Dbfetch
LOCUS NM_001104018 3277 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster Poly(A) specific ribonuclease subunit PAN3 (PAN3), transcript variant Q, mRNA. ACCESSION NM_001104018 VERSION NM_001104018.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3277) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3277) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3277) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3277) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3277) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3277) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3277) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3277) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3277) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3277) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3277) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3277) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3277) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3277) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3277) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3277) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3277) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3277) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3277) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3277) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3277) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3277) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3277) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3277) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3277) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jan 16, 2013 this sequence version replaced NM_001104018.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3277 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3277 /gene="PAN3" /locus_tag="Dmel_CG11486" /gene_synonym="CG11486; Dmel\CG11486; pan3; Pan3" /note="Poly(A) specific ribonuclease subunit PAN3" /map="63A6-63B1" /db_xref="FLYBASE:FBgn0035397" /db_xref="GeneID:38369" CDS 579..2945 /gene="PAN3" /locus_tag="Dmel_CG11486" /gene_synonym="CG11486; Dmel\CG11486; pan3; Pan3" /note="CG11486 gene product from transcript CG11486-RQ; CG11486-PQ; PAN3-PQ; polyA-nuclease related" /codon_start=1 /product="Poly(A) specific ribonuclease subunit PAN3, isoform Q" /protein_id="NP_001097488.1" /db_xref="FLYBASE:FBpp0112044" /db_xref="GeneID:38369" /db_xref="FLYBASE:FBgn0035397" /translation="MSTFLNNFFPADTAAMDPIFFSPTNGIPSESKLATYMNRQNVAT PSGYGLNNGFSLLNLDSPLNKKSQVTPQSPEFIPTRLGSTPNFYAPYHNAPMQLSNGL NGVNGLTAAAAAAAAAAAAAAAAVPSSTSSASSASVTISKTANGGASMLALQKTASIA SVTIAQQQPQHPQKQQQHPPSVGGGAVSAASAPIAISGAPPNPAAAPFVSSMSAQTPL KGRGAMMRQESPTAAMISGAGPGEKSPPHGMTPHGASPIPSALPTSVHQENVGGTIYF YPTANAQNSQPVVNSMVVDGTHPALHGVSAVAPMSAGVPAAMMYTGHVYPGPSSNVVT MQPKTLLESAFFMPDEMRAEVLARNEISNLIMDAAEAAQHALPLEVENYHALYPLEPP AQPLHAKLTFPATTYRATHNTTGYKYCLRRIHGFRLQSTKCMTLVEMWKKLQHTNVVQ LREVFTTKAFGDNSLVLVYDYHPGSQTLLAKYFTPAPETNGYTDPFQGEARPFSHKSN MQRTSNGPLLPEATIWSIIMQLTAGLKAIHHAGLACKVLDPTKIIVTGKRVRFSSCCI SDITQFDPNASNPLALVNMHQQDDLTALGRLVLALACRCLQSVQRDNVQSSIDMVTRN YSTDLRNFIVYLFTTNNRRSVTDLMPMIGARFYTQLDALQSKIDMQEDELAKEMENGR LYRILVKLNSINERPDFNLDCTWSETGDRYMLKLFRDYLFHSVTEDGRPWLDHAHIVQ CLNKLDAGSIERVQLMSRDEQSVLIVSYAELKNCLENAFSELMSSAAN" ORIGIN 1 tcattcgtgc agcgccaatc gcgcggtgtg tgtgttgcgt ttttcttatt tgcaaaatcg 61 ttggaaaatg gtaatgaaaa tgtatacaat atagcaacag cagctccttt caaggaaata 121 tcctcattaa agtaattacg gtactgaaag caattcaaaa gctaacaatg aaacaggcaa 181 ttaactacac aatatgttgg cttaggttca gtgttcgacg cgcctcaatt