Dbfetch
LOCUS NM_001028379 7113 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Calponin-homology (CH) domain-containing protein (fln-1), partial mRNA. ACCESSION NM_001028379 VERSION NM_001028379.5 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 7113) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 7113) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 7113) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 7113) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003282). On Apr 15, 2020 this sequence version replaced NM_001028379.4. COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..7113 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="IV" gene <1..7113 /gene="fln-1" /locus_tag="CELE_Y66H1B.2" /db_xref="GeneID:176855" /db_xref="WormBase:WBGene00022048" CDS 1..6768 /gene="fln-1" /locus_tag="CELE_Y66H1B.2" /standard_name="Y66H1B.2a" /note="Confirmed by transcript evidence" /codon_start=1 /product="Calponin-homology (CH) domain-containing protein" /protein_id="NP_001023550.2" /db_xref="EnsemblGenomes-Gn:WBGene00022048" /db_xref="EnsemblGenomes-Tr:Y66H1B.2a" /db_xref="GeneID:176855" /db_xref="GOA:D0IMZ5" /db_xref="InterPro:IPR001298" /db_xref="InterPro:IPR001715" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR014756" /db_xref="InterPro:IPR017868" /db_xref="InterPro:IPR036872" /db_xref="UniProtKB/TrEMBL:D0IMZ5" /db_xref="WormBase:WBGene00022048" /translation="MAQPKRLDQEEEVVPAIRHDDAEWKIIQQNTFTRWVKNHLQKAG ETIESLETDFSDGLKLIALAQVLSHKNVGKFNKKVAFRSQKLENVSLALNFFQNEENI KIINIDSTHIVDHNKKLILGLVWTLILHYSISMGWIQEKREDGDNKEETPKQKLLNWI RNRLPGMPISNFTSDWNDGVALGALVNSMAPGALEDWENWSPNDALENTEKAMKSAQD LLKVAPLIAPAEMIHPEIDEMSVMTYLSQFPATKPIIMKPKVQATISNLDKILQVNDP REFDLKLSRDGFKPKVSIRDEDGQDIHLSLKKVEDKENAYKVKFTPTKIGFIHVDVAA NDVHTFETQTIPEASVICQVVPIARLLDYNKTAKVGDDVKFAVVDAIEGPVEAIVVDP TGKEHRMVILDGTSPGEHSFEYKIPCIGLHSVNVFHKKLPLTGSPFPLRGKPKNSFKV WGRGIAPEGIRKNDVVGVHVESLDPEENIANANISLEVLKPSDGSHLPVSVGYNDESQ SMDFEYSPKQAPDDLEVLVKVAGEVIESHKIHVAPESSSKIRAFGAGLEGGIVNEPCV FDVEMNGESKDLSFAVEGPSKAEIGCQERPDGSAILSYTPTVAGVYKVGVLADGKHIQ DSPFVLRVTEPIEGLKPSATRVTGIDESKVYNVGEKIPFRVDTRLCGVDLVPKVEILD PELNPISYGAREITPGLFEYTLIPDAPIKHKIDVSVAGVSVPGAPFSVKVKEPTDASK LKIFGPGVDGPVYSKEPTRFTIDATQAGPGAVEVALRDDQGENVDLDVLDNQDGSFTV KYTAQRPGAYQLNVVFAGEEISPIEINVKPNVDVSGIRVEGLENENLLIGSHLRPTIN IGKLEPKSKGLQLIDEVNGKRYNVPMKINPDGTYSTDTPLMEVGEHKLQLLFDEIPVK EAVVEVIKGTDVNKCKAYGPGLEQAVVGEKAVFELDLDGAGEGALSMEMRGPAKAESR