Dbfetch
LOCUS NM_001014626 3149 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster gilgamesh (gish), transcript variant H, mRNA. ACCESSION NM_001014626 VERSION NM_001014626.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3149) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3149) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3149) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3149) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3149) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3149) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3149) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3149) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3149) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3149) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3149) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3149) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3149) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3149) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3149) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3149) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3149) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3149) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3149) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3149) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3149) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3149) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3149) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3149) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jan 16, 2013 this sequence version replaced NM_001014626.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3149 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3149 /gene="gish" /locus_tag="Dmel_CG6963" /gene_synonym="anon-WO0118547.425; CG6963; CK1; CK1-gamma; CK1gamma; CK1[[gamma]]; CKI-related; CKIgamma; Dmel\CG6963; Gish; Hrr25; ms(3)89B; NEST:bs27c08; spider; Spider" /note="gilgamesh" /map="89B9-89B12" /db_xref="FLYBASE:FBgn0250823" /db_xref="GeneID:49701" CDS 1245..2651 /gene="gish" /locus_tag="Dmel_CG6963" /gene_synonym="anon-WO0118547.425; CG6963; CK1; CK1-gamma; CK1gamma; CK1[[gamma]]; CKI-related; CKIgamma; Dmel\CG6963; Gish; Hrr25; ms(3)89B; NEST:bs27c08; spider; Spider" /EC_number="2.7.11.1" /note="CG6963 gene product from transcript CG6963-RH; CG6963-PH; gish-PH; spider; gilgamesh; casein kinase 1gamma; CKIg-like; NEST:bs27c08" /codon_start=1 /product="gilgamesh, isoform H" /protein_id="NP_001014626.1" /db_xref="FLYBASE:FBpp0099738" /db_xref="GeneID:49701" /db_xref="FLYBASE:FBgn0250823" /translation="MQRRERQASGGGPQTTTAGPSAGNVANATTALAGGKSSSNNMYS TRQSVSTTTGVLMVGPNFRVGKKIGCGNFGELRLGKNLYNNEHVAIKMEPMKSKAPQL HLEYRFYKLLGSHADNAPDGIPRIYHLGTCGGRYNAMVLELLGLSLEDLFNICARKFS LKTVLMIAKQLLHRIEYVHSRHLIYRDVKPENFLIGRTSTKREKIIHIIDFGLAKEYI DLDTNRHIPYREHKSLTGTARYMSINTHMGREQSRRDDLEALGHMFMYFLRGSLPWQG LKADTLKERYQKIGDTKRATPIEVLCDGHPEEFATYLRYVRRLDFFETPDYDFLRRLF QDLFDRKGYTDEGEFDWTGKTMSTPVGSLQTGHEVIISPNKDRHNVTAKTNAKGGVAA WPDVPKPGATLGNLTPADRHGSVQVVSSTNGELNPDDPTAGHSNTPITQQPEVEVVDE TKCCCFFKRKKKKSTRQK" ORIGIN 1 gtctctgtcc atgtataagc gtgtgtgtgt gtgtttgcag gcaggggaaa aaatcgcacc 61 atttttctcg tgctctcttg cgtgcgtttt ttggtctttc gaggattgtt tcgtagaaaa 121 tcagttaaac acaagcccag cttaatttat aaaaagtagt gaactaagtt gttatccaga 181 aatcgacgag cgcacagtag caaatcgagt tgcaaatttc aatattcggt ccgaacgtgt 241 