Dbfetch
ID HLA08924; SV 2; standard; DNA; HUM; 7477 BP.
XX
AC HLA08924;
XX
SV HLA08924.2
XX
DT 30-NOV-2012 (Rel. 3.11.0, Created, Version 1)
DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 2)
XX
DE HLA-DQB1*02:10, Human MHC Class II sequence
XX
KW Human MHC; HLA; Class II; HLA-DQB1; Allele; HLA-DQB1*02:10;
XX
OS Homo Sapiens (human)
OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates;
OC Catarrhini; Hominidae; Homo.
XX
CC --------------------------------------------------------------------------
CC IPD-IMGT/HLA Release Version 3.55.0
CC --------------------------------------------------------------------------
CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative
CC Commons Attribution-NoDerivs License, see;
CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details.
CC --------------------------------------------------------------------------
XX
RN [1]
RP 1-7477
RX PUBMED; 25500251.
RA Adamek M, Klages C, Bauer M, Kudlek E, Drechsler A, Leuser B, Scherer S,
RA Opelz G, Tran TH;
RT "Seven novel HLA alleles reflect different mechanisms involved in the
RT evolution of HLA diversity: Description of the new alleles and review of
RT the literature.";
RL Human Immunology 76:30-35(2015).
XX
CC --------------------------------------------------------------------------
CC The sequence below is the official allele sequence as approved by the
CC WHO Nomenclature Committee for Factors of the HLA System.
CC Any cross references may differ from the sequence shown below.
CC --------------------------------------------------------------------------
XX
DR EMBL; HF545657; HF545657.1.
DR EMBL; LR777796; LR777796.1.
DR EMBL; LR777797; LR777797.1.
XX
FH Key Location/Qualifiers
FH
FT source 1..7477
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT /ethnic="European, Undefined"
FT /cell_line="DKMS-LSL_ID16222211"
FT /cell_line="DKMS-LSL_ID16223339"
FT /cell_line="R49877"
FT CDS join(526..634,2073..2342,5229..5510,6027..6137,7258..7271)
FT /codon_start=1
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*02:10"
FT /product="MHC Class II HLA-DQB1*02:10 sequence"
FT /translation="MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKG
FT MCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKR
FT AAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW
FT FRNGQEETAGIVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA
FT QSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGLLH"
FT UTR 1..525
FT exon 526..634
FT /number="1"
FT intron 635..2072
FT /number="1"
FT exon 2073..2342
FT /number="2"
FT intron 2343..5228
FT /number="2"
FT exon 5229..5510
FT /number="3"
FT intron 5511..6026
FT /number="3"
FT exon 6027..6137
FT /number="4"
FT intron 6138..6622
FT /number="4"
FT exon 6623..6646
FT /number="5"
FT /pseudo
FT intron 6647..7257
FT /number="5"
FT exon 7258..7271
FT /number="6"
FT UTR 7272..7477
SQ Sequence 7477 BP; 1893 A; 1740 C; 1779 G; 2065 T; 0 other;
ttctaagaac tttgctcttt tcaccaaaac ttaaggctcc tcagggtgtg tctaagacaa 60
cagcagtaaa aatgtctatg acagcaattt tctctcccct gaaatatgat ccccacttaa 120
tttgccctat tgaaagaatc ccaagtataa gaacaactgg tttttaatca atattacaaa 180
gatgtttact gttgaatcgc atttttcttt ggcttcttaa aatcccttag gcattcaatc 240
ttcagctctt ccataattga gaggaaattt tcacctcaaa tgttcatcca gtgcaattga 300
