Dbfetch
LOCUS NM_001085089 1338 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana histone acetyltransferase of the MYST family 2
(HAM2), mRNA.
ACCESSION NM_001085089
VERSION NM_001085089.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1338)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 1338)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1338)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1338)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
FEATURES Location/Qualifiers
source 1..1338
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..1338
/gene="HAM2"
/locus_tag="AT5G09740"
/gene_synonym="F17I14.70; F17I14_70; HAC11; HAG05; HAG5;
HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 11; HISTONE
ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 5; histone
acetyltransferase of the MYST family 2"
/note="Encodes an enzyme with histone acetyltransferase
activity. HAM2 primarily acetylate histone H4, but also
display some ability to acetylate H3. Prior acetylation of
lysine 5 on histone H4 reduces radioactive acetylation by
either HAM2."
/db_xref="Araport:AT5G09740"
/db_xref="GeneID:830834"
/db_xref="TAIR:AT5G09740"
CDS 46..1149
/gene="HAM2"
/locus_tag="AT5G09740"
/gene_synonym="F17I14.70; F17I14_70; HAC11; HAG05; HAG5;
HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 11; HISTONE
ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 5; histone
acetyltransferase of the MYST family 2"
/inference="Similar to RNA sequence,
EST:INSD:BP821081.1,INSD:EH881937.1,INSD:EL094133.1,
INSD:BP655882.1,INSD:AU229018.1,INSD:CK118918.1,
INSD:BP627140.1,INSD:DR349537.1,INSD:AU237909.1,
INSD:DR382043.1,INSD:BP853922.1,INSD:DR749556.1,
INSD:BP646748.1,INSD:BP623873.1,INSD:BP800315.1,
INSD:EL253858.1,INSD:EL281878.1,INSD:EL278862.1"
/note="histone acetyltransferase of the MYST family 2
(HAM2); FUNCTIONS IN: histone acetyltransferase activity,
zinc ion binding, nucleic acid binding; INVOLVED IN:
chromatin assembly or disassembly, regulation of
transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Winged helix-turn-helix transcription
repressor DNA-binding (InterPro:IPR011991), Chromo domain
(InterPro:IPR000953), Acyl-CoA N-acyltransferase
(InterPro:IPR016181), MOZ/SAS-like protein
(InterPro:IPR002717); BEST Arabidopsis thaliana protein
match is: histone acetyltransferase of the MYST family 1
(TAIR:AT5G64610.1); Has 1870 Blast hits to 1533 proteins
in 232 species: Archae - 0; Bacteria - 4; Metazoa - 1014;
Fungi - 461; Plants - 151; Viruses - 0; Other Eukaryotes -
240 (source: NCBI BLink)."
/codon_start=1
/product="histone acetyltransferase of the MYST family 2"
/protein_id="NP_001078558.1"
/db_xref="GeneID:830834"
/db_xref="TAIR:AT5G09740"
/db_xref="Araport:AT5G09740"
/translation="MGSSANTETNGNAPPPSSNQKPPATNGVDGSHPPPPPLTPDQAI
IESDPSKKRKMGMLPLEVGTRVMCRWRDGKHHPVKVIERRRIHNGGQNDYEYYVHYTE
FNRRLDEWTQLDQLDLDSVECAVDEKVEDKVTSLKMTRHQKRKIDETHIEGHEELDAA
SLREHEEFTKVKNKVYAQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGY
FSKEKHSEEAYNLACILTLPSYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLL
SYRGYWTRVLLEILKKHKGNISIKELSDVTAIKAEDILSTLQSLELIQYRKGQHVICA
DPKVLDRHLKAAGRGGLDVDASKLIWTPYKDQS"
ORIGIN
1 tatgagaaag aaagcccacc cgggaatctc cgacccgacc gagaaatggg atcgtcagcg
61 aatacagaaa ccaacggcaa cgcaccgcca ccgtcgtcga atcaaaagcc tccggctacg
121 aacggcgttg atgggtctca tcctcctcct cctcctttaa ctcctgatca agctattata
181 gagtcggatc cgtcgaagaa gaggaaaatg gggatgcttc ctctagaagt gggtactcgt
241 gtgatgtgtc ggtggagaga cgggaaacac catccggtga aagtaattga gcgccggcgg
301 atacataacg gcggtcaaaa tgattacgag tattacgttc attacactga gtttaatagg
361 aggctggatg aatggactca gctggaccaa ctggaccttg attcagtaga gtgcgctgta
421 gatgaaaaag tggaagacaa ggtaacaagc ttgaagatga cacgtcacca gaagaggaag
481 atcgatgaga cacatataga gggtcatgaa gagctggatg cagcaagttt gcgtgaacat
541 gaagagttca cgaaagtgaa gaacaaggtt tatgcacaga atctctgcta cctggcaaag
601 ttatttcttg accacaaaac tctttactac gatgttgatt tgtttctatt ctacgttctt
661 tgcgaatgtg atgaccgagg atgccacatg gttgggtact tttcaaagga gaagcattcg
721 gaagaagcat acaacttagc ttgcattcta accctgcctt catatcaaag aaaaggctat
781 ggaaagttct taatagcctt ttcctatgaa ctgtcaaaga aagagggaaa agttgggaca
841 ccggaaagac ccttgtcgga tctaggctta ctaagctaca gaggttattg gactcgtgtt
901 ctattagaaa tcttgaaaaa acataaggga aacatttcta tcaaggagct gagcgacgtg
961 acagcaatca aagcggaaga tatattaagc acacttcaga gcctagaact gatacagtac
1021 aggaaaggac agcatgtgat ctgtgcggat ccaaaggttc tggaccgaca tctgaaagct
1081 gcaggccgag gtggtcttga tgtagatgct agcaaactga tttggacacc ttacaaggac
1141 cagagttaag agtaagtaca ctcctcttgt gccattggat ttgatttgag tgtgtaagta
1201 aagcgggctg tcttattctc ctgaaatgta agtgtacttt acttgtaaat gttgaaatcg
1261 tacttggaat ggtgtttgtt tacaactctt ataatgagga aatttgaagc aatttcatag
1321 gtccatcttt cttttgct
//