Dbfetch
LOCUS NM_001144327 3150 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster Dpr-interacting protein epsilon (DIP-epsilon), mRNA. ACCESSION NM_001144327 VERSION NM_001144327.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3150) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3150) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3150) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3150) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3150) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3150) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3150) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3150) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3150) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3150) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3150) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3150) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3150) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3150) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3150) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3150) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3150) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3150) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3150) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3150) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3150) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3150) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3150) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3150) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3150) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Jul 15, 2014 this sequence version replaced NM_001144327.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3150 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3150 /gene="DIP-epsilon" /locus_tag="Dmel_CG42368" /old_locus_tag="Dmel_CG9508" /old_locus_tag="Dmel_CG9511" /gene_synonym="42368; CG13981; CG33295; CG42368; CG9508; CG9511; DIPepsilon; Dmel\CG42368" /note="Dpr-interacting protein epsilon" /map="26C4-26D1" /db_xref="FLYBASE:FBgn0259714" /db_xref="GeneID:7354433" CDS 678..2081 /gene="DIP-epsilon" /locus_tag="Dmel_CG42368" /old_locus_tag="Dmel_CG9508" /old_locus_tag="Dmel_CG9511" /gene_synonym="42368; CG13981; CG33295; CG42368; CG9508; CG9511; DIPepsilon; Dmel\CG42368" /note="CG42368 gene product from transcript CG42368-RA; CG42368-PA; DIP-epsilon-PA" /codon_start=1 /product="Dpr-interacting protein epsilon" /protein_id="NP_001137799.1" /db_xref="FLYBASE:FBpp0289244" /db_xref="GeneID:7354433" /db_xref="FLYBASE:FBgn0259714" /translation="MAYHLEAISSFLYVGLGCLIASSVALSTDTGSEGNAGNVGGSTL NNVISEDPEFTDVIENITVPAGRNVKLACSVKNLGSYKVAWMHFEQSAILTVHNHVIT RNPRISVTHDKHDKHRTWFLHINNVQEEDRGRYMCQINTVTAKTQYGFVKVVVPPNID DALTSSDIIVREGDNVTLRCKAKGSPEPTIKWKRDDGNKIVINKTLEVHDLETDSLEL ERISRLHMGAYLCIASNGVPPSVSKRIKVSVDFSPMVWIPHQLVGIPIGFNITLECFI EANPTSLNYWTRENDQMITESSKYKTETIPGHPSYKATMRLTITNVQSSDYGNYKCVA KNPRGDMDGNIKLYMSSPPTTQPPPTTTTLRRTTTTAAEIALDGYINTPLNGNGIGIV GEGPTNSVIASGKSSIKYLSNLNEIDKSKQKLTGSSPKGFDWSKGKSSGSHGNLMASS WPLICCILALLTTHSCG" ORIGIN 1 cagtgtgaaa tcggctgtcg tttcgttcgg ttgtcgttag tctgcggtac cgcatccgca 61 tcagtattcg cagtcgcagt cgcaatcgct tttgaatccc gaacccgaat cggtaacggt 121 atcagaacca gaatcggttt cgttagacgt gcgtggacgt ggtctttctt atttgcactg 181 gccaaatagt ttaaaatagt attttcgatt ggcattagtg gcggcgaatg gttgttgtaa 241 atcaactgct