Dbfetch
LOCUS NM_001038920 3446 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster nuclear fallout (nuf), transcript variant C, mRNA. ACCESSION NM_001038920 VERSION NM_001038920.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3446) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3446) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3446) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3446) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3446) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3446) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3446) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3446) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3446) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3446) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3446) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3446) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3446) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3446) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3446) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3446) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3446) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3446) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3446) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3446) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3446) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3446) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3446) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3446) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3446) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On May 8, 2012 this sequence version replaced NM_001038920.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3446 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3446 /gene="nuf" /locus_tag="Dmel_CG33991" /gene_synonym="anon-D2; CG32140; CG33991; CG3779; CG7867; CIP-D2; Cy3-23; D2; Dmel\CG33991; EP3077; FIP3; Nuf; NUF; Nuf1; Nuf2p" /note="nuclear fallout" /map="70D3-70D4" /db_xref="FLYBASE:FBgn0013718" /db_xref="GeneID:39572" CDS 743..2251 /gene="nuf" /locus_tag="Dmel_CG33991" /gene_synonym="anon-D2; CG32140; CG33991; CG3779; CG7867; CIP-D2; Cy3-23; D2; Dmel\CG33991; EP3077; FIP3; Nuf; NUF; Nuf1; Nuf2p" /note="CG33991 gene product from transcript CG33991-RC; CG33991-PC; nuf-PC; nuclear-fallout; corkscrew interacting Protein-D2; nuclear fallout" /codon_start=1 /product="nuclear fallout, isoform C" /protein_id="NP_001034009.1" /db_xref="FLYBASE:FBpp0075475" /db_xref="GeneID:39572" /db_xref="FLYBASE:FBgn0013718" /translation="MAPMPRIQLPNGNSSIKASTNDFLFAETMSGDSSPTPSSPPSST AGVAKSQCSSLSDGESFEGYGENEYPTQLREARSSNSNGSHNMSNHINNNSNISVGNN SGHNHSGHSNDGNNNLNGSTGVELDLAPHVGSSTPQDDDELNIMPRDNWARRSLRRTP TSSGRRQISSNALASQLYRSSSFNSSGRSSNCDTTEDMYSDISLENRHDYDYRLELLQ RKVDDLSDTQNIAEDRTTRTKTEYAVLQARYHMLEEQYRESELRAEERLAEEQKRHRE ILARVEREASLQNENCQMKIRATEIEATALREEAARLRVLCDKQANDLHRTEEQLELA RDQIGVLQQEHEEQAQALRRHEQEKKSTEELMLELGRELQRAREESGARAMPTTSPES IRLEELHQELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVEQGRHLLNGTLNSLA QELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNIVENYPQLLEVKPMERK" ORIGIN 1 gcgatttcgg tcgtcgaatt tagtttgaag cggacgcatc gtcgggctgg catatatcga 61 aactgcaatt gcattttttt aatattttta ctcgtaatca agcgttagtt gttgctgcgc 121 gcgtgaagtc gaattgtata gaagtatcgg aaaacgacat tatttaaaac cattaggaat 181 atacaattgg actttggcgt tttattactt ttacatattt tcgatagcgc gcgcggtgat 241 atttcccacg taaaaccacc aaatcacaac acagctcaaa aaataagtta aagacgttgc 301 caacgttacg cacgcgtaca aatacaattt accaataaaa aatgcagcta taagtgcttt 361 gatatgcgaa