Dbfetch
LOCUS NM_001027551 2248 bp mRNA linear INV 22-NOV-2023
DEFINITION Caenorhabditis elegans Polycystin cation channel PKD1/PKD2
domain-containing protein (cup-5), mRNA.
ACCESSION NM_001027551
VERSION NM_001027551.5
DBLINK BioProject: PRJNA158
KEYWORDS RefSeq.
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 2248)
AUTHORS Sulson,J.E. and Waterston,R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282 (5396), 2012-2018 (1998)
PUBMED 9851916
REMARK Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE 2 (bases 1 to 2248)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2248)
AUTHORS WormBase.
CONSRTM WormBase Consortium
TITLE Direct Submission
JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics
Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE 4 (bases 1 to 2248)
AUTHORS Sulson,J.E. and Waterston,R.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
at Washington University, St. Louis, MO 63110, USA
COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This
record is derived from an annotated genomic sequence (NC_003281).
On May 27, 2020 this sequence version replaced NM_001027551.4.
FEATURES Location/Qualifiers
source 1..2248
/organism="Caenorhabditis elegans"
/mol_type="mRNA"
/strain="Bristol N2"
/db_xref="taxon:6239"
/chromosome="III"
gene 1..2248
/gene="cup-5"
/locus_tag="CELE_R13A5.1"
/db_xref="GeneID:176074"
/db_xref="WormBase:WBGene00000846"
CDS 7..2001
/gene="cup-5"
/locus_tag="CELE_R13A5.1"
/standard_name="R13A5.1d"
/note="Confirmed by transcript evidence"
/codon_start=1
/product="Polycystin cation channel PKD1/PKD2
domain-containing protein"
/protein_id="NP_001022722.2"
/db_xref="EnsemblGenomes-Gn:WBGene00000846"
/db_xref="EnsemblGenomes-Tr:R13A5.1d.1"
/db_xref="EnsemblGenomes-Tr:R13A5.1d.2"
/db_xref="GeneID:176074"
/db_xref="GOA:H2KYJ9"
/db_xref="InterPro:IPR013122"
/db_xref="InterPro:IPR039031"
/db_xref="UniProtKB/TrEMBL:H2KYJ9"
/db_xref="WormBase:WBGene00000846"
/translation="MSRRSTTDRSDFNDNASNASSNASRRPTINFQEIMEDLPHHERE
TGERLRRHLQFFFMNPMEKWKVRHQLPYKLVLQVLKIVFVTMQLILFAEMRMSHVDFL
EDTTTVMRHRFLKEWNDDRDALQYPPAEGRYSVYDDQGLSEHLSFLINSYYSIRNDSF
ASFSYDVVSHPSGNLGAQISFESIPPIEVLIDRISNVTVNNNTYNFDIREVKDTKRLN
LTETEVFQIGQSDDAVRDILATRGITFLPEDALKISTVQFKFRLRTIHYSPTAGDQKP
ECYKISVSIKFDNSRHTGQVHVTLSTVVSYVNVCNGRIIKGVGWSFDTLLIGGTDIFV
LILCILSLILCCRALIKAHLLQIKTSDYFENVLKNKITVTDQLDFLNLWYVMIVVNDA
LIIIGTVAKISIEFQDFDNSLFTLTSIFLGMGALLVYVGVLRYFGFFSQYNILMLTLK
RSAPNIMRFMTCAIVLYAGFLIAGWVIIGPYSMKFRTLAESSEALFSLLNGDDMFATF
YTINDSNTVIKVFGTVYIYLFVSLFIYVVLSLFIAIIMDAYEVVKDRYSDGLRAIEKR
GCLRDFVESNPPPSELGSPTTRSAYAPSNLLNLAAGNDSSRALRALHAIDNARDWLSS
LRDGTRFQSFSNPLNDSNEDVLADQNANGNDPHNSRPSNV"
ORIGIN