IQDRGNGKCSVEYVAKAPGDYEMAIKFGKDEQKEHVKGSPFKAVVDYKKDPSQITISG LDQPNYRLNQPINFVIDTSKTKDLPVKATVPSDFAQLQPVVSRSPSNPRHHNVRFVPS GKPNVSIPIEIIYDGLKIDEKLVKVLPEVEPQLIKILHDKKKDSLTTTPITTNASHEG HVPFDVRDCGNVKKIESRVFGPDGKERLNHVRSTEQNGIYDVSFPTDMAGEYCVVFYI NGQEVAARVPVMAEKIGRKEDVIKEEIVFHPEIAEHSPTVLTYNHPIDAKKKKAHPAI QVLAAKPDAVRLEHIQELVDNGHRVADRIVFTATKLGTNTLDVFYGGEHVDHVEYEAI GKLEYERIQAERAKVVVEKEDDVDKYEKQYKDEPSSAPADPRVAPTNGKEPTTAQESK KNGNQQKLAPSAEIEHKPLEKYFTFNVRDLGYQPKDLEAIVMPPTQKKEVAEIIDNLD GTILVKYTPKVHGSHELSILQNGAQLQGTPIKFYVDAYGDGWATVYGPGLQNAVVGEP ATFTVCAKGSQAKELSVSIEGPAKSQIKIHDNKDGTCSAAWVPPVPGEYKVHVKLGGK AVKDSPFRVLVMGEGQKRSHLSVGSTSEVALPITQQELKGISASIKSPGGIEEPCFVR LLDGGRLGVSFTPREAGEHLITVKRDGKLVPKAPFKIKVDKTQVGDASKVEVSGSGKA KGITLQANELLVDTSKAGYGGLSVSVQGPSKAELTCKEVKSGLIKVLYTPTEPGVYAI AIKFADHHVKDSPLTVQCTGKSAGRVIQTIQKDVEQHGICLPDQESHLFLKLLNTSPM DITARLMDPKGHTDDIEMRDLGQQYYQLKFTPKMEGIHTLSVMYKDAHVNGSPFQFTV GSFSEGGAHKVRAAGQGVVRGETGTFNAFNIYHREAGVGAVAVTIEGPSKATLEFKDH NDGNCHVDYKVATPGEYVVAVKFNDQHIPDSPFKVYIAPATGEVRKLELAQFHGQGIP AGKAFTFTVLTHRAKGHLEAKVVTPNNEVDTIDIVPIEDGESYAMRFVPKETGNHFIH VTLDGAPMRESPFRLRVGGKDLCDPTAISASGDGLVKGTTGQKCEFVINTANAGAGIL TVQMDGPSKATLDAYELEKGYKVRYTPLAPGSYFASVKYNGIHAPGSPFKIPVEGKEL GGNGYNETSHVKIDAVAKTSKGTVAVVPEYQGDAAKVTAKGAGLNKFFPGRPAAFQID TGLAGTNLLMVGVVTTKGPCEEVVVRHQGSGHYVCSYRIPDRVKGFVFIKYGDKEIPG SPFAIEP" ORIGIN 1 atggcgcaac caaaacgcct tgaccaggaa gaagaggtcg ttccggcgat ccgtcacgat 61 gacgccgaat ggaagatcat ccaacagaat acattcacca gatgggtcaa aaatcatttg 121 caaaaggctg gagaaactat tgagagtctg gaaactgatt tctcggatgg tctcaagctt 181 attgcattgg ctcaagttct ctcccacaag aatgttggaa aattcaacaa gaaagtggca 241 tttcgttcac agaagctcga aaatgtgtct cttgcgttga atttcttcca gaatgaagag 301 aatattaaga ttatcaatat tgacagtact catattgtgg atcataacaa gaaattgatt 361 ctgggactcg tttggacatt gattctccat tattcaattt cgatgggatg gattcaagaa 421 aaaagagaag atggagataa taaggaggag actccgaagc aaaagctcct caattggatt 481 cgtaatcgtc ttccaggaat gccgatttcc aacttcactt ccgactggaa cgacggagtt 541 gctctcggtg cacttgtcaa ttcgatggct ccaggagcac ttgaagactg ggaaaattgg 601 tcgccaaatg atgctctgga gaacactgag aaagccatga agtctgctca agatttgctt 661 aaagttgctc cactcattgc tccagctgag atgattcatc cggaaattga tgaaatgtct 721 gtaatgacat atctttcaca gttccctgca acaaaaccaa taataatgaa gccaaaggtt 781 caagcgacta tttcaaattt ggacaaaatt ctccaagtca atgatcctag agagtttgat 841 ttgaagcttt ctcgtgatgg atttaagccg aaagtctcga tccgagatga agatggacag 901 gatattcatt tgagtcttaa aaaggttgag gataaagaaa acgcctacaa agtcaagttc 961 actcctacaa