aagacgtcac agtgccaggc actggattca gaaccttcac acaaaaaaaa tctgcccaga 360
gacagatgag gtccttcagc tccagtgctg attggttcct ttccaaggga ccatccaatc 420
ctaccacgca tggaaacatc cacagatttt tattctttct gccaggtaca tcagatccat 480
caggtccgag ctgtgttgac taccactttt cccttcgtct caattatgtc ttggaaaaag 540
gctttgcgga tccccggagg ccttcgggca gcaactgtga ccttgatgct gtcgatgctg 600
agcaccccag tggctgaggg cagagactct cccggtaagt gcagggcagc tgctctccag 660
agccgctact ctgggaacag gctctccttg ggctggggta cggggatggt gatctccata 720
atctcggaca caatctttta tcaacatttc ctctgttttg ggaaagagag ctatgttgca 780
tttccattta tcttttaatg atgaagtgag gacaatccaa tcccatccta caggcttaag 840
cctggaagag gaggagagag gagagaaaag aggagacaaa gtgttcattt actaccagtg 900
ataggacaaa gtgagcatgg ggttattttt gaagatatga atttctccaa agacacagca 960
ggatttgcca tttaggcgtg tcccaagact tgcctggact aaatattatg atttcctgca 1020
ttgggaaatg caaggcagca atggtgtctg tagtctccgt atttggggaa aagttgtctg 1080
tattcctgac ccagtggagc gtttgtggag gcaaaatctt ggtactgagg gaagctgact 1140
ggctgaccac agaaagagag ccttcaggtt tcactgattt atgggcaaat ggtgacctga 1200
gtgggattca gatacccgag ttgatgatgg actaaattta gtagaaagga ggatgtaaag 1260
aagggaaata acacatactg tgaaaccact catttcagac acagaacaat actttacata 1320
aattctctct cactccttct aacatcctgt gtgtagatat catgattttc ttttacacaa 1380
ttatacttgt gatatggata ttctgttaca taacctgccc gggctggtga ctgccacagt 1440
ttaatgggaa tctagtttat caaattcaaa agcttgtgct ctttcggtga ataaatgttt 1500
ctttctagga ctcagagatc taggactccc ttctttctaa cacagaagtg agtgaacctc 1560
acagggcact tgggagggta aatccaggca tgggaaggaa ggtattttac ccagggacca 1620
agagaatagg cgtatcggaa gaggacaggt ttaattcctg gacctgtctc gtcattccct 1680
tgaactgtca ggtttatgtg gataacttta tctctgaggt acccaggagc tccatggaaa 1740
atgagatttc atgcgagaac gccctgatcc ctctaagtgc agaggtccat gtaaaatcag 1800
cccgactgcc tcttcacttg gttcacaggc cgagacaggg acagggcttt cctccctttc 1860
ctgcctttag gaaggcggat tcccgaagac ccccgagagg gcgggcaggg ctgggcagag 1920
ccgccgggag gatcccaggt ctgcagcgcg aggcacgggc cggcgggaac ttgtggtcgc 1980
gcgggctgtt ccacagctcc gggccgggtc agggtggcgg ctgcgggggc ggacgggctg 2040
ggccgcactg actggccggt gattcctcgc agaggatttc gtgtaccagt ttaagggcat 2100
gtgctacttc accaacggga cagagcgcgt gcgtcttgtg agcagaagca tctataaccg 2160
agaagagatc gtgcgcttcg acagcgacgt gggggagttc cgggcggtga cgctgctggg 2220
gctgcctgcc gccgagtact ggaacagcca gaaggacatc ctggagagga aacgggcggc 2280
ggtggacagg gtgtgcagac acaactacca gttggagctc cgcacgacct tgcagcggcg 2340
aggtgagcgg cgtcgcccct ctgcgaggcc cacccttggc cccaagtctc tgcgccagga 2400
ggggcgaagg gtcgttgcct ctggaacctg agccccgttt gttccacccc agaggacagg 2460
aggcagcggc gagagtggtg ggggcaggtg catcggaggt gcggggacct agggcagagc 2520
agggggacag gcagagttgg ccaggctgcc tagtgtcgcc ccagcctacc cgttcgtcgg 2580
ccttgtcctc tgctctgcat gttcttgcct cgtgccttat gcatttgcct ccttttgcct 2640
tacctttgct aagcagctct ctctgctcag aatgcccgcc ctcttcccct gcccgcccgc 2700
ccgccccgct agcactgccc cacccagcaa ggcccacgtg cacagctctt gcagcaggaa 2760
gcttcaggct tagcctggtg gagttagggc tgttccacaa ctgcgcgcag gacatccagc 2820
aattacagtt gtgaaataag atattttaac ttttggcttc aaatcattat tcatcgtaat 2880
tctgttttct taaatggctc tcattcatgg cagagatctt tgaggtgagg gtgttttaat 2940
cattgcatgc ctagtacctg acacattgac tggtatgtgg tgtgagctca atgatcttct 3000
gttaaattaa tgaataaatg tactcagctg cccatccact taggctcaag aaaaaaaaag 3060
aggtaaacag agccttaaaa atggacttta ttaattattt tctataattt tgcttaatgc 3120
