Dbfetch

LOCUS       NM_001027551            2248 bp    mRNA    linear   INV 22-NOV-2023
DEFINITION  Caenorhabditis elegans Polycystin cation channel PKD1/PKD2
            domain-containing protein (cup-5), mRNA.
ACCESSION   NM_001027551
VERSION     NM_001027551.5
DBLINK      BioProject: PRJNA158
KEYWORDS    RefSeq.
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 2248)
  AUTHORS   Sulson,J.E. and Waterston,R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282 (5396), 2012-2018 (1998)
   PUBMED   9851916
  REMARK    Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE   2  (bases 1 to 2248)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2248)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (29-OCT-2023) WormBase Group, European Bioinformatics
            Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE   4  (bases 1 to 2248)
  AUTHORS   Sulson,J.E. and Waterston,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
            Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
            at Washington University, St. Louis, MO 63110, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by WormBase. This
            record is derived from an annotated genomic sequence (NC_003281).
            
            On May 27, 2020 this sequence version replaced NM_001027551.4.
FEATURES             Location/Qualifiers
     source          1..2248
                     /organism="Caenorhabditis elegans"
                     /mol_type="mRNA"
                     /strain="Bristol N2"
                     /db_xref="taxon:6239"
                     /chromosome="III"
     gene            1..2248
                     /gene="cup-5"
                     /locus_tag="CELE_R13A5.1"
                     /db_xref="GeneID:176074"
                     /db_xref="WormBase:WBGene00000846"
     CDS             7..2001
                     /gene="cup-5"
                     /locus_tag="CELE_R13A5.1"
                     /standard_name="R13A5.1d"
                     /note="Confirmed by transcript evidence"
                     /codon_start=1
                     /product="Polycystin cation channel PKD1/PKD2
                     domain-containing protein"
                     /protein_id="NP_001022722.2"
                     /db_xref="EnsemblGenomes-Gn:WBGene00000846"
                     /db_xref="EnsemblGenomes-Tr:R13A5.1d.1"
                     /db_xref="EnsemblGenomes-Tr:R13A5.1d.2"
                     /db_xref="GeneID:176074"
                     /db_xref="GOA:H2KYJ9"
                     /db_xref="InterPro:IPR013122"
                     /db_xref="InterPro:IPR039031"
                     /db_xref="UniProtKB/TrEMBL:H2KYJ9"
                     /db_xref="WormBase:WBGene00000846"
                     /translation="MSRRSTTDRSDFNDNASNASSNASRRPTINFQEIMEDLPHHERE
                     TGERLRRHLQFFFMNPMEKWKVRHQLPYKLVLQVLKIVFVTMQLILFAEMRMSHVDFL
                     EDTTTVMRHRFLKEWNDDRDALQYPPAEGRYSVYDDQGLSEHLSFLINSYYSIRNDSF
                     ASFSYDVVSHPSGNLGAQISFESIPPIEVLIDRISNVTVNNNTYNFDIREVKDTKRLN
                     LTETEVFQIGQSDDAVRDILATRGITFLPEDALKISTVQFKFRLRTIHYSPTAGDQKP
                     ECYKISVSIKFDNSRHTGQVHVTLSTVVSYVNVCNGRIIKGVGWSFDTLLIGGTDIFV
                     LILCILSLILCCRALIKAHLLQIKTSDYFENVLKNKITVTDQLDFLNLWYVMIVVNDA