1 tttcagatgt ctcgccggag cacaactgat cgttcagact tcaacgataa tgcttcgaat
61 gcttcttcaa atgcttctcg aaggccaaca ataaattttc aagaaataat ggaagatctt
121 ccgcaccacg aaagagaaac cggcgaacgt cttcgccgtc atctccaatt cttttttatg
181 aatccaatgg agaaatggaa agtcagacat caactgccct ataagttggt tctacaagtg
241 ctcaaaatag ttttcgttac catgcaatta attttattcg cggaaatgcg catgtctcat
301 gttgattttc tcgaagacac cacaacagtt atgagacatc gatttttaaa agaatggaat
361 gacgacagag atgcattaca atatccacca gctgaaggaa gatattcggt ttatgatgat
421 caaggattat ccgagcattt gagctttttg attaattctt attattcaat tcgcaatgat
481 tcatttgctt cattttccta tgacgttgta agtcatccat ctggaaatct tggcgctcaa
541 attagttttg aatctattcc acctattgaa gttcttatcg atcgaatttc caacgtaaca
601 gtgaacaata acacttataa tttcgacatt cgtgaagtga aagacacgaa acgtctgaat
661 ctaacagaaa cggaagtctt ccaaatcgga caatccgatg atgctgttcg agatattctc
721 gccactcgtg gaatcacatt tctcccagaa gacgcgctca agatatcgac ggtccaattc
781 aaatttcgac tacgaacaat tcattattca ccaacagccg gagatcagaa accagaatgc
841 tataagatat cagtttctat caaatttgat aattcaaggc atacaggaca ggttcatgtc
901 actctatcaa ctgtggtttc ttatgtgaat gtttgtaatg gaaggatcat caaaggtgtt
961 ggatggtcat ttgacacact tttaatcggc ggaaccgata ttttcgttct cattctttgc
1021 attctatcac tgattctctg ctgccgagcc ctcatcaaag cccatctact tcaaatcaaa
1081 acaagcgact attttgagaa tgtactcaaa aataagatca ccgttaccga tcaactcgat
1141 tttctgaatt tgtggtatgt gatgattgtg gtcaacgatg cgcttattat cattggaact
1201 gttgcaaaaa tatccatcga gtttcaggat ttcgacaatt ccctcttcac gctaacttcg
1261 attttcctcg gaatgggagc tttgctggta tatgtcggag ttcttcgata ttttggattt
1321 ttcagtcaat ataatatcct catgctcacg ctcaaacgat cggcacccaa tatcatgcgc
1381 ttcatgacgt gtgccattgt actttacgct ggtttcttga ttgccggatg ggttattatt
1441 ggcccgtaca gtatgaagtt ccgtacactg gcagaatcat cggaagctct attttcgctt
1501 ctcaacggtg acgatatgtt cgccacgttt tacactatta atgattccaa tacagttatc
1561 aaggtatttg ggacagtgta catctaccta ttcgtgtcac tctttatcta tgtagtatta
1621 tcactgttca ttgcaattat catggatgca tatgaagtcg tcaaggatcg ctactcagac
1681 ggtcttcgag ccatcgaaaa acgtggatgt cttcgcgatt tcgtggaatc gaatccaccg
1741 ccgtcggaac tcggctcacc gacgactcga tccgcctacg caccgtctaa tctgctcaat
1801 ctggcggctg gcaacgactc gagtagagct cttcgtgctc ttcatgccat tgacaatgct
1861 cgcgattggc tgagcagctt aagagatgga actcgttttc aatcattctc caacccgctg
1921 aacgactcaa atgaagatgt attagccgac caaaatgcca atggaaacga tcctcacaat
1981 tctaggccat cgaatgtata gagtttctca atttaatttt cttttgttat caaaaacaac
2041 tttgtctgta tttttggtca tcttcattca tcttccatcc catccgtttc tttctccttc
2101 ctctttcata tttattcccc tctgaacaac ctacttatca tgtgtatatg tggtgctatg
2161 tacttttgtg atattcttct tccgttttgt tcgtgattta taatttgtga tttcttgaga
2221 acttaataaa ttgtaattta ttcaaata
//