agattggatt tatccacgtg gatgtagccg cgaacgatgt tcacacgttt 1021 gagactcaga ccattcctga ggctagcgtc atttgtcagg ttgttccaat cgcccgcctt 1081 ctcgattata acaaaaccgc caaagtcgga gatgacgtca aattcgccgt ggtcgacgcc 1141 attgaaggtc ctgttgaagc aattgttgtt gatccaactg gaaaagagca ccgaatggtt 1201 atcttggatg gtacatcacc aggagaacat tcattcgaat acaaaattcc gtgtattgga 1261 ctacattcag tcaatgtttt ccacaagaag ctcccattga ccggatcgcc attcccactg 1321 cgtggaaaac caaagaattc gttcaaagtg tggggacgtg gaattgctcc agaaggaatt 1381 cgcaaaaatg atgtcgttgg tgtccacgtt gaatcgttgg atccggaaga aaatatcgcc 1441 aacgcaaaca tttctttgga agtgttgaaa ccgtcggatg gttctcatct accagtttca 1501 gttggctaca atgacgaatc tcagtcaatg gatttcgaat attcgccaaa gcaagcacct 1561 gatgatctag aagtactcgt taaggttgct ggtgaagtca tcgaatctca taagatccat 1621 gtggcaccgg aaagctcttc gaagatcaga gcattcggag caggacttga aggcggaatt 1681 gtaaatgagc catgcgtgtt tgatgtggaa atgaatggag aatcaaaaga tctatcattt 1741 gctgttgaag gaccatcgaa agcggaaatc ggatgtcaag agagaccaga tggtagtgct 1801 attctatcct atacaccaac tgtggctgga gtttacaaag ttggggtgct agccgacgga 1861 aagcatattc aggattcgcc gtttgttctg cgtgtcactg aaccaatcga aggcctaaaa 1921 ccatcagcaa ctcgagtcac tggtattgat gaatcgaagg tgtacaacgt tggtgagaag 1981 attccattcc gtgttgatac tcgtctttgt ggagttgatt tggtgccgaa agtggagatt 2041 ttggatccag aactcaatcc aatcagttat ggagctcgtg agattactcc aggattgttt 2101 gagtatacat tgattcccga cgcgccaatt aagcacaaga ttgatgtcag tgttgctgga 2161 gtttcagttc caggagctcc gttctctgtc aaagtgaaag aaccaactga tgcttcaaaa 2221 ctgaagattt tcggacctgg agtcgatgga cctgtgtatt ccaaagaacc aacaagattc 2281 acaattgatg ccacacaagc cggaccagga gctgtagaag ttgcattgag agacgatcaa 2341 ggagaaaatg tcgatttgga tgttttggat aatcaagatg gatcgttcac tgtcaagtat 2401 actgctcaga gaccaggagc gtatcagctg aatgtggttt tcgctggtga agaaatttcg 2461 ccaattgaga tcaacgtaaa accgaacgtg gatgtttctg gaattcgggt cgagggactc 2521 gagaatgaga atttgctcat cggatctcac ctccgcccga ctatcaacat tggtaaactg 2581 gagccaaaat caaaaggact tcagctgatt gatgaagtga acggaaaacg atacaatgtt 2641 ccaatgaaaa taaatccaga tggaacatat tcgactgata ctccattgat ggaagttgga 2701 gagcataagc ttcagctttt gttcgacgaa attccagtta aagaggctgt tgtagaggtt 2761 atcaaaggaa cagatgttaa taagtgtaaa gcttatggac ctggattgga gcaagctgtt 2821 gttggtgaaa aggctgtatt cgagctggat ttggatggag ccggagaagg agctctgagc 2881 atggaaatgc gtggaccagc taaagccgaa tcgagaattc aggatcgtgg aaacggaaag 2941 tgcagcgtcg aatatgtggc taaagctcca ggagactatg agatggcaat caaattcggc 3001 aaagatgagc agaaagagca