                     LIIIGTVAKISIEFQDFDNSLFTLTSIFLGMGALLVYVGVLRYFGFFSQYNILMLTLK
                     RSAPNIMRFMTCAIVLYAGFLIAGWVIIGPYSMKFRTLAESSEALFSLLNGDDMFATF
                     YTINDSNTVIKVFGTVYIYLFVSLFIYVVLSLFIAIIMDAYEVVKDRYSDGLRAIEKR
                     GCLRDFVESNPPPSELGSPTTRSAYAPSNLLNLAAGNDSSRALRALHAIDNARDWLSS
                     LRDGTRFQSFSNPLNDSNEDVLADQNANGNDPHNSRPSNV"
ORIGIN      
        1 tttcagatgt ctcgccggag cacaactgat cgttcagact tcaacgataa tgcttcgaat
       61 gcttcttcaa atgcttctcg aaggccaaca ataaattttc aagaaataat ggaagatctt
      121 ccgcaccacg aaagagaaac cggcgaacgt cttcgccgtc atctccaatt cttttttatg
      181 aatccaatgg agaaatggaa agtcagacat caactgccct ataagttggt tctacaagtg
      241 ctcaaaatag ttttcgttac catgcaatta attttattcg cggaaatgcg catgtctcat
      301 gttgattttc tcgaagacac cacaacagtt atgagacatc gatttttaaa agaatggaat
      361 gacgacagag atgcattaca atatccacca gctgaaggaa gatattcggt ttatgatgat
      421 caaggattat ccgagcattt gagctttttg attaattctt attattcaat tcgcaatgat
      481 tcatttgctt cattttccta tgacgttgta agtcatccat ctggaaatct tggcgctcaa
      541 attagttttg aatctattcc acctattgaa gttcttatcg atcgaatttc caacgtaaca
      601 gtgaacaata acacttataa tttcgacatt cgtgaagtga aagacacgaa acgtctgaat
      661 ctaacagaaa cggaagtctt ccaaatcgga caatccgatg atgctgttcg agatattctc
      721 gccactcgtg gaatcacatt tctcccagaa gacgcgctca agatatcgac ggtccaattc
      781 aaatttcgac tacgaacaat tcattattca ccaacagccg gagatcagaa accagaatgc
      841 tataagatat cagtttctat caaatttgat aattcaaggc atacaggaca ggttcatgtc
      901 actctatcaa ctgtggtttc ttatgtgaat gtttgtaatg gaaggatcat caaaggtgtt
      961 ggatggtcat ttgacacact tttaatcggc ggaaccgata ttttcgttct cattctttgc
     1021 attctatcac tgattctctg ctgccgagcc ctcatcaaag cccatctact tcaaatcaaa
     1081 acaagcgact attttgagaa tgtactcaaa aataagatca ccgttaccga tcaactcgat
     1141 tttctgaatt tgtggtatgt gatgattgtg gtcaacgatg cgcttattat cattggaact
     1201 gttgcaaaaa tatccatcga gtttcaggat ttcgacaatt ccctcttcac gctaacttcg
     1261 attttcctcg gaatgggagc tttgctggta tatgtcggag ttcttcgata ttttggattt
     1321 ttcagtcaat ataatatcct catgctcacg ctcaaacgat cggcacccaa tatcatgcgc
     1381 ttcatgacgt gtgccattgt actttacgct ggtttcttga ttgccggatg ggttattatt
     1441 ggcccgtaca gtatgaagtt ccgtacactg gcagaatcat cggaagctct attttcgctt
     1501 ctcaacggtg acgatatgtt cgccacgttt tacactatta atgattccaa tacagttatc
     1561 aaggtatttg ggacagtgta catctaccta ttcgtgtcac tctttatcta tgtagtatta
     1621 tcactgttca ttgcaattat catggatgca tatgaagtcg tcaaggatcg ctactcagac
     1681 ggtcttcgag ccatcgaaaa acgtggatgt cttcgcgatt tcgtggaatc gaatccaccg
     1741 ccgtcggaac tcggctcacc gacgactcga tccgcctacg caccgtctaa tctgctcaat
     1801 ctggcggctg gcaacgactc gagtagagct cttcgtgctc ttcatgccat tgacaatgct
     1861 cgcgattggc tgagcagctt aagagatgga actcgttttc aatcattctc caacccgctg
     1921 aacgactcaa atgaagatgt attagccgac caaaatgcca atggaaacga tcctcacaat
     1981 tctaggccat cgaatgtata gagtttctca atttaatttt cttttgttat caaaaacaac
     2041 tttgtctgta tttttggtca tcttcattca tcttccatcc catccgtttc tttctccttc
     2101 ctctttcata tttattcccc tctgaacaac ctacttatca tgtgtatatg tggtgctatg
     2161 tacttttgtg atattcttct tccgttttgt tcgtgattta taatttgtga tttcttgaga
     2221 acttaataaa ttgtaattta ttcaaata
//