Dbfetch
ID HLA09786; SV 2; standard; DNA; HUM; 3172 BP. XX AC HLA09786; XX SV HLA09786.2 XX DT 26-JUN-2013 (Rel. 3.13.0, Created, Version 1) DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 2) XX DE HLA-A*68:27:02, Human MHC Class I sequence XX KW Human MHC; HLA; Class I; HLA-A; Allele; HLA-A*68:27:02; XX OS Homo Sapiens (human) OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates; OC Catarrhini; Hominidae; Homo. XX CC -------------------------------------------------------------------------- CC IPD-IMGT/HLA Release Version 3.55.0 CC -------------------------------------------------------------------------- CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative CC Commons Attribution-NoDerivs License, see; CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details. CC -------------------------------------------------------------------------- XX RN [1] RP 1-3172 RX PUBMED; 36999238. RA Pagkrati I, Duke JL, Mbunwe E, Mosbruger TL, Ferriola D, Wasserman J, Dinou RA A, Tairis N, Damianos G, Kotsopoulou I, Papaioannou J, Giannopoulos D, RA Beggs W, Nyambo T, Mpoloka SW, Mokone GG, Njamnshi AK, Fokunang C, RA Woldemeskel D, Belay G, Maiers M, Tishkoff SA, Monos DS; RT "Genomic characterization of HLA class I and class II genes in ethnically RT diverse sub-Saharan African populations: A report on novel HLA alleles."; RL HLA 102:192-205(2023). XX CC -------------------------------------------------------------------------- CC The sequence below is the official allele sequence as approved by the CC WHO Nomenclature Committee for Factors of the HLA System. CC Any cross references may differ from the sequence shown below. CC -------------------------------------------------------------------------- XX DR EMBL; KC959258; KC959258.1. DR EMBL; OK332055; OK332055.1. XX FH Key Location/Qualifiers FH FT source 1..3172 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT /ethnic="African, Undefined" FT /cell_line="18-2815-Seq3" FT /cell_line="18-4352-Seq3" FT /cell_line="HG00005937" FT CDS join(79..151,282..551,793..1068,1669..1944,2044..2160, FT 2599..2631,2774..2821,2991..2995) FT /codon_start=1 FT /gene="HLA-A" FT /allele="HLA-A*68:27:02" FT /product="MHC Class I HLA-A*68:27:02 sequence" FT /translation="MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAQSQTDRVDLGT FT LRGYYNQSEAGSHTIQRMYGCDVGPDGRFLRGYHQYAYDGKDYIALKEDLRSWTAADMA FT AQTTKHKWEAAHVAEQWRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHE FT ATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWVAVVVPSGQEQRY FT TCHVQHEGLPKPLTLRWEPSSQPTIPIVGIIAGLVLFGAVITGAVVAAVMWRRKSSDRK FT GGSYSQAASSDSAQGSDVSLTACKV" FT UTR 1..78 FT exon 79..151 FT /number="1" FT intron 152..281 FT /number="1" FT exon 282..551 FT /number="2" FT intron 552..792 FT /number="2" FT exon 793..1068 FT /number="3" FT intron 1069..1668 FT /number="3" FT exon 1669..1944 FT /number="4" FT intron 1945..2043 FT /number="4" FT exon 2044..2160 FT /number="5" FT intron 2161..2598 FT /number="5" FT exon 2599..2631 FT /number="6" FT intron 2632..2773 FT /number="6" FT exon 2774..2821 FT /number="7" FT intron 2822..2990 FT /number="7" FT exon 2991..2995 FT /number="8" FT UTR 2996..3172 SQ Sequence 3172 BP; 616 A; 915 C; 975 G; 666 T; 0 other; ccaatcagtg tcgtcgcggt cgcggttcta aagtccgcac gcacccaccg ggactcagat 60 tctccccaga cgccgaggat ggccgtcatg gcgccccgaa ccctcgtcct gctactctcg 120 ggggccctgg ccctgaccca gacctgggcg ggtgagtgcg gggtcgggag ggaaacggcc 180 tctgtgggga gaagcaaggg gcccgcccgg cgggggcgca