gtaactgtgt ctgtgcgtgc gtgcgtgcgt gtgagagtgt atgggtgaaa aatgaggcgt 301 aatgaaaatg cgtgcaaaac tgtataaaag attgctttga tttccacgat cgtgagcatt 361 aaaagtttag gcgtgatact gaccggttaa atttccctta attgaaattt aactacatat 421 ttaaacagca acatagtccc ttttgcctaa aatgtcatca aaaactggga ggaaaaatat 481 catagcaaca atctgaatga attcggagat tcagatctgt tgtcacaaaa attgttggat 541 aaaatgtgcg aaagtgtgtt tgtcaaattg tttagccaaa attatttgtt tacatagttg 601 ttcagcgtag cacgaggctg ttttccttaa ttcttaacaa catagataca ctcgccttgg 661 ctaatttaca ccggaaccta aagccgatta acaataggaa aatagtccta cgacaaatag 721 cccgcctttt gacatatgaa cacataacta aactaccaca cagctcacca aaaacataaa 781 ataaattcgg aaagtatagc accaaagctg aaatttcaag gagatgctgc tcaaatttca 841 tacttgatgt caaacaacga cgaccccata gcaacaacaa caacaacagc agaaagagaa 901 ggaaaaggaa caactggaat aactgtaagc tagcgaacag agggagagag gcaatctctg 961 tacacacacc tgtcgtccag cgggggaaag agcaaaagag agcgacggat ctcccgtgtg 1021 tgttgttcgc atgcgcgaca tgcgcggacg ctaaatcctg cagatcctcc agtttgttcg 1081 tcaaacagag tcagcatttc ggatcaaacc agttgcctgt cagcaacatt aacagcctca 1141 acgttggaaa aaaaaaaaca aaagcagcag cggcagtcga taaaaaaatc attatcaaaa 1201 ttacggaaaa gcgatcaaaa ttcaagcgag attagctagg cgaaatgcag cgacgagaac 1261 ggcaagcaag tggcggtggc ccacaaacga caactgccgg tccatccgct ggtaatgtgg 1321 caaatgccac cacagcccta gccggtggta aaagctcaag caataacatg tattccaccc 1381 gccaatctgt aagcaccacg accggtgtac ttatggtcgg accaaatttt cgtgtcggta 1441 aaaaaattgg ctgtggtaat tttggcgaat tgcgtttagg caaaaacctt tacaacaatg 1501 aacatgtagc aataaaaatg gagcctatga agtcaaaggc tccgcaacta cacttagagt 1561 ataggtttta taaactatta ggatcacatg ccgataacgc cccagatggc ataccacgca 1621 tttatcattt gggcacttgc ggtggccgtt acaatgccat ggttttagag ttattgggat 1681 tatcattaga agatctcttc aatatttgcg cccgtaaatt ttcacttaag actgtattga 1741 tgatagcgaa acaacttctc caccggatcg aatatgttca tagtcggcac ttaatatata 1801 gggatgtgaa accagagaac tttctcattg gcagaacgtc aacaaaacgt gaaaaaatta 1861 tacatataat tgatttcggt ttggccaaag aatacattga tttagataca aataggcata 1921 taccatatcg ggagcataaa tccctaactg gaacggcacg ttatatgtca atcaacacgc 1981 acatggggcg tgagcagtcg cgacgcgatg atctggaggc attggggcat atgtttatgt 2041 atttcttaag gggttcactg ccgtggcaag gcctaaaggc tgatacactc aaggagagat 2101 atcaaaaaat cggtgatacg aaacgagcaa cgcccatcga ggtgctttgt gatggacatc 2161 cggaagagtt tgcgacatat ttgcgttatg tacggcggtt agattttttc gaaactcccg 2221 actatgattt tctgcgaaga ctgtttcaag acttattcga tcgtaaggga tacaccgacg 2281 agggcgagtt cgactggaca gggaagacaa tgtcaacgcc cgtcggatct ctgcaaactg 2341 gccatgaagt catcatttca ccaaataaag atcgtcataa tgttacggct aagacaaatg 2401 ccaaaggagg tgttgctgcg tggcctgatg tgccaaagcc gggggcaaca ctgggcaatc 2461 taacgccggc cgatcggcat ggttcagtac aggttgtgag ttcgacgaat ggcgaactaa 2521 atccggacga tcccacggcc ggacactcaa acacgcccat cacacagcag ccggaagtcg 2581 aagtggtcga tgaaacaaaa tgttgttgtt tctttaaacg aaagaagaag aaatcgacgc 2641 gccaaaaatg actagacggt gtacaatgta gtccagaacg cgaggcagtc accctgctgc 2701 gtgccacttc acattcaaac tcacgggata gcgtattgaa taatccgagt caggattata 2761 tccagcaggc aacgtcgcag catacgttgc gttatcctcc atccgcgtcg atgttgacgc 2821 caacaccaac tacaaacaca ccgacacttc cgttgtaatt tatataaata taaagccaga 2881 tgcaaaatgc agaaagcaac aaaaaaaata ttaaacgaaa cccaacaaaa caaaaacaaa 2941 acaaatgaac cccgtacaca ttaaatacac taaaaaacag taaaaacaaa caaaatgaaa 3001 ccaattttga ttaattattg taatgattgt attttattat tatttttatt atttaccaat 3061 tttgcgttta ttatataaat tattataatt attaattata ttattaatta atgctattat 3121 aaataaaaaa gaaaagaaaa ttcaaacgt //