Dbfetch
LOCUS NM_001144559 2589 bp mRNA linear INV 26-DEC-2023
DEFINITION Drosophila melanogaster glucose transporter 4 enhancer factor,
transcript variant E (Glut4EF), mRNA.
ACCESSION NM_001144559
VERSION NM_001144559.2
DBLINK BioProject: PRJNA164
BioSample: SAMN02803731
KEYWORDS RefSeq.
SOURCE Drosophila melanogaster (fruit fly)
ORGANISM Drosophila melanogaster
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE 1 (bases 1 to 2589)
AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
Strelets,V., Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: Impact of
High-Throughput Data
JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015)
PUBMED 26109357
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2589)
AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: The
Rule-Benders
JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015)
PUBMED 26109356
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 2589)
AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
TITLE The Release 6 reference sequence of the Drosophila melanogaster
genome
JOURNAL Genome Res 25 (3), 445-458 (2015)
PUBMED 25589440
REFERENCE 4 (bases 1 to 2589)
AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
TITLE Sequence finishing and mapping of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1625-1628 (2007)
PUBMED 17569867
REFERENCE 5 (bases 1 to 2589)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
TITLE The Release 5.1 annotation of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1586-1591 (2007)
PUBMED 17569856
REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE 6 (bases 1 to 2589)
AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
Ashburner,M. and Anxolabehere,D.
TITLE Combined evidence annotation of transposable elements in genome
sequences
JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005)
PUBMED 16110336
REFERENCE 7 (bases 1 to 2589)
AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
Celniker,S.E., Rubin,G.M. and Karpen,G.H.
TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly
JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002)
PUBMED 12537574
REFERENCE 8 (bases 1 to 2589)
AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
Rubin,G.M., Ashburner,M. and Celniker,S.E.
TITLE The transposable elements of the Drosophila melanogaster
euchromatin: a genomics perspective
JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002)
PUBMED 12537573
REFERENCE 9 (bases 1 to 2589)
AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
Rubin,G.M. and Lewis,S.E.
TITLE Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review
JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002)
PUBMED 12537572
REFERENCE 10 (bases 1 to 2589)
AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
Gibbs,R.A. and Rubin,G.M.
TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence
JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002)
PUBMED 12537568
REFERENCE 11 (bases 1 to 2589)
AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
TITLE The genome sequence of Drosophila melanogaster
JOURNAL Science 287 (5461), 2185-2195 (2000)
PUBMED 10731132
REFERENCE 12 (bases 1 to 2589)
AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
Smith,E., Yu,C. and Rubin,G.
CONSRTM Berkeley Drosophila Genome Project
TITLE Drosophila melanogaster release 4 sequence
JOURNAL Unpublished
REFERENCE 13 (bases 1 to 2589)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 14 (bases 1 to 2589)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 15 (bases 1 to 2589)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 16 (bases 1 to 2589)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 17 (bases 1 to 2589)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 18 (bases 1 to 2589)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 19 (bases 1 to 2589)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 20 (bases 1 to 2589)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 21 (bases 1 to 2589)
AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
Park,S., Svirskas,R. and Karpen,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 22 (bases 1 to 2589)
AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
Svirskas,R. and Rubin,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 23 (bases 1 to 2589)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
CONSRTM Drosophila Heterochromatin Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE 24 (bases 1 to 2589)
AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
Rockville, MD 20850, USA
COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This
record is derived from an annotated genomic sequence (NT_033777).
On Dec 17, 2009 this sequence version replaced NM_001144559.1.
##Genome-Annotation-Data-START##
