgcgcgcga acctttcgca ccaacagacc gcagatacaa agatacaaaa
       61 attcgcaaaa cactgaaaat tcgcaagacc gaaaatcgca aaaagtaact gcaaagcaag
      121 ctaaccgagt ggaaaagcaa atagcccggg cagccgaaaa gtgcaagtga agtgcggagt
      181 gtcgagtgtg gagtgtggag agtggagttc tgagtttcac cactgccaac ttaccagaga
      241 tataaaataa aaacaaatta ggaacgacgg aggcctagtg gcccaaattc agaacggcaa
      301 aatcagaaag cagagaagat caagcgaaaa tttgaataat taaaaataaa cacgcgccgt
      361 gcgagagagt gtgagtgtgc gtgccgtgta tccgtcagat acgcaaagca aagcataagc
      421 aaatcgctga cgtattttcc cccgaatacc gttatatagc cggccggctt tttgtgccca
      481 attaacgcac attcaacaaa ttgcccagac gcgaaaaaca aattgtaaca ttgtatcgga
      541 atatcgaatt aaagcccagt gtatccatcc acccgtaata aattgaagca aaaaataaaa
      601 aagaacagaa acaacataaa accgaaaagg gaaaccatac acttaccttt cgtctcattt
      661 aatttcgttg cggttcgttc tggtgcagtg taatagagaa aagtttataa ataaaatata
      721 caatatacaa ataactgaat gcagatgttt ggcataataa gtgtcacaat caattgctaa
      781 gcggcgagat cttgaaaaat acgctaaaag gaacccattg agctgaagaa gcgactggag
      841 gaagtgcgtc tgctggaatc gcgacgctcc gcccgtctgg cagaccagga tcgcgacacg
      901 gactttgcca gactcgccga catgagtggc gaacgccgca gaaccaccac acacagtatt
      961 gaggtgccat cgcagctgac ggcgcagcac aattcccgga aacgtccgcc cagcgatcac
     1021 caggactacg gcaactatct ggaaacatgc cgtgccgccg agattctgtc atcgatgaag
     1081 ttgcagagtc cgcatggctc aatggccgac aagtgctcga gtcccggcag cagctcttcg
     1141 gcttcctgga gctccggttc cccgtcgccg ccattgagtg acgacggcca cgcccaccac
     1201 agcccacaca atatcatgtc gccccacgat gcggacaacg cacgcacacg cacagcatcc
     1261 gtgtccacgt cggacgaggg cattgtcatc gactacaagg aggagcgcaa gaaaaaggtg
     1321 ggtgattcga tctaaggccc caacatctag atataagaaa catatagaga ttggtgtaca
     1381 agaatgcggt cagaagaatc tgggctaacg gcggtggagc gtgacatttt gttgcatttt
     1441 aattgcaact ttgtgtatag attttaattg ctataattat gtaaatgtcg gtctgttctt
     1501 ggcacggcca cacggcgtat gcttgatgcc caatactcat acgcaatgta gcgctgctgc
     1561 tgccggcgaa agaatacaga atatatagaa tatcaaataa atgtcgacaa tgattcaagc
     1621 acaggagaat ggcaacgcat caatcacaca aaagggcaat gtcagcagct cgttaacttg
     1681 tcaaacacac agacacacac aaacacacac accgcacaca cggcgaaatc caacaaaatc
     1741 aataaccccc agccatacga taccgatttt caggcatact ccgagagttc tagctcttta
     1801 attaattatg tttgaacttt aagggtctca gaccgagaaa ccgaaacaac cgaaacttac
     1861 gcaactgaaa accagcacgg aaacgaacag caacgccccc atccagaaaa cttctgcccg
     1921 tctgcctttt gtttgcccaa ctagttacgc tttctcaccc gctcgtgtgt ttggctattt
     1981 cgtttagagc ttttaagggc tcttaatagc aaacaaacaa aaacctaaaa aacgagcagc
     2041 cggcaacgac agaaataaca acaaccatag ccgagtacaa atatcaaagt gagcagcagc
     2101 cgcggtagaa tatgttaacc ttgaaagtct gattagattt tcatatggtg gctatatgtt
     2161 ttatttacac aacgtcaagc ccaaagcaac aacgaaaaaa taatacactt gaccaaaaga
     2221 gtttgattgg tatattttat attggaaaat attcaacact tgatccatga tgtaaatcat
     2281 ttaaatatat tcagcccatc agattgctgt ttagaatata caatgaccat tgcccccaac
     2341 ccatatgatt catacctagg gcgttgagtc tattgacttg ataaataagg attggaaatt
     2401 taccggactc cccatagcga cttaacttct cgcccaagtc caatcaattt tccactcgtt
     2461 tcaattagtc aaacgttttc gaatcttgct gccagcaatt gcactttcac ttttcatata
     2521 cctgttgcac aaccgagccg aaaaagctga ccaaagcgtc aaacttcctg ttccgttcgt
     2581 ctacaaaag
//