gttaatcatt 241 tgcccgaaaa tgcatttcaa ctgcaagaaa cttacgtgaa aaagtgaaag aaaaaaatat 301 tttcgaaacg tacaatgtga aaatgtgtta tttgaaactt agcagttaag cgcggattgt 361 atgtattatt taaatttttg tttcaatatt ttctacaaaa ttattaaaaa gaactacaaa 421 aaaatcgaaa acaaaacgaa aaaaccaaga aaaagttttt aactcagtgc acattaaaac 481 gaaaacaaac gcaaaaacaa agcgtaacga aacgagaagg accacgaaaa gaaagagagc 541 gcacgaggaa ttggcgaagg cgggagcgaa agagaaaaat gtcaacgttc ttgaacaatt 601 tcttcccggc agatacggct gctatggatc caattttctt ctcgccaacg aatggaatac 661 cgtcagagag taaactcgcc acttatatga atcgacagaa tgtcgccaca ccgagcggtt 721 atgggctgaa taacgggttc tcactactta atttggattc gcccctaaat aaaaagtccc 781 aggtcacgcc gcagtcgccc gagttcattc caacgcgcct tggctcgacg cccaacttct 841 atgcaccata tcacaacgcg cccatgcaat taagtaatgg gctcaatggc gtcaatgggt 901 taacagccgc cgcagcagca gcagcagcag ccgccgccgc cgccgcagca gcagttccct 961 cctccacgtc atcggcgtcc tccgcctcgg tgaccatcag caaaacggcc aacggtggcg 1021 cctccatgct cgccctgcaa aagaccgcat ccatcgcctc tgtaaccatc gcacaacagc 1081 agccacagca tccacagaaa cagcaacagc atccgccgtc ggtgggcgga ggagctgtgt 1141 ccgccgcctc cgcccccatt gccattagtg gcgctccacc gaatcccgcc gcagctccgt 1201 tcgtcagcag catgtccgct cagacgccgc tcaaggggag gggcgccatg atgcgccagg 1261 aatcaccaac ggcagccatg atttcgggcg cagggccagg tgagaagtcg ccaccgcacg 1321 ggatgacgcc gcacggagca tcgcccatac catcagcgct gcccaccagc gtgcaccagg 1381 agaacgtagg cggcaccata tacttctatc cgactgccaa cgcacagaac agccagcccg 1441 tcgtcaattc catggtggtg gatggaacgc atccggctct ccatggcgtg agtgctgtgg 1501 cgccgatgag tgcgggcgtt ccggcggcca tgatgtacac ggggcatgtg tatccgggac 1561 cgtcctccaa cgtggtcacc atgcagccaa agacgctgct ggagtcggcc ttctttatgc 1621 ccgacgagat gcgcgccgaa gtcctcgccc gcaacgagat ctctaacctg atcatggacg 1681 cagcggaggc tgcgcagcac gctctaccgc tggaggtgga gaactaccat gccctgtatc 1741 cactggaacc gccggcgcag ccgttgcacg ccaagctcac gttccccgcc accacttata 1801 gggccacgca caacacgacg ggctacaagt actgcctgcg aagaatacat ggtttccgcc 1861 tgcagtcgac caagtgcatg acgctggtgg agatgtggaa gaagctgcag cacacgaatg 1921 tggtacaact gcgtgaggtg ttcacgacga aagcatttgg tgataactct ttagtattag 1981 tgtacgacta tcatcccggc tcacaaacat tactggccaa atacttcact ccggcgccag 2041 agaccaacgg gtacactgat ccattccaag gcgaggcccg ccccttcagt cataagagta 2101 acatgcagcg aacgagcaat ggaccgctgc taccggaggc caccatctgg tcgatcatca 2161 tgcagctgac cgccggctta aaagccatcc accatgccgg tcttgcctgc aaggttctgg 2221 atcccacaaa gattatagtg acgggcaagc gtgtacggtt tagctcatgc tgcatttcgg 2281 atataacgca attcgatccg aatgcatcca atcccttggc gctggttaat atgcatcagc 2341 aggacgatct gaccgctttg ggtcgcttag tattagcttt ggcctgccgc tgtcttcaat 2401 ccgtgcaacg cgacaatgtc cagtccagca tcgatatggt cacgcgaaac tactccaccg 2461 atctgcgaaa ctttattgtt tacctcttca ccaccaataa tcgtcgctcc gtgaccgacc 2521 tgatgccgat gattggtgcc cgcttctata cgcaactgga tgcactgcag agcaaaattg 2581 atatgcagga ggacgagttg gccaaggaga tggagaacgg gcggttatat cgcattttgg 2641 tcaaacttaa tagcatcaac gagcgacccg actttaatct ggactgcact tggtctgaga 2701 ctggtgatag atacatgttg aaattattcc gtgattattt gttccattcc gtcactgagg 2761 atggccggcc ctggctagat cacgcacaca ttgtacaatg cctcaacaag ctggatgctg 2821 gctccataga gcgcgtgcaa ctgatgtccc gcgacgagca atcggtactc atcgtctcct 2881 atgctgaact caagaattgt ctggagaacg ccttctccga actgatgtca agtgcggcca 2941 actgagcaac ccgagggtaa aagaaaaaca gaaaacacgc gcagctcact tagccaccat 3001 ccgcacgacc acaaaacgac tacgataaag gattagatac taagcaaaac attcattacg 3061 actaagacat tttgagaacc ataaacaagt aaaatacgaa gatgtttatt gttaagccaa 3121 accgaaaaag gaacttaaaa gaaaaaaaaa aagtgaaaac cgatatccaa tgttatgtta 3181 gctcttaact aaattttagg catttaaaac aatacaaaaa gaaacaaccg caaccacaaa 3241 aaataaacca acaacttttt gaaaccgaaa tctctcc //