Dbfetch
LOCUS NM_001103452 2342 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster zinc finger DHHC-type containing 8, transcript variant C (Zdhhc8), mRNA. ACCESSION NM_001103452 VERSION NM_001103452.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2342) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2342) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2342) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2342) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2342) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2342) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2342) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2342) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2342) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2342) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2342) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2342) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2342) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2342) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2342) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2342) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2342) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2342) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2342) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2342) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2342) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2342) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2342) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001103452.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2342 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2342 /gene="Zdhhc8" /locus_tag="Dmel_CG34449" /old_locus_tag="CG32705" /old_locus_tag="Dmel_CG32705" /gene_synonym="anon-Pen16; CG12136; CG15372; CG17251; CG32705; CG34449; Dmel\CG34449; Dm_X:47283; dZDHHC8; p16; pen16; Pen16" /note="Zinc finger DHHC-type containing 8" /map="8D7-8D9" /db_xref="FLYBASE:FBgn0085478" /db_xref="GeneID:31887" CDS 739..2241 /gene="Zdhhc8" /locus_tag="Dmel_CG34449" /old_locus_tag="CG32705" /old_locus_tag="Dmel_CG32705" /gene_synonym="anon-Pen16; CG12136; CG15372; CG17251; CG32705; CG34449; Dmel\CG34449; Dm_X:47283; dZDHHC8; p16; pen16; Pen16" /EC_number="2.3.1.225" /note="CG34449 gene product from transcript CG34449-RC; CG34449-PC; Zdhhc8-PC" /codon_start=1 /product="zinc finger DHHC-type containing 8, isoform C" /protein_id="NP_001096922.1" /db_xref="FLYBASE:FBpp0111667" /db_xref="GeneID:31887" /db_xref="FLYBASE:FBgn0085478" /translation="MPKCDVKTRYIPATFAWIVLLLTTFLFFFYPCQFYVKSHPWVLA YQGVITFFVLANFTLATFMDPGIIPKASPDEDCEEELRAPLYKNAEINGITVKMKWCV TCKFYRPPRCSHCSVCNHCIETFDHHCPWVNNCIGRRNYRFFFFFLVSLSIHMLSIFS LCLVYVLKIMPNIKDTAPIVAIILMGLVTILAIPIFGLTGFHMVLVSRGRTTNEQVTG KFKGGYNPFSRGCWHNCCYTQFGPQYPSLLNPKKYASRRSQVQNQAISTICNDRSGQQ TGAGSGAGGNGTAAVSGGGGGVGSGGGMRGTAVQYSPRSFYDASREKRGIQLSPGREC SDTDLEPPPASQSQDCEPTPPLQRHNSSSFYLPQVSDSGGLNGSVSTGGGGGGDSPRH MRLYHPRHSPHARPRGLDPQRGYTSDALSPDHPVGYGVGVNGSQQQQQQALAAAAAAA AVAAQNQRSATTTATPTMQQRIKPLGVATPLVMASPVRSQYSNSENSTNS" ORIGIN 1 accgacgaaa ttatgcgtac gctccgctta ttttttattt attttttcgt aatgcgaacc 61 gaacgttcgc cgcccattag aatggaatga aaagtcgcac aaagccggga aaacagccgc 121 ttcaaaagcc agaactttga aaagtcgaag ctgaattttc cccgagtttt cccgattttc 181 cgtttcccgc gaatctgaaa gccgcgctgc cggcgtcgct gtctctgccg ccgtcgacgt 241 cgtcgatccc gtttcacgcg tcgccgcttc gtctcgccgt ctcgcttgtt tcccgccccc 301 tctctctctg cccctcgccc gaccccgcca cccgaccctc ctaccaaaag tacccccccc 361 ccccaaccaa aaaaaaaaat aaaatcatcc ttaaacaaaa tataaaagat acgaaataaa 421 acaacaaaca cacagagaga gagagcgagt gagatagata gattgagaga aagccaagtc 481 aagaaacgtc atcaagcggc agcagcaaca acaacaacag cagcaagcac aacaactgca 541 actgcaacca aaacggcaac ctcatcagcg acagcagcaa caaaaacaaa acgcatttca 601 ttgccaagaa gaaaaaaacg gtcaacgaca ctgcaacaac attggccaac agcaacaaca 661 acaaatcagc aatactgaga gactgcacta gcaacaacaa caactgaaac aacaaccaac 721 aaataggaaa ataggaaaat gcccaaatgc gatgtgaaaa cgcgctacat tcctgcgact 781 ttcgcctgga ttgtgctgct tctgaccaca tttctcttct tcttctatcc ctgccagttc 841 tatgtgaaga gtcatccatg ggtgctggcc taccagggcg tgatcacatt cttcgtgctg 901 gccaacttta cgctggccac gtttatggat ccgggcatca tccccaaagc ctcgcccgac 961 gaagactgcg aggaggagct gcgcgccccg ctctacaaga atgccgagat caacggcatc 1021 accgtcaaga tgaagtggtg cgtcacctgt aagttctatc gcccgccacg ctgttcccac 1081 tgctccgttt gcaatcactg catagagacc ttcgatcatc actgtccgtg ggtgaacaac 1141 tgcattggca ggcggaatta cagattcttt ttcttcttcc tcgtctcact gtccattcac 1201 atgctgagca tcttctcgct gtgcctggtc tacgtgctga agattatgcc caacatcaag 1261 gacacggcgc ccatcgtagc cattatcctg atgggcctgg tgaccatttt ggccatcccc 1321 atcttcggac tgaccggctt ccacatggta ctggtgtcgc ggggtcggac aaccaatgag 1381 caggtgacgg gaaaattcaa gggcggctac aatccgttct cgcgcggctg ttggcacaac 1441 tgctgctaca cacagttcgg acctcagtat cccagcctcc tcaatccgaa gaagtacgca 1501 tcgcgtcgat ctcaggtgca aaaccaggcg atcagcacca tttgcaatga ccggagcggc 1561 cagcagacag gcgccgggag cggtgccggc ggcaatggta ccgccgctgt atccggtggc 1621 ggcggtggag tgggcagcgg tggcggtatg cgcggcactg cggtgcagta ctcaccacgc 1681 tccttctacg acgcgagtcg cgagaagcgg ggaattcagc tatcgcccgg acgagagtgc 1741 tccgatacag acctggagcc gccgcccgca tcccagagtc aggactgtga accgacgcca 1801 ccgctgcagc ggcacaactc cagcagcttc tatctgccgc aggtgagcga ttctggcggc 1861 cttaacggca gtgtttccac gggcggcgga ggaggcggcg actcgccgcg ccacatgcgt 1921 ctctaccatc cgcgtcacag tccgcatgcg aggcccaggg gtcttgatcc gcagcggggc 1981 tacacgagcg acgccctatc gccggaccat cccgttggct atggcgttgg cgtcaatgga 2041 tcgcagcagc aacagcagca ggcgctggcg gcggcagcag cggcggcggc ggtggcagca 2101 caaaatcaac gcagcgcgac gaccacggcc acgcccacca tgcagcagcg gattaagccg 2161 ctgggcgtgg ccacgcccct cgtgatggcg agtccagtgc gaagtcaata ctcaaattct 2221 gagaacagta ctaattccta ggcttagctt aaagaaaaaa aaaagaaacc aaaacaatga 2281 agtccaacaa gaaacaaccg aaagaaccca agaaacaaaa ctaaaaaata cgaatacctt 2341 at //