Dbfetch
LOCUS NM_001027551 2248 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Polycystin cation channel PKD1/PKD2 domain-containing protein (cup-5), mRNA. ACCESSION NM_001027551 VERSION NM_001027551.5 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 2248) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 2248) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2248) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 2248) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003281). On May 27, 2020 this sequence version replaced NM_001027551.4. FEATURES Location/Qualifiers source 1..2248 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="III" gene 1..2248 /gene="cup-5" /locus_tag="CELE_R13A5.1" /db_xref="GeneID:176074" /db_xref="WormBase:WBGene00000846" CDS 7..2001 /gene="cup-5" /locus_tag="CELE_R13A5.1" /standard_name="R13A5.1d" /note="Confirmed by transcript evidence" /codon_start=1 /product="Polycystin cation channel PKD1/PKD2 domain-containing protein" /protein_id="NP_001022722.2" /db_xref="EnsemblGenomes-Gn:WBGene00000846" /db_xref="EnsemblGenomes-Tr:R13A5.1d.1" /db_xref="EnsemblGenomes-Tr:R13A5.1d.2" /db_xref="GeneID:176074" /db_xref="GOA:H2KYJ9" /db_xref="InterPro:IPR013122" /db_xref="InterPro:IPR039031" /db_xref="UniProtKB/TrEMBL:H2KYJ9" /db_xref="WormBase:WBGene00000846" /translation="MSRRSTTDRSDFNDNASNASSNASRRPTINFQEIMEDLPHHERE TGERLRRHLQFFFMNPMEKWKVRHQLPYKLVLQVLKIVFVTMQLILFAEMRMSHVDFL EDTTTVMRHRFLKEWNDDRDALQYPPAEGRYSVYDDQGLSEHLSFLINSYYSIRNDSF ASFSYDVVSHPSGNLGAQISFESIPPIEVLIDRISNVTVNNNTYNFDIREVKDTKRLN LTETEVFQIGQSDDAVRDILATRGITFLPEDALKISTVQFKFRLRTIHYSPTAGDQKP ECYKISVSIKFDNSRHTGQVHVTLSTVVSYVNVCNGRIIKGVGWSFDTLLIGGTDIFV LILCILSLILCCRALIKAHLLQIKTSDYFENVLKNKITVTDQLDFLNLWYVMIVVNDA LIIIGTVAKISIEFQDFDNSLFTLTSIFLGMGALLVYVGVLRYFGFFSQYNILMLTLK RSAPNIMRFMTCAIVLYAGFLIAGWVIIGPYSMKFRTLAESSEALFSLLNGDDMFATF YTINDSNTVIKVFGTVYIYLFVSLFIYVVLSLFIAIIMDAYEVVKDRYSDGLRAIEKR GCLRDFVESNPPPSELGSPTTRSAYAPSNLLNLAAGNDSSRALRALHAIDNARDWLSS LRDGTRFQSFSNPLNDSNEDVLADQNANGNDPHNSRPSNV" ORIGIN 1 tttcagatgt ctcgccggag cacaactgat cgttcagact tcaacgataa tgcttcgaat 61 gcttcttcaa atgcttctcg aaggccaaca ataaattttc aagaaataat ggaagatctt 121 ccgcaccacg aaagagaaac cggcgaacgt cttcgccgtc atctccaatt cttttttatg 181 aatccaatgg agaaatggaa agtcagacat caactgccct ataagttggt tctacaagtg 241 ctcaaaatag ttttcgttac catgcaatta attttattcg cggaaatgcg catgtctcat 301 gttgattttc tcgaagacac cacaacagtt atgagacatc gatttttaaa agaatggaat 361 gacgacagag atgcattaca atatccacca gctgaaggaa gatattcggt ttatgatgat 421 caaggattat ccgagcattt gagctttttg attaattctt attattcaat tcgcaatgat 481 tcatttgctt cattttccta tgacgttgta agtcatccat ctggaaatct tggcgctcaa 541 attagttttg aatctattcc acctattgaa gttcttatcg atcgaatttc caacgtaaca 601 gtgaacaata acacttataa tttcgacatt cgtgaagtga aagacacgaa acgtctgaat 661 ctaacagaaa cggaagtctt ccaaatcgga caatccgatg atgctgttcg agatattctc 721 gccactcgtg gaatcacatt tctcccagaa gacgcgctca agatatcgac ggtccaattc 781 aaatttcgac tacgaacaat tcattattca ccaacagccg gagatcagaa accagaatgc 841 tataagatat cagtttctat caaatttgat aattcaaggc atacaggaca ggttcatgtc 901 actctatcaa ctgtggtttc ttatgtgaat gtttgtaatg gaaggatcat caaaggtgtt 961 ggatggtcat ttgacacact tttaatcggc ggaaccgata ttttcgttct cattctttgc 1021 attctatcac tgattctctg ctgccgagcc ctcatcaaag cccatctact tcaaatcaaa 1081 acaagcgact attttgagaa tgtactcaaa aataagatca ccgttaccga tcaactcgat 1141 tttctgaatt tgtggtatgt gatgattgtg gtcaacgatg cgcttattat cattggaact 1201 gttgcaaaaa tatccatcga gtttcaggat ttcgacaatt ccctcttcac gctaacttcg 1261 attttcctcg gaatgggagc tttgctggta tatgtcggag ttcttcgata ttttggattt 1321 ttcagtcaat ataatatcct catgctcacg ctcaaacgat cggcacccaa tatcatgcgc 1381 ttcatgacgt gtgccattgt actttacgct ggtttcttga ttgccggatg ggttattatt 1441 ggcccgtaca gtatgaagtt ccgtacactg gcagaatcat cggaagctct attttcgctt 1501 ctcaacggtg acgatatgtt cgccacgttt tacactatta atgattccaa tacagttatc 1561 aaggtatttg ggacagtgta catctaccta ttcgtgtcac tctttatcta tgtagtatta 1621 tcactgttca ttgcaattat catggatgca tatgaagtcg tcaaggatcg ctactcagac 1681 ggtcttcgag ccatcgaaaa acgtggatgt cttcgcgatt tcgtggaatc gaatccaccg 1741 ccgtcggaac tcggctcacc gacgactcga tccgcctacg caccgtctaa tctgctcaat 1801 ctggcggctg gcaacgactc gagtagagct cttcgtgctc ttcatgccat tgacaatgct 1861 cgcgattggc tgagcagctt aagagatgga actcgttttc aatcattctc caacccgctg 1921 aacgactcaa atgaagatgt attagccgac caaaatgcca atggaaacga tcctcacaat 1981 tctaggccat cgaatgtata gagtttctca atttaatttt cttttgttat caaaaacaac 2041 tttgtctgta tttttggtca tcttcattca tcttccatcc catccgtttc tttctccttc 2101 ctctttcata tttattcccc tctgaacaac ctacttatca tgtgtatatg tggtgctatg 2161 tacttttgtg atattcttct tccgttttgt tcgtgattta taatttgtga tttcttgaga 2221 acttaataaa ttgtaattta ttcaaata //