Dbfetch
LOCUS NM_001022946 4002 bp mRNA linear PLN 14-JUL-2022 DEFINITION Schizosaccharomyces pombe retrotransposable element (Tf2-12), partial mRNA. ACCESSION NM_001022946 VERSION NM_001022946.1 DBLINK BioProject: PRJNA127 BioSample: SAMEA3138176 KEYWORDS RefSeq. SOURCE Schizosaccharomyces pombe (fission yeast) ORGANISM Schizosaccharomyces pombe Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces. REFERENCE 1 (bases 1 to 4002) AUTHORS Wood,V., Gwilliam,R., Rajandream,M.A., Lyne,M., Lyne,R., Stewart,A., Sgouros,J., Peat,N., Hayles,J., Baker,S., Basham,D., Bowman,S., Brooks,K., Brown,D., Brown,S., Chillingworth,T., Churcher,C., Collins,M., Connor,R., Cronin,A., Davis,P., Feltwell,T., Fraser,A., Gentles,S., Goble,A., Hamlin,N., Harris,D., Hidalgo,J., Hodgson,G., Holroyd,S., Hornsby,T., Howarth,S., Huckle,E.J., Hunt,S., Jagels,K., James,K., Jones,L., Jones,M., Leather,S., McDonald,S., McLean,J., Mooney,P., Moule,S., Mungall,K., Murphy,L., Niblett,D., Odell,C., Oliver,K., O'Neil,S., Pearson,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Rutter,S., Saunders,D., Seeger,K., Sharp,S., Skelton,J., Simmonds,M., Squares,R., Squares,S., Stevens,K., Taylor,K., Taylor,R.G., Tivey,A., Walsh,S., Warren,T., Whitehead,S., Woodward,J., Volckaert,G., Aert,R., Robben,J., Grymonprez,B., Weltjens,I., Vanstreels,E., Rieger,M., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Dusterhoft,A., Fritzc,C., Holzer,E., Moestl,D., Hilbert,H., Borzym,K., Langer,I., Beck,A., Lehrach,H., Reinhardt,R., Pohl,T.M., Eger,P., Zimmermann,W., Wedler,H., Wambutt,R., Purnelle,B., Goffeau,A., Cadieu,E., Dreano,S., Gloux,S., Lelaure,V., Mottier,S., Galibert,F., Aves,S.J., Xiang,Z., Hunt,C., Moore,K., Hurst,S.M., Lucas,M., Rochet,M., Gaillardin,C., Tallada,V.A., Garzon,A., Thode,G., Daga,R.R., Cruzado,L., Jimenez,J., Sanchez,M., del Rey,F., Benito,J., Dominguez,A., Revuelta,J.L., Moreno,S., Armstrong,J., Forsburg,S.L., Cerutti,L., Lowe,T., McCombie,W.R., Paulsen,I., Potashkin,J., Shpakovski,G.V., Ussery,D., Barrell,B.G. and Nurse,P. TITLE The genome sequence of Schizosaccharomyces pombe JOURNAL Nature 415 (6874), 871-880 (2002) PUBMED 11859360 REMARK Erratum:[Nature 2003 Jan 2;421(6918):94. Cerrutti L [corrected to Cerutti L]] REFERENCE 2 (bases 1 to 4002) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-JUL-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4002) AUTHORS Wood,V. CONSRTM The Schizosaccharomyces pombe Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (03-JUL-2007) European Schizosaccharomyces genome sequencing project, Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_003421). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..4002 /organism="Schizosaccharomyces pombe" /mol_type="mRNA" /strain="972h-" /db_xref="taxon:4896" /chromosome="III" gene <1..