Dbfetch

ID   HLA08924; SV 2; standard; DNA; HUM; 7477 BP.
XX
AC   HLA08924;
XX
SV   HLA08924.2
XX
DT   30-NOV-2012 (Rel. 3.11.0, Created, Version 1)
DT   16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 2)
XX
DE   HLA-DQB1*02:10, Human MHC Class II sequence
XX
KW   Human MHC; HLA; Class II; HLA-DQB1; Allele; HLA-DQB1*02:10;
XX
OS   Homo Sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates;
OC   Catarrhini; Hominidae; Homo.
XX
CC   --------------------------------------------------------------------------
CC   IPD-IMGT/HLA Release Version 3.55.0
CC   --------------------------------------------------------------------------
CC   Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative
CC   Commons Attribution-NoDerivs License, see;
CC   http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details.
CC   --------------------------------------------------------------------------
XX
RN   [1]
RP   1-7477
RX   PUBMED; 25500251.
RA   Adamek M, Klages C, Bauer M, Kudlek E, Drechsler A, Leuser B, Scherer S,
RA   Opelz G, Tran TH;
RT   "Seven novel HLA alleles reflect different mechanisms involved in the
RT   evolution of HLA diversity: Description of the new alleles and review of
RT   the literature.";
RL   Human Immunology 76:30-35(2015).
XX
CC   --------------------------------------------------------------------------
CC   The sequence below is the official allele sequence as approved by the
CC   WHO Nomenclature Committee for Factors of the HLA System.
CC   Any cross references may differ from the sequence shown below.
CC   --------------------------------------------------------------------------
XX
DR   EMBL; HF545657; HF545657.1.
DR   EMBL; LR777796; LR777796.1.
DR   EMBL; LR777797; LR777797.1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..7477
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT                   /ethnic="European, Undefined"
FT                   /cell_line="DKMS-LSL_ID16222211"
FT                   /cell_line="DKMS-LSL_ID16223339"
FT                   /cell_line="R49877"
FT   CDS             join(526..634,2073..2342,5229..5510,6027..6137,7258..7271)
FT                   /codon_start=1
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*02:10"
FT                   /product="MHC Class II HLA-DQB1*02:10 sequence"
FT                   /translation="MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKG
FT                   MCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKR
FT                   AAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW
FT                   FRNGQEETAGIVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA
FT                   QSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGLLH"
FT   UTR             1..525
FT   exon            526..634
FT                   /number="1"
FT   intron          635..2072
FT                   /number="1"
FT   exon            2073..2342
FT                   /number="2"
FT   intron          2343..5228
FT                   /number="2"
FT   exon            5229..5510
FT                   /number="3"
FT   intron          5511..6026
FT                   /number="3"
FT   exon            6027..6137
FT                   /number="4"
FT   intron          6138..6622
FT                   /number="4"
FT   exon            6623..6646
FT                   /number="5"
FT                   /pseudo
FT   intron          6647..7257
FT                   /number="5"