ggacccggga agccgcgcct 240 ggaggagggt cgggcgggtc tcagccactc ctcgccccca ggctcccact ccatgaggta 300 tttctacacc tccgtgtccc ggcccggccg cggggagccc cgcttcatcg ccgtgggcta 360 cgtggacgac acgcagttcg tgcggttcga cagcgacgcc gcgagccaga ggatggagcc 420 gcgggcgccg tggatagagc aggaggggcc ggagtattgg gaccggaaca cacggaatgt 480 gaaggcccag tcacagactg accgagtgga cctggggacc ctgcgcggct actacaacca 540 gagcgaggcc ggtgagtgac cccggcccgg ggcgcaggtc acgacccctc atcccccacg 600 gacgggccag gtcgcccaca gtctccgggt ccgagatccg ccccgaagcc gcgggacccc 660 gagacccttg ccccgggaga ggcccaggcg cctttacccg gtttcatttt cagtttaggc 720 caaaaatccc cccgggttgg tcggggcggg gcggggctcg ggggaccggg ctgacctcgg 780 ggtccgggcc aggttctcac accatccaga ggatgtatgg ctgcgacgtg gggccggacg 840 ggcgcttcct ccgcgggtac caccagtacg cctacgacgg caaggattac atcgccctga 900 aagaggacct gcgctcttgg accgcagcgg acatggcagc tcagaccacc aagcacaagt 960 gggaggcggc ccatgtggcg gagcagtgga gagcctacct ggagggcacg tgcgtggagt 1020 ggctccgcag atacctggag aacgggaagg agacgctgca gcgcacgggt accaggggcc 1080 acggggcgcc tccctgatcg cctgtagatc tcccgggctg gcctcccaca aggaggggag 1140 acaattggga ccaacactag aatatcgccc tccctctggt cctgagggag aggaatcctc 1200 ctgggtttcc agatcctgta ccagagagtg actctgaggt tccgccctgc tctctgacac 1260 aattaaggga taaaatctct gaaggaatga cgggaagacg atccctcgaa tactgatgag 1320 tggttccctt tgacacacac aggcagcagc cttgggcccg tgacttttcc tctcaggcct 1380 tgttctctgc ttcacactca atgtgtgtgg gggtctgagt ccagcacttc tgagtccctc 1440 agcctccact caggtcagga ccagaagtcg ctgttccctc ttcagggact agaattttcc 1500 acggaatagg agattatccc aggtgcctgt gtccaggctg gtgtctgggt tctgtgctcc 1560 cttccccatc ccaggtgtcc tgtccattct caagatagcc acatgtgtgc tggaggagtg 1620 tcccatgaca gatgcaaaat gcctgaatga tctgactctt cctgacagac gcccccaaaa 1680 cgcatatgac tcaccacgct gtctctgacc atgaagccac cctgaggtgc tgggccctga 1740 gcttctaccc tgcggagatc acactgacct ggcagcggga tggggaggac cagacccagg 1800 acacggagct cgtggagacc aggcctgcag gggatggaac cttccagaag tgggtggctg 1860 tggtggtgcc ttctggacag gagcagagat acacctgcca tgtgcagcat gagggtttgc 1920 ccaagcccct caccctgaga tggggtaagg agggagacgg gggtgtcatg tcttttaggg 1980 aaagcaggag cctctctgac ctttagcagg gtcagggccc ctcaccttcc cctcttttcc 2040 cagagccgtc ttcccagccc accatcccca tcgtgggcat cattgctggc ctggttctct 2100 ttggagctgt gatcactgga gctgtggtcg ctgctgtgat gtggaggagg aagagctcag 2160 gtggggaagg ggtgaagggt gggtctgaga tttcttgtct cactgagggt tccaagaccc 2220 aggtagaagt gtgccctgcc tcgttactgg gaagcaccac ccacaattat gggcctaccc 2280 agcctgggcc ctgtgtgcca gcacttactc ttttgtaaag cacctgttaa aatgaaggac 2340 agatttatca ccttgattac agcggtgatg ggacctgatc ccagcagtca caagtcacag 2400 gggaaggtcc ctgaggacct tcaggagggc ggttggtcca ggacccacac ctgctttctt 2460 catgtttcct gatcccgccc tgggtctgca gtcacacatt tctggaaact tctctgaggt 2520 ccaagacttg gaggttcctc taggacctta aggccctgac tcctttctgg tatctcacag 2580 gacattttct tcccacagat agaaaaggag ggagctactc tcaggctgca agtaagtatg 2640 aaggaggctg atgcctgagg tccttgggat attgtgtttg ggagcccatg ggggagctca 2700 cccaccccac aattcctcct ctagccacat cttctgtggg atctgaccag gttctgtttt 2760 tgttctaccc caggcagtga cagtgcccag ggctctgatg tgtctctcac agcttgtaaa 2820 ggtgagagcc tggagggcct gatgtgtgtt gggtgttggg cggaacagtg gacacagctg 2880 tgctatgggg tttctttcca ttggatgtat tgagcatgcg atgggctgtt taaagtgtga 2940 cccctcactg tgacagatac gaatttgttc atgaatattt ttttctatag tgtgagacag 3000 ctgccttgtg tgggactgag aggcaagagt tgttcctgcc cttccctttg tgacttgaag 3060 aaccctgact ttgtttctgc aaaggcacct gcatgtgtct gtgttcgtgt aggcataatg 3120 tgaggaggtg gggagaccac cccaccccca tgtccaccat gaccctcttc cc 3172 //