>4002 /gene="Tf2-12" /locus_tag="SPCC1020.14" /db_xref="GeneID:2538755" CDS 1..4002 /gene="Tf2-12" /locus_tag="SPCC1020.14" /codon_start=1 /product="retrotransposable element" /protein_id="NP_587955.1" /db_xref="GeneID:2538755" /db_xref="GOA:P0CT41" /db_xref="InterPro:IPR000477" /db_xref="InterPro:IPR001584" /db_xref="InterPro:IPR001969" /db_xref="InterPro:IPR012337" /db_xref="InterPro:IPR021109" /db_xref="InterPro:IPR024648" /translation="MSYANYRYMKARAKRWRPENLDGIQTSDEHLINLFAKILSKHVP EIGKFDPNKDVESYISKLDQHFTEYPSLFPNEHTKRQYTLNHLEELEQQFAERMFSEN GSLTWQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLF ILWMLPYSLRKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQPQNKNLGKESLSK KNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELPDFKCSIPCLIDTGAQA NIITEETVRAHKLPTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLVVKKF SHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEK LPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINAC PVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYH LIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMD DILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQ ENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQ TQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSA KMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPEN KRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISI TDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRT IIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYG PLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTA RMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERT NQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL PSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTK TGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSE LNYATIDESDIGTILHILEHKNREQVLYLNVKYISNLNPSTIMSGWTTLATALQADKA IVNDYIKNNNLNI" ORIGIN 1 atgtcctacg caaattatcg ttatatgaaa gcaagagcaa aacgatggag accagagaat 61 ttggatggaa ttcaaacatc agacgaacat ttaataaacc tttttgcaaa aatattatcg 121 aagcatgtac cagagatagg gaaattcgat ccaaataagg atgttgaaag ttacatttca 181 aaacttgatc aacactttac tgaataccct tcattattcc caaatgagca tactaaaaga 241 cagtatacat tgaatcacct agaagaatta gagcaacaat tcgctgaacg catgttttct 301 gagaatggaa gtcttacatg gcaagaatta ctcagacaaa cagggaaagt acaaggatcc 361 aacaaaggtg atcgtttaac taaaacattt gaaggtttta gaaatcaatt ggacaaagtt 421 caatttataa ggaaactcat gtcaaaagca aatgttgatg atttccatac tcgcttgttt 481 atattatgga tgctgccata ttccttaagg aaattaaagg aaagaaatta ctggaaatca 541 gaaatcagtg aaatttatga ctttttagag gacaaaagaa cagcctcgta tggtaaaact 601 cacaagcgtt ttcaaccgca aaataaaaat ctaggaaaag agtccctttc aaagaaaaat 661 aacaccacta atagcagaaa cctgaggaag acaaatgttt cgagaataga atactcatct 721 aacaaattcc taaatcatac taggaaacgt tacgaaatgg tattacaagc tgaacttcca 781 gacttcaagt gctcaatacc ctgtctaatc gatacgggcg ctcaagcaaa tattataaca 841 gaagaaactg ttcgagcaca taaactgcct accagaccct ggtcaaaaag tgtgatatat 901 ggtggagttt atccaaataa gattaatcgc aaaacaataa aacttaacat aagtctaaat 961 ggaatatcaa tcaaaacaga attcttggtt gtaaagaaat tttcgcatcc agctgctatc 1021 tccttcacaa cattatatga caataacatt gaaatatcta gcagtaaaca cacgctctct 1081 caaatgaaca aagtttcaaa tattgtcaag gaacctgagt taccagatat ctataaagaa 1141 ttcaaagaca ttactgcaga aaccaatacg gaaaagctac caaagccaat aaaagggtta 1201 gaatttgaag ttgaactaac tcaagaaaac tacagattac ctatcagaaa ttacccgcta 1261 ccaccgggaa aaatgcaagc tatgaatgat gaaattaatc aaggattaaa aagtggaatt 1321 atacgagaat ctaaagccat taacgcctgt ccagtaatgt tcgttccgaa