Dbfetch
LOCUS NM_001103652 2953 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster lemming A (lmgA), transcript variant A, mRNA. ACCESSION NM_001103652 VERSION NM_001103652.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2953) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2953) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2953) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2953) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2953) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2953) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2953) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2953) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2953) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2953) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2953) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2953) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2953) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2953) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2953) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2953) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2953) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2953) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2953) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2953) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2953) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 2953) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2953) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 2953) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 2953) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Jan 16, 2013 this sequence version replaced NM_001103652.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2953 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2953 /gene="lmgA" /locus_tag="Dmel_CG34440" /old_locus_tag="CG18042" /old_locus_tag="Dmel_CG18042" /gene_synonym="Apc11; APC11; APC11/lmg; CG18042; CG34440; Dmel\CG34440; Dromel_CG18042_FBtr0079695_lmg_uORF; Img; l(2)03424; lmg; LMG; ORF1" /exception="dicistronic gene" /note="lemming A" /map="29D4-29D5" /db_xref="FLYBASE:FBgn0250903" /db_xref="GeneID:5740853" CDS 197..454 /gene="lmgA" /locus_tag="Dmel_CG34440" /old_locus_tag="CG18042" /old_locus_tag="Dmel_CG18042" /gene_synonym="Apc11; APC11; APC11/lmg; CG18042; CG34440; Dmel\CG34440; Dromel_CG18042_FBtr0079695_lmg_uORF; Img; l(2)03424; lmg; LMG; ORF1" /note="CG34440 gene product from transcript CG34440-RA; CG34440-PA; lmgA-PA; lemming" /codon_start=1 /product="lemming A, isoform A" /protein_id="NP_001097122.1" /db_xref="FLYBASE:FBpp0079303" /db_xref="GeneID:5740853" /db_xref="FLYBASE:FBgn0250903" /translation="MKVTIKSWTGVATWRWIANDENCGICRMSFESTCPECALPGDDC PLVWGVCSHCFHMHCIVKWLNLQPLNKQCPMCRQSWKFNVH" ORIGIN 1 gtccaatcgg ccaatcgata atcggaccta tcgacctatt ttcagcagcc taactaaaga 61 aaaaaggcaa tattttgcaa aaaacattcg gaaacggtcg aaaaacaccc gcttcattgg 121 ccaaaggagc cgtattccgt gcaacgcaaa gcggcgacaa accagacaat tgccgtgtga 181 gacaaatgtg cgcaaaatga aagtgacaat caagtcatgg acgggagttg caacttggcg 241 ttggatagcg aatgacgaga actgcggtat ctgtcgcatg tccttcgaga gcacctgccc 301 ggagtgcgct ctgcccggtg acgactgccc gctggtgtgg ggtgtatgct ctcattgctt 361 ccacatgcac tgcatcgtca agtggctgaa cctgcaaccg ttgaacaaac agtgccccat 421 gtgccgccag agctggaagt tcaacgtgca ttaagaagcc cgcgttatag ttctagttac 481 taaatacccg tgaggatcag gatcagcagt aagaagaaac cgtagagaca tagtaagctt 541 tatcaaatga tggagaacag cagcaacgat gcccagccgc acttgacggg tctgccgcca 601 ctgccaaaaa gtctgagcgc cgctacggcg gctcctgtgg ccattggccc ccatccccgc 661 acagcctcgc cggcgtccag tgttaacgca ctgaccgtag ccgccggaga actatacctg 721 ggcccctcca cctcctcgtc ggcggcatca cgaaatcgta gctacaatgg acacggacac 781 agccagcggc acggtagtct ttcgtccacg caggagtcgc tcagtgatcg ggaatctgtg 841 cacagtcgcg cttccagcac ccacagcgct ggggctgttc acacacccac taacagctcg 901 agcagcactg gagccacctc gtcgaccatc gacaaccagt tggccattct gcgacgggag 961 atgtacggtc tgaggcagtt ggatctgtcg ctgctgtccc agctgtgggc gctaaacgag 1021 tcgatacagg gattccgtgt gttcctgcaa gagcaggacg cactgtcgcc gccctcgagg 1081 tcccgtactc catcggatgc gaattccttg agctccgacg aagaggacga tggctcctat 1141 gcgccagtag ccttgcctaa gatgacagat actgccggag ctgggagtgc gggagttgtg 1201 aattccaggg ccatggcctc gccggcagcc agcggaggac tgcccacaaa actggccact 1261 ggctcgacca cttcccacgc ctcaactagc tccacatcag gagcctctgg ctcctcatcc 1321 gctgcctcct cgatggggaa gcaccaacaa gtgcagcagc aacaacagca acagtcgcaa 1381 tcggctaacc actaccatca gaggccagcg ccaccacccg caccaccagc tcagcacaag 1441 gcgcatccac agttgccgcg catcctgcag cagcgcatga gacaggcacc gccaccgccg 1501 ccacccacaa ggcaaaaggc gggcggcggt ggtggaggcg gagcgagcac cagcagcagt 1561 aaccacagca tcagcagtgt cacccagccg catccacatt cacaccaaca tccccaacat 1621 acccaccatt cgcgacctgt atgacaaaac ccgttcttgg actaagccaa gttcaagaac 1681 ataagcagat ttacatagca gccgctgcca acacttcgga aagggtcaat tagacgacat 1741 ttcttcaaga gtcaattcaa attcaagtgc agaaagatcc cacacacaca acactcactc 1801 tatcaactca actatcaact cataaagctt gccatggtcc ctcgttcttg atattgaatc 1861 tcgaaacata tgaacggttt ataaatgttt tttgcaaaac gatgaaaatg tctttgaatg 1921 taagcgtacc acttttcacg tttaatatta aataataaac acaaaaaatt tgtattcaat 1981 aataatcgct aagtagtaaa ggataagatc cttatatgca tctatgtatt actcaaattg 2041 tataaacata aatctaaaat gcttgaaatt ccgcatcgaa ttcatagatc tagttatatt 2101 atttgcgttg actctgaaat gttttgttag aatgcatact atccaacaac aaaaactaaa 2161 tcaaattgtt ccaactcatg tagcactaac caaaactaaa ctcttggcct atacatatga 2221 atatctggat tgattttata gccctgttaa gacttagttt cgtaatggcg tatcgattgg 2281 aaaattatat attacgaaca tgtatctgca tctcaaaagc aaaatctagc tgatcttact 2341 gttagtccaa taatcctatc attaaaaata caacaacaaa aaaaactagg catatatatg 2401 taaagctcaa gtattggagc aaatcccccg agcagttgtg cagtgcgttt cagatctata 2461 agtcagttgc atgttccgcg aagcagaaaa ccattttaaa ctagtttcgg ttgtatattt 2521 ttccaatttg ttcaaaaatc ttactccgca atcatggata actgccttgt aaatgtggaa 2581 cgcattgcat ataatattta tattctaaat acatatacaa tttttaccaa gtaacagtta 2641 cattgatgaa aatgcagtag ataccatcgg tatctcccat atcacaagca taaagcggga 2701 gattgcgaaa tgaaaacaga tttacatata ttacctaatc aaaaatgata caatttccaa 2761 tatttattgt tagttcttag attgttttat ttctcaaaac aaattcctta taatctacta 2821 aaattaaatc accctatgaa gttaaacgat tggaattaaa atccacacga tcatatttga 2881 ctgttcttta tttcgttatc atatacacac tcctccaaca gagactacaa atcaaaatgt 2941 gcggaaattt gat //