FT   exon            7258..7271
FT                   /number="6"
FT   UTR             7272..7477
SQ   Sequence 7477 BP; 1893 A; 1740 C; 1779 G; 2065 T; 0 other;
     ttctaagaac tttgctcttt tcaccaaaac ttaaggctcc tcagggtgtg tctaagacaa        60
     cagcagtaaa aatgtctatg acagcaattt tctctcccct gaaatatgat ccccacttaa       120
     tttgccctat tgaaagaatc ccaagtataa gaacaactgg tttttaatca atattacaaa       180
     gatgtttact gttgaatcgc atttttcttt ggcttcttaa aatcccttag gcattcaatc       240
     ttcagctctt ccataattga gaggaaattt tcacctcaaa tgttcatcca gtgcaattga       300
     aagacgtcac agtgccaggc actggattca gaaccttcac acaaaaaaaa tctgcccaga       360
     gacagatgag gtccttcagc tccagtgctg attggttcct ttccaaggga ccatccaatc       420
     ctaccacgca tggaaacatc cacagatttt tattctttct gccaggtaca tcagatccat       480
     caggtccgag ctgtgttgac taccactttt cccttcgtct caattatgtc ttggaaaaag       540
     gctttgcgga tccccggagg ccttcgggca gcaactgtga ccttgatgct gtcgatgctg       600
     agcaccccag tggctgaggg cagagactct cccggtaagt gcagggcagc tgctctccag       660
     agccgctact ctgggaacag gctctccttg ggctggggta cggggatggt gatctccata       720
     atctcggaca caatctttta tcaacatttc ctctgttttg ggaaagagag ctatgttgca       780
     tttccattta tcttttaatg atgaagtgag gacaatccaa tcccatccta caggcttaag       840
     cctggaagag gaggagagag gagagaaaag aggagacaaa gtgttcattt actaccagtg       900
     ataggacaaa gtgagcatgg ggttattttt gaagatatga atttctccaa agacacagca       960
     ggatttgcca tttaggcgtg tcccaagact tgcctggact aaatattatg atttcctgca      1020
     ttgggaaatg caaggcagca atggtgtctg tagtctccgt atttggggaa aagttgtctg      1080
     tattcctgac ccagtggagc gtttgtggag gcaaaatctt ggtactgagg gaagctgact      1140
     ggctgaccac agaaagagag ccttcaggtt tcactgattt atgggcaaat ggtgacctga      1200
     gtgggattca gatacccgag ttgatgatgg actaaattta gtagaaagga ggatgtaaag      1260
     aagggaaata acacatactg tgaaaccact catttcagac acagaacaat actttacata      1320
     aattctctct cactccttct aacatcctgt gtgtagatat catgattttc ttttacacaa      1380
     ttatacttgt gatatggata ttctgttaca taacctgccc gggctggtga ctgccacagt      1440
     ttaatgggaa tctagtttat caaattcaaa agcttgtgct ctttcggtga ataaatgttt      1500
     ctttctagga ctcagagatc taggactccc ttctttctaa cacagaagtg agtgaacctc      1560
     acagggcact tgggagggta aatccaggca tgggaaggaa ggtattttac ccagggacca      1620
     agagaatagg cgtatcggaa gaggacaggt ttaattcctg gacctgtctc gtcattccct      1680
     tgaactgtca ggtttatgtg gataacttta tctctgaggt acccaggagc tccatggaaa      1740
     atgagatttc atgcgagaac gccctgatcc ctctaagtgc agaggtccat gtaaaatcag      1800
     cccgactgcc tcttcacttg gttcacaggc cgagacaggg acagggcttt cctccctttc      1860
     ctgcctttag gaaggcggat tcccgaagac ccccgagagg gcgggcaggg ctgggcagag      1920
     ccgccgggag gatcccaggt ctgcagcgcg aggcacgggc cggcgggaac ttgtggtcgc      1980
     gcgggctgtt ccacagctcc gggccgggtc agggtggcgg ctgcgggggc ggacgggctg      2040
     ggccgcactg actggccggt gattcctcgc agaggatttc gtgtaccagt ttaagggcat      2100
     gtgctacttc accaacggga cagagcgcgt gcgtcttgtg agcagaagca tctataaccg      2160
     agaagagatc gtgcgcttcg acagcgacgt gggggagttc cgggcggtga cgctgctggg      2220
     gctgcctgcc gccgagtact ggaacagcca gaaggacatc ctggagagga aacgggcggc      2280
     ggtggacagg gtgtgcagac acaactacca gttggagctc cgcacgacct tgcagcggcg      2340
     aggtgagcgg cgtcgcccct ctgcgaggcc cacccttggc cccaagtctc tgcgccagga      2400