Annotation Provider :: FlyBase
Annotation Status :: Full annotation
Annotation Version :: Release 6.54
URL :: http://flybase.org
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2589
/organism="Drosophila melanogaster"
/mol_type="mRNA"
/db_xref="taxon:7227"
/chromosome="3R"
/genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
gene 1..2589
/gene="Glut4EF"
/locus_tag="Dmel_CG34360"
/old_locus_tag="CG12802"
/old_locus_tag="CG33975"
/old_locus_tag="Dmel_CG12802"
/old_locus_tag="Dmel_CG33975"
/gene_synonym="BcDNA:GH25505; BcDNA:GM06804;
BcDNA:RE66512; BcDNA:RH63124; CG11676; CG12802; CG12804;
CG12805; CG32469; CG33975; CG34360; CG43757; D-Glut4EF;
Dmel\CG34360; Glut; stretch"
/exception="dicistronic gene"
/note="Glucose transporter 4 enhancer factor"
/map="85E14-85F5"
/db_xref="FLYBASE:FBgn0267336"
/db_xref="GeneID:41217"
CDS 922..1335
/gene="Glut4EF"
/locus_tag="Dmel_CG34360"
/old_locus_tag="CG12802"
/old_locus_tag="CG33975"
/old_locus_tag="Dmel_CG12802"
/old_locus_tag="Dmel_CG33975"
/gene_synonym="BcDNA:GH25505; BcDNA:GM06804;
BcDNA:RE66512; BcDNA:RH63124; CG11676; CG12802; CG12804;
CG12805; CG32469; CG33975; CG34360; CG43757; D-Glut4EF;
Dmel\CG34360; Glut; stretch"
/note="CG34360 gene product from transcript CG34360-RE;
CG34360-PE; Glut4EF-PE; BcDNA:GM06804; stretched out;
BcDNA:GH25505"
/codon_start=1
/product="glucose transporter 4 enhancer factor, isoform
E"
/protein_id="NP_001138031.1"
/db_xref="FLYBASE:FBpp0113075"
/db_xref="GeneID:41217"
/db_xref="FLYBASE:FBgn0267336"
/translation="MSGERRRTTTHSIEVPSQLTAQHNSRKRPPSDHQDYGNYLETCR
AAEILSSMKLQSPHGSMADKCSSPGSSSSASWSSGSPSPPLSDDGHAHHSPHNIMSPH
DADNARTRTASVSTSDEGIVIDYKEERKKKVGDSI"
ORIGIN
1 attctttaaa gcgcgcgcga acctttcgca ccaacagacc gcagatacaa agatacaaaa
61 attcgcaaaa cactgaaaat tcgcaagacc gaaaatcgca aaaagtaact gcaaagcaag
121 ctaaccgagt ggaaaagcaa atagcccggg cagccgaaaa gtgcaagtga agtgcggagt
181 gtcgagtgtg gagtgtggag agtggagttc tgagtttcac cactgccaac ttaccagaga
241 tataaaataa aaacaaatta ggaacgacgg aggcctagtg gcccaaattc agaacggcaa
301 aatcagaaag cagagaagat caagcgaaaa tttgaataat taaaaataaa cacgcgccgt
361 gcgagagagt gtgagtgtgc gtgccgtgta tccgtcagat acgcaaagca aagcataagc
421 aaatcgctga cgtattttcc cccgaatacc gttatatagc cggccggctt tttgtgccca
481 attaacgcac attcaacaaa ttgcccagac gcgaaaaaca aattgtaaca ttgtatcgga
541 atatcgaatt aaagcccagt gtatccatcc acccgtaata aattgaagca aaaaataaaa
601 aagaacagaa acaacataaa accgaaaagg gaaaccatac acttaccttt cgtctcattt
661 aatttcgttg cggttcgttc tggtgcagtg taatagagaa aagtttataa ataaaatata
721 caatatacaa ataactgaat gcagatgttt ggcataataa gtgtcacaat caattgctaa
781 gcggcgagat cttgaaaaat acgctaaaag gaacccattg agctgaagaa gcgactggag
841 gaagtgcgtc tgctggaatc gcgacgctcc gcccgtctgg cagaccagga tcgcgacacg
901 gactttgcca gactcgccga catgagtggc gaacgccgca gaaccaccac acacagtatt
961 gaggtgccat cgcagctgac ggcgcagcac aattcccgga aacgtccgcc cagcgatcac
1021 caggactacg gcaactatct ggaaacatgc cgtgccgccg agattctgtc atcgatgaag
1081 ttgcagagtc cgcatggctc aatggccgac aagtgctcga gtcccggcag cagctcttcg
1141 gcttcctgga gctccggttc cccgtcgccg ccattgagtg acgacggcca cgcccaccac
1201 agcccacaca atatcatgtc gccccacgat gcggacaacg cacgcacacg cacagcatcc
1261 gtgtccacgt cggacgaggg cattgtcatc gactacaagg aggagcgcaa gaaaaaggtg
1321 ggtgattcga tctaaggccc caacatctag atataagaaa catatagaga ttggtgtaca
1381 agaatgcggt cagaagaatc tgggctaacg gcggtggagc gtgacatttt gttgcatttt
1441 aattgcaact ttgtgtatag attttaattg ctataattat gtaaatgtcg gtctgttctt
1501 ggcacggcca cacggcgtat gcttgatgcc caatactcat acgcaatgta gcgctgctgc
1561 tgccggcgaa agaatacaga atatatagaa tatcaaataa atgtcgacaa tgattcaagc
1621 acaggagaat ggcaacgcat caatcacaca aaagggcaat gtcagcagct cgttaacttg
1681 tcaaacacac agacacacac aaacacacac accgcacaca cggcgaaatc caacaaaatc
1741 aataaccccc agccatacga taccgatttt caggcatact ccgagagttc tagctcttta
1801 attaattatg tttgaacttt aagggtctca gaccgagaaa ccgaaacaac cgaaacttac
1861 gcaactgaaa accagcacgg aaacgaacag caacgccccc atccagaaaa cttctgcccg
1921 tctgcctttt gtttgcccaa ctagttacgc tttctcaccc gctcgtgtgt ttggctattt
1981 cgtttagagc ttttaagggc tcttaatagc aaacaaacaa aaacctaaaa aacgagcagc
2041 cggcaacgac agaaataaca acaaccatag ccgagtacaa atatcaaagt gagcagcagc
2101 cgcggtagaa tatgttaacc ttgaaagtct gattagattt tcatatggtg gctatatgtt
2161 ttatttacac aacgtcaagc ccaaagcaac aacgaaaaaa taatacactt gaccaaaaga
2221 gtttgattgg tatattttat attggaaaat attcaacact tgatccatga tgtaaatcat
2281 ttaaatatat tcagcccatc agattgctgt ttagaatata caatgaccat tgcccccaac
2341 ccatatgatt catacctagg gcgttgagtc tattgacttg ataaataagg attggaaatt
2401 taccggactc cccatagcga cttaacttct cgcccaagtc caatcaattt tccactcgtt
2461 tcaattagtc aaacgttttc gaatcttgct gccagcaatt gcactttcac ttttcatata
2521 cctgttgcac aaccgagccg aaaaagctga ccaaagcgtc aaacttcctg ttccgttcgt
2581 ctacaaaag
//