gtgagtgctt ttattcgata tcccatgcca tttatgcacc tccgctgccc 301 accggaggag ctgctggctt tgtgacggcg tctgtgtgtc tgccgcgtgg tcccctaatt 361 tagttatgtt gcaaaaacgg agaacggcag agggaaacat gaaaatccgt tgttatgttg 421 tctcgctgct ctatttataa attgatttgc tgattcctgc cgacatctga cgccccatcc 481 agcagccaga cattgccacg gggtagcgtg cataaaagcc aatcgcaatt aaacgttgat 541 cgattccaaa agcaaacaca acatgagccg gaatatactg taatgctgca caatatttgt 601 acgcaataaa taattaagtt ttcttaattg aaaagctaaa caacggtaaa aaaaaggggc 661 atcaaactta cagcaaaatg gcataccacc tcgaagcgat ttcttcgttt ctgtatgtgg 721 gccttggttg cctgattgcc tcctctgtgg cactaagtac agatactgga agtgaaggca 781 acgccggtaa cgtcggtggc tcaaccctaa ataatgtcat cagcgaagat cccgagttca 841 cggatgtgat cgaaaatatt acagtgcctg cggggcgtaa tgtaaaactg gcttgttcag 901 tcaagaacct gggatcctat aaggtcgcgt ggatgcactt cgagcagtcg gccattctca 961 cagttcacaa ccacgtgata acgcgtaatc caaggattag tgtcacccac gataagcatg 1021 acaagcaccg cacctggttc ctgcatatca acaatgtcca ggaggaggac aggggccgat 1081 acatgtgcca aatcaatacg gttacggcca agacccagta tggatttgtc aaagtagtgg 1141 tgccgccgaa tatagacgac gctctgacct ccagtgacat catcgtgcgc gagggcgata 1201 acgttacgct acgctgcaag gcgaaaggta gtccggagcc gaccatcaaa tggaaacgcg 1261 atgacggcaa caaaatcgtt attaacaaga cgctcgaggt gcacgacttg gagacggatt 1321 ccctggagct ggagcggatt tcgcgactgc acatgggcgc ctacctgtgc atcgcatcga 1381 atggtgtgcc gccaagtgtg tccaagcgga tcaaagtcag cgtggacttt tcgcccatgg 1441 tctggatacc gcatcagctg gtgggtattc ccattggatt caacatcacc ctggaatgct 1501 tcatcgaggc gaatccgacc tcacttaact attggacgcg cgaaaacgat caaatgatca 1561 ctgagtcatc aaagtacaaa accgaaacca ttcccggcca tccgtcgtac aaggcgacca 1621 tgcggctcac gattaccaac gttcagagca gcgattatgg caactacaag tgcgtcgcca 1681 aaaatcctcg gggcgacatg gacggcaaca taaagctgta catgtcgagt ccgccgacaa 1741 cacaaccgcc gcccacaacc acaacgctgc ggcggacgac aacaaccgcg gcggaaatcg 1801 cactggacgg ctacatcaac acgcccctga atggcaatgg cattggcatt gtgggcgaag 1861 gacccacaaa ttcggtgatt gcgtccggca aatcgagcat taaataccta tcgaatctga 1921 acgagatcga caagtcgaag cagaagctga cgggcagcag tcccaaggga ttcgattggt 1981 ccaagggcaa gagcagcggg agtcatggca acctaatggc gtccagttgg cccctcatct 2041 gctgcatcct cgcactgctg acgacacact cgtgtggttg agaactatgt gcgattccat 2101 tttaataaag tgccattaca aacagtcgaa atgaaaggtg ttcgaagccg atgcatacga 2161 ttagccataa caactgtgta attaattaag cgaattgcaa tttgcaaacg ttaacgaagt 2221 caagctttgg ttttccccga aactccctat gcagcccatt aatatttgat tacgtttggt 2281 ggcgaaaacc acagcgtgtt tttaggcaaa caaagttacc aaattaatca acctcgcata 2341 tttgtttacc attcgttcgg aagcactcta aaatattttc taaaaattcg tttggtttta 2401 aaaccactat accatcggtg agggtatgcg aagaatgttg taaaaagcat ttcggcaggg 2461 ccaaagcaaa catgcgatgc aaaccaaagc acataaatcc tggttagtta gatataaaat 2521 caattaattt gcataaatac aagtgggaaa aaatagtata cccttcgaat gatgccaaat 2581 tgttaaaaag agagcactac tcactcacct ccaactgtaa ataagcgcgt atatgcatgg 2641 ataaaacccc aaatgcaatt gtaaattatg tactcgttat aggcactaga aatgaatgtt 2701 catttgtacg agagtaggca tcaaaccatt tcaaaactag atatttaacg ggaaagcgaa 2761 aggcttaaat actctgaaaa acaggcacct aaaatgcatt aatcaaaaac cattaaccta 2821 aataagtaac taagcaaata tgaattacga atattcacga ttgaagcgaa aactgttgat 2881 acataattta gttagctgat cagttaagac gggtttacag ttgagaaata atccaaataa 2941 agccaaatcc aaatatgtaa gttctaaact actcatacag aaatacatat atatatatat 3001 atttaaatac ctacatatat cataggcctt agtttgtgtt tcttaacgat aagagtgata 3061 atgtatattt attaacttgc tccccgagcg gaacaaactg gcactgcgaa agaaacaaat 3121 aaaatatcta tgtatttggg attgcttctt //