tgtgaaagga agtccattca aggctgtcgt tgactacaaa 3061 aaggatcctt cacagatcac catctccgga ttggatcaac cgaattatcg tctcaatcag 3121 ccaatcaatt tcgtgattga cacatcgaag actaaagacc ttccagttaa agctaccgtt 3181 ccaagtgatt tcgcccagct tcaaccagtc gtctctagat ctccgtcaaa cccacgtcat 3241 cataatgtga gattcgtgcc aagtggaaaa ccgaatgtct cgattccaat cgaaatcatc 3301 tatgatggat tgaaaattga cgaaaaattg gttaaagtgt tgccagaggt cgagccgcaa 3361 cttatcaaga ttcttcacga caagaagaag gattcgttga caaccactcc catcacaacc 3421 aatgcatcac atgaagggca tgttccattt gacgtccgcg attgtggaaa tgtcaagaaa 3481 atcgagtcac gagtctttgg acctgatgga aaagaacgtc tgaatcatgt tagaagcact 3541 gaacaaaatg gtatctatga tgtctcattt ccaactgata tggctggtga atactgtgtt 3601 gtgttctaca taaatggaca agaagtcgcc gcaagagttc cagtgatggc tgagaaaatc 3661 ggtcgaaaag aggatgtgat caaggaggaa atcgttttcc atccagaaat tgctgaacat 3721 tctccaactg tactcactta taatcatcca attgacgcca agaaaaagaa ggctcatcca 3781 gcgattcaag tgcttgccgc gaaaccagat gctgttcgtt tggagcatat ccaggaacta 3841 gtcgataatg gacatcgagt tgctgatcgc attgtgttca cagctaccaa gttgggaacc 3901 aatacactgg atgtgtttta tggaggagaa catgtcgatc atgttgagta tgaggccatc 3961 ggaaagctcg aatacgagcg aattcaagcg gaacgcgcca aagtcgttgt cgagaaggaa 4021 gacgacgtcg acaaatacga gaaacagtac aaggacgaac cctcctcagc tccagcagat 4081 ccacgagttg caccgaccaa cggaaaagag ccaacaactg ctcaggaatc gaagaaaaac 4141 gggaatcaac aaaaacttgc tccctctgcg gaaatcgagc acaagccgtt ggaaaagtac 4201 ttcactttca acgttcgtga tttgggatat caaccaaagg atcttgaagc tatcgtaatg 4261 ccaccaactc agaagaaaga agtcgccgag attatcgaca atcttgatgg aaccatcttg 4321 gtcaagtata caccaaaagt tcacggatct catgagctct caattctcca aaatggtgct 4381 caacttcaag gaactccaat aaagttctac gtggatgctt atggagatgg atgggcaact 4441 gtttatggac cagggcttca gaacgctgtt gtcggagaac cagcaacatt caccgtctgt 4501 gccaagggat cccaggctaa agagctctcc gttagcattg aaggaccggc caaatcgcaa 4561 atcaagatcc atgacaacaa ggacggaaca tgctcggctg cgtgggttcc accggttcca 4621 ggagagtaca aagttcatgt gaagttgggt ggaaaggcag ttaaggattc tccgttccga 4681 gtgcttgtta tgggagaggg acagaaacgc tcccatctct ccgtcggatc gacatcagaa 4741 gtggctcttc caattactca acaagagctc aaaggaattt cagcttccat caagtcaccc 4801 ggaggtatcg aagaaccttg ttttgtccgt cttttggatg gtggacgact cggagtttcg 4861 ttcacaccac gtgaagctgg agagcatttg atcactgtca aaagagatgg aaagcttgtt 4921 ccaaaggctc ctttcaagat caaagttgat aaaactcaag ttggagatgc ttccaaggtc 4981 gaggtatctg gttcaggaaa ggccaagggt atcactcttc aagccaatga gcttctcgtc 5041 gatacatcga aagccggata cggaggactg