Dbfetch
LOCUS NM_001014586 3274 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster failed axon connections (fax), transcript variant D, mRNA. ACCESSION NM_001014586 VERSION NM_001014586.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3274) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3274) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3274) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3274) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3274) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3274) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3274) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3274) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3274) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3274) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3274) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3274) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3274) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3274) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3274) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3274) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3274) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3274) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3274) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3274) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3274) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3274) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3274) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3274) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3274) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jul 15, 2014 this sequence version replaced NM_001014586.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3274 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3274 /gene="fax" /locus_tag="Dmel_CG4609" /gene_synonym="anon-EST:Liang-1.34; anon-WO0172774.62; anon-WO0172774.63; anon-WO0172774.65; anon-WO0172774.66; anon-WO0172774.67; anon-WO0172774.68; anon-WO0172774.69; CG4609; clone 1.34; Dmel\CG4609; fac; Fax; FAX" /note="failed axon connections" /map="72E5-72F1" /db_xref="FLYBASE:FBgn0014163" /db_xref="GeneID:39826" CDS 114..953 /gene="fax" /locus_tag="Dmel_CG4609" /gene_synonym="anon-EST:Liang-1.34; anon-WO0172774.62; anon-WO0172774.63; anon-WO0172774.65; anon-WO0172774.66; anon-WO0172774.67; anon-WO0172774.68; anon-WO0172774.69; CG4609; clone 1.34; Dmel\CG4609; fac; Fax; FAX" /note="CG4609 gene product from transcript CG4609-RD; CG4609-PD; fax-PD; failed axon connections; failed axonal connections" /codon_start=1 /product="failed axon connections, isoform D" /protein_id="NP_001014586.1" /db_xref="FLYBASE:FBpp0099913" /db_xref="GeneID:39826" /db_xref="FLYBASE:FBgn0014163" /translation="MALNVDHKMRFRSKKGQLPFIELNGEEIADSAIIIKELSSKYEK YLDSGLTAEQRNVSYATIAMLENHLIWIIFYWRAKYPDNVLKGYKVNLQHALGLRLPN SILNFFFKITFGRKGTKKLKAHGIGVHSAEEIEEFGKDDLKVLSEMLDCKPFFFGDEP TTLDVVAFAVLSQLHYLSKDIAYPLRDYMTEKCPNLIGHVSRMKDKCFPDWDEICTKL DLNAHIPKPEPETKEGKEGGEQEKSNEQEGTEGDKIEKELEKDKSNEKESTEENKEKE ETK" ORIGIN 1 tttcactctc tcgccgattc tctctcggct ctggcggaca accacaccct gcctctccct 61 tttttggcag agggcgcgaa agcataaaat atgccaacgg ttggctcttt gttatggccc 121 tcaatgtcga tcataagatg cgtttccgct ccaagaaggg tcagctgccg ttcatcgagc 181 tgaatgggga ggaaatcgcc gattcggcca tcatcatcaa ggaactgtcg tccaaatacg 241 agaagtacct ggactcggga ctcaccgccg agcaaaggaa tgtctcgtac gccacgattg 301 ccatgctgga gaaccatctc