     ggggcgaagg gtcgttgcct ctggaacctg agccccgttt gttccacccc agaggacagg      2460
     aggcagcggc gagagtggtg ggggcaggtg catcggaggt gcggggacct agggcagagc      2520
     agggggacag gcagagttgg ccaggctgcc tagtgtcgcc ccagcctacc cgttcgtcgg      2580
     ccttgtcctc tgctctgcat gttcttgcct cgtgccttat gcatttgcct ccttttgcct      2640
     tacctttgct aagcagctct ctctgctcag aatgcccgcc ctcttcccct gcccgcccgc      2700
     ccgccccgct agcactgccc cacccagcaa ggcccacgtg cacagctctt gcagcaggaa      2760
     gcttcaggct tagcctggtg gagttagggc tgttccacaa ctgcgcgcag gacatccagc      2820
     aattacagtt gtgaaataag atattttaac ttttggcttc aaatcattat tcatcgtaat      2880
     tctgttttct taaatggctc tcattcatgg cagagatctt tgaggtgagg gtgttttaat      2940
     cattgcatgc ctagtacctg acacattgac tggtatgtgg tgtgagctca atgatcttct      3000
     gttaaattaa tgaataaatg tactcagctg cccatccact taggctcaag aaaaaaaaag      3060
     aggtaaacag agccttaaaa atggacttta ttaattattt tctataattt tgcttaatgc      3120
     tttaaagtaa actcttattg acttggatct taatagagtt tgtgaataca aaatctgagg      3180
     aaaaaagttt ttgctaaaaa taaaaacaac gcttgaaaga tattgtaatg cagtttaaat      3240
     ttcttttctt tttttttttt ttttttgaga cggattctca ctctgtcgcc caggccggag      3300
     tgcagtggcg cgatctcggc tcactgcaag ctccgcctcc cgggttcacg ccattctcct      3360
     gcctcagcct cctgagtagg tgggattaca ggcgcgtgcc accacgcccg gctaattttt      3420
     ttgtattttt agtagaggcg gggtttcacc gtgttagcca ggatggtctg gatctcctga      3480
     cctcatgatc cgcccgcctc ggcctcccaa agtgctggga ttacaggtgt gagccacagt      3540
     gcccggccgg cacttttaat ttcttagaaa agctgaacaa atggcacaat gcaaagagca      3600
     aaagttttgg aataaataga ttgaagccat taaattattg gataaaaata gtttcgggtt      3660
     gcttttggcc taggttctcc cctcccccca tgactatcca cttcaggaat aaacattctg      3720
     aaagtcaatt ttacccattt agtgagcatt tatttctaga cagttgcctt atcaaatacc      3780
     atctatgtta cgtcatttaa tctcacagtt acttgtgcat cagagattag catcaccact      3840
     ttatatattg gtacatgata aacactttat tggtcatgga tggggagatg gtcactgtag      3900
     gctaatattg gtacatgata aacactttaa gtaatcagcc cataattgct caccaagacc      3960
     ttaagcctcc caaagtacac aacattcttt gtgttcttca ctacacatcc atagagtcta      4020
     agggacgtaa agcctcgtta aagccagttt tgaccagaag cagcaatgag tctattcctg      4080
     tgtgttttcc atgttaatgg gacaaaatga tactttcaag gcattgaaaa ttcatgatta      4140
     atcaatcgct agtctgaccc cagtgttatc tatgcaggtt tgcaaaacct ttagtttact      4200
     taatactccc ttgccttctt ttgattcaca tcctaatgcc agcaaatact tatgtttttg      4260
     ctatttcagt tccatttcca taaaatttat tttatcatct tttctcataa atttatgccc      4320
     tctattttta ctcccaatct gtttaagatg aacaaatctt ataaggccac atagctgact      4380
     gttatttctg ttggactcca ggaaggagaa cctaaagaaa agttcaagtc caagcagaaa      4440
     ccgtgatttc ttccagatga tggctcatga gtgccattta attggggtgc cacctggtga      4500
     cctcagcaaa tcccagctat atttatgtgt tcacattaca ggatcattaa cccagaccga      4560
     ccactgcaca gatctcagaa tattttctat ggagaacata cataataatg cctgatttca      4620
     gaagaagaaa gtaattctca atagcaaggg gatggagtag ggtagacagc tgtaattaaa      4680
     ctcacttgtg tgataaaaag aaattaagga aaaaagaaaa tgagagaaca tattactaaa      4740
     taaagaaagc atacattaaa tatttactat agtttcacac taagagaata aaggaaatgc      4800
     aataaagtgg cctgaaaggt aaaggatgag atgtgtaaag gggtgtagta tttttactat      4860
     gagcagcaat ctgagaagat aaaggaatcg agttacgggc aaacatgatg tttgatcagt      4920
     gttatttgtt ttcaaggcct gcctaaattt ttttcaaata ttacaaactt ttgaaataac      4980