tcagtttctg tccaaggacc atcgaaggct 5101 gagctcactt gcaaggaagt gaagtcagga ctcataaagg tgttgtacac tccaacagaa 5161 ccaggagtct acgcgattgc catcaaattc gctgatcatc acgtgaaaga ctcaccattg 5221 actgttcaat gcaccggaaa gtctgcaggt cgagtaattc aaaccatcca aaaagatgtt 5281 gaacaacacg gaatatgctt gccagatcaa gaatctcact tgttcttgaa gttgttgaat 5341 acatcaccaa tggatatcac cgctcgtctc atggatccaa agggacacac tgatgacatt 5401 gaaatgagag atttgggaca acaatactat caattgaagt tcactccaaa aatggaagga 5461 attcatactc tttctgtcat gtacaaggat gctcatgtta atggatcacc attccaattc 5521 actgttggtt cattctctga aggaggagct cataaggtac gtgccgctgg tcaaggagtc 5581 gtccgtggtg agactggaac tttcaacgcc ttcaacattt atcaccgtga agctggagtc 5641 ggtgcggtcg ctgttacaat cgagggtcca tcgaaggcga cactggagtt taaggatcac 5701 aatgatggaa attgtcacgt ggattacaag gtggctacac cgggagagta cgtggtggct 5761 gtgaagttca acgatcagca cattccggat tcaccattca aagtgtacat cgcaccggcc 5821 actggagaag tcagaaaact cgaattggct caattccacg gacagggaat tcctgctgga 5881 aaggctttca cgttcactgt cctcactcac cgagccaagg gacatttgga ggcaaaagtt 5941 gtgacaccga ataacgaggt tgacacaatt gacattgttc cgattgaaga tggagagagc 6001 tatgcgatga gatttgttcc aaaggaaact ggaaatcatt tcattcatgt cactcttgat 6061 ggtgcaccga tgagagaatc tccatttaga cttcgcgtcg gtggaaaaga tctttgtgat 6121 ccgactgcaa tctctgcatc tggtgatgga ttggtgaaag gtacaactgg acaaaagtgt 6181 gaatttgtta tcaacacagc caatgctgga gccggaattc tcactgttca gatggatgga 6241 ccatcaaagg caacattgga tgcttatgaa ctggagaaag gctacaaagt gagatatact 6301 ccattggctc caggatctta ctttgcttct gtcaagtaca atggaatcca tgctccggga 6361 tctccgttca agattcctgt tgaaggaaaa gaattgggag gaaatgggta caatgagact 6421 tcccatgtta agattgacgc agttgcaaag acctcaaagg gtactgtagc tgtcgttcca 6481 gaatatcaag gagatgccgc taaggtcacc gcaaaaggag ccggtttgaa caagttcttc 6541 ccaggacgtc cagctgcttt ccaaatcgac actggactcg ctggaaccaa tctgttgatg 6601 gtgggagttg ttacaacaaa aggaccatgt gaggaagttg tcgtacgtca tcaaggatcc 6661 ggacattatg tgtgctcata ccgtattccg gatagagtca aaggattcgt tttcatcaaa 6721 tatggagata aggaaatccc cggttctcca tttgccattg agccataagc ggcctccctt 6781 ctactgctca taatctacac cgaaagtgct ttataattca ttcaacggtt tttgtttttc 6841 tctcgctgcc ccctatctga ttttgttttt gaaatgtaaa ttttcgtaat ttgttttcct 6901 agtagatttt gtaatttttc cttttcaaaa gtgtgttctt ctcccccata taaccgttgc 6961 catattgcac aaagttttta ccccctgaat ctgaaaaact taaaatagtt ttaatcaatt 7021 tttaattgta atttccccgt ttgtttgccc ccaacccgtt catcaactgt tcttttattt 7081 ctctgaagaa aatatgaaaa atatcaaaat ctg //