Dbfetch
LOCUS NM_001038770 2919 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster centriolar coiled coil protein 110kDa, transcript variant E (Cp110), mRNA. ACCESSION NM_001038770 VERSION NM_001038770.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2919) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2919) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2919) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2919) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2919) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2919) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2919) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2919) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2919) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2919) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2919) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2919) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2919) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2919) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2919) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2919) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2919) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2919) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2919) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2919) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2919) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2919) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2919) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_001038770.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2919 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2919 /gene="Cp110" /locus_tag="Dmel_CG14617" /gene_synonym="CG14617; CG32501; CP110; DCP110; Dmel\CG14617" /note="Centriolar coiled coil protein 110kDa" /map="20C1-20C1" /db_xref="FLYBASE:FBgn0031191" /db_xref="GeneID:33136" CDS 343..1992 /gene="Cp110" /locus_tag="Dmel_CG14617" /gene_synonym="CG14617; CG32501; CP110; DCP110; Dmel\CG14617" /note="CG14617 gene product from transcript CG14617-RE; CG14617-PE; Cp110-PE" /codon_start=1 /product="centriolar coiled coil protein 110kDa, isoform E" /protein_id="NP_001033859.1" /db_xref="FLYBASE:FBpp0100113" /db_xref="GeneID:33136" /db_xref="FLYBASE:FBgn0031191" /translation="MDATWAMEQLLSAVEMGGSHSEATTPTATTTISIWSAPSEGSGS SSMDPVSFRFHLDGQPILPPLMTSAKKREVQLARQMAEALEKRYRLARHSAGSDMASR RSVSQLQQTETLIYDSTRGQARPQTLVFGKQLPTIQVDPPTPQPFVKSIENTSPRRHN RITDRILQFEQSGLGKLLPKVPDKCILRTSPAVAEDQQDQDTKDTTARELGSPLAEPA NFQRSRSFTLEEPSQVLVEHMEREALAVKPSQSLANFEKQTIESQAKRVNRSARSISS KISHNSYNSNSSAATKSTIATKTTTAGSSCSRRDREVERIIERALDEHGALEASRKAG VRNYLRGHRERMNQLVIHQEKERRRMQAEFDHQQRQLIEELCAEIDVSSATENPDSLI SQSTSTGDLQRFSPSPTLPSFSEDIEDFPTMEDKCQIAGPSSARKRLFSPKPSKDSEP QLLSAPSTPRSLPLRNSSLTNSRRSVQVVRRRSQSVGGSLVKTITAADREVKKSPAKP GGGAGRPKSSPGKNSSIIAKRGSAPPKSASPTKRLGNRKKP" ORIGIN 1 gtgtgagttt tgaattgccg tttgaaaata aatgttttcc ccagcattaa agcagcattt 61 ctcattggct cttgatggta gctgcgatcc acggtagaaa cattgaatac aaaactctca 121 acgattcggg atatcatttg attgatgtaa tgaactcttc agaggtttcc taatttttgg 181 cgggaagtcg agggctccct agtgccatcg tcatctctaa tggcaactaa