aaaggaaggc 1381 accttgagaa tggtggttga ctacaaacct ttaaataagt atgtcaaacc caatatatat 1441 ccgttaccac ttattgaaca attacttgct aaaatacaag gttctacaat ttttactaaa 1501 cttgacctca aaagtgccta tcacttgata cgagtaagaa aaggagatga acataaactt 1561 gcttttcgct gtcctcgtgg agtttttgaa tatctagtaa tgccttatgg catatctaca 1621 gctccagcac attttcaata ctttatcaat acaatacttg gtgaagccaa agaatcacat 1681 gtagtatgtt atatggatga tattttaatt cattcaaaat cggaatctga acatgtaaaa 1741 catgttaaag acgttctaca gaaattgaaa aatgcgaact taattatcaa tcaagcaaaa 1801 tgtgaatttc accaatcaca agtaaaattt atagggtatc acatttcgga aaaaggattt 1861 acgccttgtc aagaaaatat agacaaagtc ttacaatgga agcaacctaa gaatcgtaaa 1921 gaattacgac aatttctagg ttctgtcaat tatcttagga aattcattcc aaagacatca 1981 caattaacac atccactcaa taatcttttg aaaaaggatg tacgctggaa atggacacca 2041 acacaaaccc aagcgataga aaacattaaa caatgtttag tttctcctcc ggtgctacga 2101 cactttgatt tcagtaaaaa gattctactg gaaactgatg cttcagatgt cgctgtagga 2161 gccgtattgt ctcaaaaaca tgatgatgat aaatactatc ctgttggata ctattcagca 2221 aagatgtcta aagcacaatt aaattatagc gtatcggaca aagaaatgct tgcaatcatt 2281 aagtctctca aacattggag acactattta gaatccacta tcgaaccttt caaaatttta 2341 acagaccatc gaaacttaat tggtcgcatt actaacgaat ccgagcctga aaacaaacgt 2401 ttagctcgtt ggcaattatt tttacaagac ttcaactttg aaattaacta cagacctgga 2461 tcagcaaatc acatagctga tgccttatcc agaattgttg acgaaacaga accaattcca 2521 aaagattcag aagacaatag tatcaacttt gttaatcaaa tctcgataac cgatgatttt 2581 aaaaaccaag tggttacaga atatacgaat gatacaaaat tgttgaattt actaaacaat 2641 gaagacaaac gagtggaaga gaatatccaa ctcaaagatg gcttactaat taacagtaaa 2701 gaccaaatct tattacctaa tgatactcag ctgactagga caattattaa aaagtatcat 2761 gaagaaggta aattgattca tccaggcatt gaacttctta caaacattat attacgtaga 2821 tttacgtgga aaggaataag aaaacaaata caagaatatg tacagaactg ccatacatgt 2881 caaataaaca aatctaggaa tcataaacct tatggacctt tacaaccaat tcccccatca 2941 gaaagacctt gggaatcttt atcaatggat tttattacag ctttaccaga atcatctggt 3001 tataatgcac ttttcgtggt agttgaccga ttttcaaaaa tggcaatctt agtaccttgt 3061 acgaaatcca ttacagcaga gcaaacagct cgaatgtttg atcaacgagt tattgcttat 3121 ttcggcaatc caaaagaaat cattgcagat aatgatcata tttttacttc ccaaacgtgg 3181 aaagatttcg cacataaata taatttcgtt atgaaatttt cgttaccata cagaccacaa 3241 actgatggac aaactgagcg tacaaaccaa actgtggaga aattactaag atgtgtatgt 3301 agcacacatc caaatacatg ggtagatcat atatccctag tgcaacaatc ttacaacaat 3361 gcgatacatt cagcaactca aatgacacct tttgagatag tacatcgcta ttcaccagct 3421 ttatcacctt tagagttacc tagctttagt gacaaaactg acgaaaactc tcaggaaacg 3481 atccaagtat ttcaaacagt taaagaacac ttgaatacaa acaacataaa gatgaaaaag 3541 tatttcgata tgaaaataca agaaattgaa gaatttcaac ctggagacct agttatggtc 3601 aaaagaacga aaacaggttt tcttcataaa tccaataaat tagcacctag ttttgcagga 3661 ccgttctatg tgttacagaa gtcgggtcca aacaactatg aattggatct tccagattca 3721 atcaagcaca tgttttcatc tacttttcat gtttctcacc tagaaaagta tcgacataat 3781 tcagaactca attacgctac cattgatgag tctgatattg gaacaattct tcatatccta 3841 gaacataaaa acagagaaca agtactctac ttaaatgtca agtacatttc gaatctaaat 3901 ccgagtacta ttatgtcagg atggactaca ttagctacag cgctacaagc ggacaaagca 3961 attgtcaatg attatattaa aaacaataat ctaaatatct ga //