atctggatca tcttctactg gcgcgccaag tatccggaca 361 atgtgctcaa gggctacaag gtcaacttgc agcacgccct cggcctgcgg ctgcccaact 421 cgattctgaa cttcttcttt aagatcacct ttggtcgcaa gggcacgaag aagctgaagg 481 cgcacggcat cggtgtccac agcgccgagg agatcgagga gttcggcaag gacgacctga 541 aggtgctcag cgagatgctc gactgcaagc ctttcttctt cggcgacgag cccaccaccc 601 tggatgtggt ggccttcgct gtcctctcgc agctccacta tctgtccaag gacattgcgt 661 atccgctgcg cgactacatg accgagaagt gccccaactt gattggccac gtatctcgca 721 tgaaggacaa gtgcttcccc gactgggacg agatctgcac gaagctggac ctcaatgcgc 781 acattcccaa gccagagccc gagaccaagg agggcaagga gggtggcgag caggagaaat 841 caaacgaaca ggagggcact gagggcgaca agatcgagaa ggagttggag aaggacaagt 901 caaacgagaa ggagtcgacc gaggagaaca aagagaagga ggaaacaaag taaattcgcc 961 gttagttata tgcgtacata tatctagtat atgtgtatga tcgaaggaaa cagaaacacc 1021 cacatacaca cacattatat atatatacat atgtagtacg atactatata gtaaggccct 1081 atatagctag gcgctacgct ctcatatata agcattcaga catcagaaaa ccactcgaaa 1141 aacaaaaacg aaaaaaaaca tcaagaacac ccatttacaa acctaggaca actgtaaagc 1201 aaaagcaggc aaaaaccatc agcaagagaa cgatccacta agtaatgaga aaaaaacaaa 1261 aagcatatac aataacgtaa cgtaaaactt tggacatctt tttttatata tttacatgac 1321 gacgtttgta ttacaagaac aagaaacaaa aagcaaaaaa agtgaagaaa acgtaaaaaa 1381 aaaaccgtaa aaaccattta gtataaaatt ataaaagttt atacgtataa atattaagac 1441 gatgaatgaa agcgatgaga gcggggggag aaattataaa aaattagtta aagaacgcga 1501 ataaaacaaa gaacaagtga gcaaaacgtg agtaaaaaga gtgaagccag ataggacgaa 1561 aagttagcga ggtgtagaac agcattcaat acgcattaat cattagtttt cattcaaaag 1621 cgatctatat aatacactca tcgacactca cactcactct cacacacact caacaaaaaa 1681 cacaacacaa aacaacacac tctacacaca tatagcatat gcagcaacaa ttgcaactcg 1741 atggtattgt ttactcttcc aaaattgatt aagcttaaag taacgaaagt aacgaaagga 1801 accgctacca gtacgatagg aagatacgat agtgatggtt agtagggatg gcatgcaatg 1861 gggatgagaa tgcaaatgca aatgcgaatg cgaatggtat aggaatgata taacggaatg 1921 acggcaatta agtttatttt ttatatatat atgattgcaa atagtaattt tgattctcgt 1981 gtgcaaataa ttaaacaaaa tggataaaat ttattactta taattatata cataaacatt 2041 atatacgccc attatgcata aagatgtgta taaaaaaaaa caaagcaaaa caaaacaaaa 2101 caaaaacgac aaagcataaa aactgtatgt tggttctttt attatattat actttatttc 2161 tataaatatt attgtaattg tactgtgtat tatgattttg ctaaccaaaa tcccttagta 2221 tgagatgctc atcgatattt cacccccata cacaaaatca aatcaattcg aaccaaaaag 2281 aatactcggc catccaaacg aacaaaattt accatttatt ttgtacgcaa ttgtaactac 2341 ttttatatgt atgtacatat gtatgtacat tctctatttt ggtacgtcca ctgaaacaaa 2401 attatagtac gcctcatttg atttttcaac tgtcttgtgt ttcatacgat ttaatttaat 2461 gatattgatt atgcaaatat atatataaat ataaacatca tttctattgt aattaaaatg 2521 ctgcagacaa caaagacgaa cgacaaaaac tcatagaaaa cacaaaaaaa acatctgagg 2581 agaagccgga gcggaagaac tggaagaatt ctccgcgggg aggtcactac ccccctcgcg 2641 ttctcctact ccaacacttt ctccctttac atccagttgg ccttccgttt attcacggat 2701 tcctcggtgt ttattgtttt cctttttttc tcgccaactt ctcataaaat caaagaatca 2761 tcatcagccg cagatggaga atggaatgaa tgaaatcttt aagtaaatag ggtaaaactc 2821 acgcaactaa gaaatgaaga aaagcgaaaa caaaaacata tacagaaccc attgaggcgc 2881 gacagaagca gtgaaaacaa tttgggggaa ggtcaaaaac aagatatgaa gcaggagaag 2941 acgagcgggc gatcgatcga tccacgaaga aatctctata acgatacgat ttgtagacta 3001 cgcaagtatt tttatgtatt aaaggttatg ttgtaagttt ttatcacaat atttgtattg 3061 tagctcagtg ttttatatga ttatataaaa tggataaaga aaatgaaaca aaaatgaaat 3121 gaaaatgaaa atgataacga taaaccgaga tgaaaccgaa aaccataaaa gcgtaaaaac 3181 ccgaagagca aacccggaca gaaagaaaaa ttattgtatt acatacatct tatatataat 3241 aaatatgctt cttaataaaa aaacaaaaca aaac //