aacatagcag 241 acatttaatg aactttcaca aaacacctag attcagctga cctctgagaa ggcttcctga 301 catttcgacg tcccaacaaa aattcccagt agcaaaacac caatggatgc gacgtgggca 361 atggagcagc tgctgtctgc agttgagatg ggaggtagcc acagcgaggc caccacacca 421 acggccacga ccaccatatc gatctggagc gccccctccg agggcagtgg ctctagttcc 481 atggaccctg tctcctttcg gttccacttg gacgggcagc ctatactgcc accgctgatg 541 acgagcgcca agaagcgcga ggtgcagctg gcccgccaga tggcagaagc gctggagaag 601 cggtaccgcc tggccagaca ctcggcggga tccgacatgg ccagtaggag aagtgtgtca 661 cagctgcagc agacagaaac gttaatctat gacagcacac ggggccaggc tcgtcctcag 721 actctggtct ttggcaaaca gttgcccacc atacaggtgg atcctcccac gcctcaacca 781 tttgtgaaat caatagaaaa cacttcccca aggcggcata atcgcattac cgatcgtatc 841 ctgcagttcg agcagtcggg actgggtaag ctgctgccca aagttccaga taagtgtatc 901 ctgcgcacaa gtcctgcggt agccgaagac cagcaggatc aggatacaaa ggacacaacg 961 gcaagggagc tcggcagtcc actggcagaa ccagctaatt ttcagcgttc gagaagtttc 1021 acactagagg agccctccca ggttctcgtg gagcacatgg agagggaggc cctggctgtg 1081 aaacccagcc agagtttggc caacttcgag aagcagacca tcgagtctca ggccaagcgg 1141 gtgaaccgta gtgcaaggag tattagcagc aaaattagcc acaacagcta caatagcaac 1201 agtagcgccg caaccaagag caccatcgcc actaaaacca caaccgccgg cagcagctgt 1261 tctaggcggg atcgcgaggt ggagcgtata atagaacggg cgctggacga gcatggcgct 1321 ttggaagcca gccgcaaggc aggagtgcgc aactatctgc gtggccatcg ggagcgaatg 1381 aatcaattgg tcattcacca ggagaaggaa cgtcgtcgca tgcaggccga gtttgatcat 1441 cagcagcgtc agctcataga ggaactgtgt gccgaaattg atgtttcctc ggccaccgaa 1501 aatcctgaca gtctgatatc gcaaagcacc agtacgggag acctgcagcg tttttccccc 1561 tcgcctacgt taccctcctt ttcagaggac atagaagact ttccgacgat ggaagacaag 1621 tgccaaattg cggggccttc ttccgctcgc aagaggctgt ttagtccaaa accatcaaag 1681 gactcggaac cgcagctgct cagtgccccc agcacaccgc gatcgttgcc cctccggaac 1741 agcagcttaa ccaatagcag acgaagtgtc caagttgtcc ggcgccgatc gcaatctgtg 1801 ggcggtagtc tagtaaaaac aatcaccgca gcagaccgcg aggtgaagaa atcgccagcg 1861 aagcctggag gtggagcagg acgaccgaaa agttccccgg gaaaaaatag ctccattata 1921 gcgaaaaggg gaagcgcccc accaaaaagc gcctcaccga ccaagcggct gggcaatcgc 1981 aagaagccct agcaattcgg gtagtcagtt atgcaagtgc cttaacaaag actgcgagga 2041 aatcgaggga ccaagcctct agcaccagta gctaacctaa ttactaaccc aactagcaag 2101 tgccttcgtt ccctgtttaa tttcgcctct aatccctgcc agaaatatgt cgagctgaaa 2161 caggaagagc gccagtgggc ggccacacgt attaatgccg gtgtgcgagg atttttggtc 2221 cgccggcttt ttgcaaccga gcaagtgcag cgcattgtcc aaaccatcag agacaccctg 2281 atcttcgtgt tgaacctgca cctggaaact tgtggacatg gcctggatgc agaggagcct 2341 gcaaacttgc gcctcaaggc gcgattgctt caacagctct gctccgccag tcgtaccctg 2401 cacctgatct tcttccagac caacataaag gaccgcatgg agatcatcgc tcgggatcgc 2461 cagaggatca agaccaaact actcctcaaa catcgccgat tggattagga tttcatagaa 2521 cagctgtttg gcaaaagccc gcgtgatttt ttgcagccaa gctttcaaga cattgcggag 2581 ctttctagac aaattcgccc tgaaagctgc ggcggattgc caaaacaaac ggaactttta 2641 aagcgagtag tcgtgtgtgc gtgtgatggc cttaaaagaa aacagcaaag gcagacaaat 2701 aatcaaaagc gagagaaaac tagtttaata acaattaatt attagtgagc acgtaaccca 2761 cagcaattgg ccgacctccc gctcatcctg ttattcaccc agctgcccgc gtgccttgcc 2821 cacccaattc cataattccg ccggcggcga atttagaacg acacaccaaa ttgaaaaaat 2881 aataatacaa ataataaaac cacaccaata acagatttc //