     attctttttg ttttttgctg tctgttacta ggttgcacat tttataaagg cagggaccat      5040
     ggtatgttgt ttgtctttgg attctcagtg attgttatat ttatatttgt tgaaggaacc      5100
     ttaatccaag acttggactc caagtatctt tccactctgg ttccaaggag ggaccttcct      5160
     cacagcaggc atgctgtgtg gtctcacatc tcactcctat atctttccct gtctgttact      5220
     gccctcagtg gagcccacag tgaccatctc cccatccagg acagaggccc tcaaccacca      5280
     caacctgctg gtctgctcgg tgacagattt ctatccagcc cagatcaaag tccggtggtt      5340
     tcggaatggc caggaggaga cagctggcat tgtgtccacc ccccttatta ggaatggtga      5400
     ctggaccttc cagatcctgg tgatgctgga aatgactccc cagcgtggag acgtctacac      5460
     ctgccacgtg gagcacccca gcctccagag ccccatcacc gtggagtggc gtaaggggat      5520
     attgagtttc tgttactgtg ggccccacaa gacaaaggac agagctcctt ctgacccatc      5580
     ccttcccatc tcttatccct gatgtcactg ctgagctggg aatcacagga gactagagca      5640
     cctctagttc catggcgagt gcatcagaag aatcctgatc tcatcacctt tccagatgct      5700
     agggaaatta ctctacatac tgttgctctg gatcccagtc ctgattgctc tgaggaactg      5760
     attattaggg ctggtgactg ggatcttagg gtctaagttt atggatgagt tcctgaggag      5820
     tggagatctg cttccccact ctgtcaccta ctcactgtat ccaagtacct attggctggc      5880
     ctttccctcc cttaggggtg gtctgaatgg agaactaggt tcctttgatg ccttcacctc      5940
     ctgcatctca gactggactt cagctcctca tcagggaaac tatggggtat ggggacaaac      6000
     actgacactc aggctctgct tctcaggggc tcaatctgaa tctgcccaga gcaagatgct      6060
     gagtggcatt ggaggcttcg tgctggggct gatcttcctc gggctgggcc ttatcatcca      6120
     tcacaggagt cagaaaggtg aggaacccca ggggaaaagg ggaagatggc ctgtgaccca      6180
     gaccctctgt tcagagaggt cctgtctcta gatgtagctc tttcctcctg accctgagag      6240
     gaagaaagct gagctggaag tggaaggaga caggacaagg ttggaggagg cattggaatc      6300
     tgattttact agctgaaggg tagccctgtc acagagctga ctgatagagc ttattccagg      6360
     gcatccttac cattcatcat tgtctcactg gctcctttcc aaaaacttcc tccattaaga      6420
     gggtcagagc ctcggcctcc ttgccttcta gtgacaattt cctttatttt aggggatttt      6480
     aaattagggt gcttaaggac ttgaagaaca tgaatgggaa gagaatataa ctctaattaa      6540
     gtcacatgtg tcattttcct ttggggtgag agagtggctg ttcatgtaat gagacctttc      6600
     tctgcataac ttccttttgt aagacctcaa gggcctccac cagcaggtaa tatttcagcc      6660
     gtgatccagt gtggggaggg cacaggtgta agagggaaga gcatgagctg agtgtacctg      6720
     acagtagtgg tctctgttca tggtatattt gctgctatga ggatcaagac ttaggggtga      6780
     agtttgccag tttctaggaa tctccagagg ttgttcccca gaaccaagcc ttaactttgg      6840
     tggtatcttc ctgtgaaatg tggagccaga accacggctt aaatgttaga cactaggatg      6900
     atgcccactt tgtgccacat gatggtggct actgcctgta ggcattttcc agtgactgaa      6960
     agaggctgct agtggtaggg atgaggtatc atccaatttc ctaaaaagat tgaacccttc      7020
     atattcacca gaagagtaac agctgttccc ccacctccca cacatctgca tcaagctgaa      7080
     gttctgtgtc ttcatgagct gatttcacct ttgcacagat cttgggggag gtgatgataa      7140
     tacactctgg acctcagctt tgtctgtctg aagctgcagg aggcccctga ggggtggggg      7200
     agatggcagg cccaccagcg taccctgtgc tgatcatccc tcttctctct tcttcagggc      7260
     tcctgcactg actcctgaga ctattttaac tgggattggt tatcactttt ctgtaacgcc      7320
     tgcttgtccc tgcccagaat tcccagctgt ctgtgtcagc ctgtccccct gagatcagag      7380
     tcctacagtg gctgtcacgc agccaccagg tcatctcctt tcatccccac cttgaggcgg      7440
     atggctgtga ccctacttcc tgcactgacc cacagcc                               7477
//