gaatgctgaa ttaagtgaaa gtgtaagaaa atcgaataaa acacaataaa 421 caaagccgat tttaggcaat attcggctca actacctgtt ctgcaacaaa tacataaaca 481 gaaacaacaa caacaccgag atccaactgt tgcgcttcgc cggctatctt cgtctccctc 541 tctccttaga ctgcgcgcgt gtgtgtgtgt gttcctgtat tttcaccatt cagttgttgt 601 tgtggctttt cgccaagtgc aaataattcg tttttttttg tttttaacca aattcatgtt 661 cagctaacgg ttaaagccac tcgtctgctc caattggata cgcaaatata tttcaacagc 721 tgcagtaagc tttccaccaa acatggcacc aatgccccga attcagttac ccaatggaaa 781 ttcttccata aaggctagca caaatgattt tctctttgcg gaaacaatgt ccggcgacag 841 tagtcccacc cccagcagtc cgccatccag tacagcaggc gttgccaaat ctcagtgttc 901 ttccctttcg gatggcgaat cctttgaggg atatggcgaa aatgagtatc ccacccaact 961 tcgcgaagcc cgcagctcca attccaatgg gagccataat atgagcaatc atattaacaa 1021 taattctaat atcagcgtgg gcaacaacag tggacacaac cacagtggac actcgaacga 1081 tggaaataac aacctaaatg gcagcactgg cgtcgaactc gatttggctc cacacgtcgg 1141 ctcatcaaca cctcaagatg atgacgaact aaacataatg ccccgggata attgggccag 1201 gcgcagtctg cgacgaactc ccaccagttc cggccgcagg caaattagtt caaatgcctt 1261 agccagccaa ctctatagat catcgagctt taactcatcg ggccgtagct ccaactgtga 1321 tacaacagaa gacatgtaca gcgacataag cttggagaat cgtcatgact acgattatag 1381 gctggaactg ctgcagcgca aggtggacga tctgtcagat acacagaata tagctgagga 1441 tcggacaacc cgcaccaaga ccgaatatgc agtccttcag gcgcgttatc acatgctcga 1501 agagcagtac cgagagtcgg aactgcgtgc cgaggagcgt ttggcagagg agcagaagcg 1561 gcaccgcgag attttggccc gcgtggagcg tgaagcctcg ctgcagaacg agaactgcca 1621 gatgaagatc cgtgccaccg agatcgaggc aacggcactg cgggaagaag ccgcccgact 1681 gcgtgtcctg tgtgacaagc aggccaatga cctccatcgc accgaggaac agttggagct 1741 ggcgcgcgac caaatcggcg tcctgcaaca ggagcacgag gagcaggcac aggcactgcg 1801 ccgccacgaa caggagaaga agtccaccga ggagctgatg ctggagctgg gccgggaact 1861 gcagcgtgct cgcgaggaga gtggagcccg ggcaatgccg accacatcgc cggagagcat 1921 aagactggag gagctgcatc aggagctcga ggagatgcgc cagaagaacc gaaccctcga 1981 agaacagaac gaggagctgc aggccacgat gctgaccaac caggccacca tgctgacaaa 2041 tggcgtggag cagggtcgcc atctgctgaa cggaacactc aacagtttgg ctcaggagct 2101 cgaggagatg tcacaagccc agctacaaca ggccttccag gaaaaggagg atgaaaatgt 2161 tcggcttaag cactatattg ataccattct actcaacatc gtggagaact atcctcaatt 2221 gctggaagtc aagcccatgg agcgaaagta gtgcagtcta ctggaagaat aaaccaaccc 2281 taggcactcg gcagagtgtc acaaccacct aacattacct aaaattaata aactaactaa 2341 accatactct atgttaactt tttaagctac actctataca tgtatttatg cctaacttaa 2401 gtcataattt attttataac aatttaatgt agatttttaa accaaaacaa cgcagagaac 2461 acaaagattg catgtcaaaa tgataaaaaa gtccttaatt tgattagatt atgttttgta 2521 taaagagagt ccaaaattat gtaaaagttt attttccttc gtttctagtt tgcgttttgt 2581 atagttcgtg ttgttgatcc ataaagatat tacttataaa tattgttaga ttttaagtcg 2641 taaaaaatct ttcacttatt aatgaaatgg aacccaataa tttattgata attgccagaa 2701 aatctaattg tgaatgtgta tagcataaag agattttatg aactgttgat gcttgacagg 2761 aaatatttcc aatttcgtca tggcagctaa gaaggttttt gctaggacaa gtgctccatt 2821 tttcaaatct ttccatcaca tgcatacttc ttaaatcttt ctatccatat tttgcactct 2881 ccgaaaagat cttccctagt ttgcctgtaa tgtagttaca aaaatctatc aaaaaatttg 2941 cgtttatggt atggacaatc ccaggataca aagacggagt tttagtttga tgtgagtcta 3001 aatgagagca attatcacga ggagtttatc aattcagaag ttatatctta atccacacac 3061 atatgtcaat gtatagcaca gataaaacta atcttactct gcatataaaa caacattaaa 3121 tggacataat gtgcaaacgt ttagggatga cacatgatag ctccaacgaa agcgatccct 3181 aatagtctta gcaactgaat aactcaagcg gtcaacccta atttagctat aataatatcc 3241 aagaaaactc gataatcgat gtgtaatcgt taatcaaaat tttattgcct taaacggatg 3301 ttttaaaaaa tgtactaagg cttagataac tctaacaaaa aagtccataa ggtttaatga 3361 catgctgcga aatatggaat tttaaatgta atttactaga tgcaagtcgc tgaacttata 3421 tcaaaataaa aagaagaata ttttat //