tttaaagtaa actcttattg acttggatct taatagagtt tgtgaataca aaatctgagg 3180
aaaaaagttt ttgctaaaaa taaaaacaac gcttgaaaga tattgtaatg cagtttaaat 3240
ttcttttctt tttttttttt ttttttgaga cggattctca ctctgtcgcc caggccggag 3300
tgcagtggcg cgatctcggc tcactgcaag ctccgcctcc cgggttcacg ccattctcct 3360
gcctcagcct cctgagtagg tgggattaca ggcgcgtgcc accacgcccg gctaattttt 3420
ttgtattttt agtagaggcg gggtttcacc gtgttagcca ggatggtctg gatctcctga 3480
cctcatgatc cgcccgcctc ggcctcccaa agtgctggga ttacaggtgt gagccacagt 3540
gcccggccgg cacttttaat ttcttagaaa agctgaacaa atggcacaat gcaaagagca 3600
aaagttttgg aataaataga ttgaagccat taaattattg gataaaaata gtttcgggtt 3660
gcttttggcc taggttctcc cctcccccca tgactatcca cttcaggaat aaacattctg 3720
aaagtcaatt ttacccattt agtgagcatt tatttctaga cagttgcctt atcaaatacc 3780
atctatgtta cgtcatttaa tctcacagtt acttgtgcat cagagattag catcaccact 3840
ttatatattg gtacatgata aacactttat tggtcatgga tggggagatg gtcactgtag 3900
gctaatattg gtacatgata aacactttaa gtaatcagcc cataattgct caccaagacc 3960
ttaagcctcc caaagtacac aacattcttt gtgttcttca ctacacatcc atagagtcta 4020
agggacgtaa agcctcgtta aagccagttt tgaccagaag cagcaatgag tctattcctg 4080
tgtgttttcc atgttaatgg gacaaaatga tactttcaag gcattgaaaa ttcatgatta 4140
atcaatcgct agtctgaccc cagtgttatc tatgcaggtt tgcaaaacct ttagtttact 4200
taatactccc ttgccttctt ttgattcaca tcctaatgcc agcaaatact tatgtttttg 4260
ctatttcagt tccatttcca taaaatttat tttatcatct tttctcataa atttatgccc 4320
tctattttta ctcccaatct gtttaagatg aacaaatctt ataaggccac atagctgact 4380
gttatttctg ttggactcca ggaaggagaa cctaaagaaa agttcaagtc caagcagaaa 4440
ccgtgatttc ttccagatga tggctcatga gtgccattta attggggtgc cacctggtga 4500
cctcagcaaa tcccagctat atttatgtgt tcacattaca ggatcattaa cccagaccga 4560
ccactgcaca gatctcagaa tattttctat ggagaacata cataataatg cctgatttca 4620
gaagaagaaa gtaattctca atagcaaggg gatggagtag ggtagacagc tgtaattaaa 4680
ctcacttgtg tgataaaaag aaattaagga aaaaagaaaa tgagagaaca tattactaaa 4740
taaagaaagc atacattaaa tatttactat agtttcacac taagagaata aaggaaatgc 4800
aataaagtgg cctgaaaggt aaaggatgag atgtgtaaag gggtgtagta tttttactat 4860
gagcagcaat ctgagaagat aaaggaatcg agttacgggc aaacatgatg tttgatcagt 4920
gttatttgtt ttcaaggcct gcctaaattt ttttcaaata ttacaaactt ttgaaataac 4980
attctttttg ttttttgctg tctgttacta ggttgcacat tttataaagg cagggaccat 5040
ggtatgttgt ttgtctttgg attctcagtg attgttatat ttatatttgt tgaaggaacc 5100
ttaatccaag acttggactc caagtatctt tccactctgg ttccaaggag ggaccttcct 5160
cacagcaggc atgctgtgtg gtctcacatc tcactcctat atctttccct gtctgttact 5220
gccctcagtg gagcccacag tgaccatctc cccatccagg acagaggccc tcaaccacca 5280
caacctgctg gtctgctcgg tgacagattt ctatccagcc cagatcaaag tccggtggtt 5340
tcggaatggc caggaggaga cagctggcat tgtgtccacc ccccttatta ggaatggtga 5400
ctggaccttc cagatcctgg tgatgctgga aatgactccc cagcgtggag acgtctacac 5460
ctgccacgtg gagcacccca gcctccagag ccccatcacc gtggagtggc gtaaggggat 5520
attgagtttc tgttactgtg ggccccacaa gacaaaggac agagctcctt ctgacccatc 5580
ccttcccatc tcttatccct gatgtcactg ctgagctggg aatcacagga gactagagca 5640
cctctagttc catggcgagt gcatcagaag aatcctgatc tcatcacctt tccagatgct 5700
agggaaatta ctctacatac tgttgctctg gatcccagtc ctgattgctc tgaggaactg 5760
attattaggg ctggtgactg ggatcttagg gtctaagttt atggatgagt tcctgaggag 5820
tggagatctg cttccccact ctgtcaccta ctcactgtat ccaagtacct attggctggc 5880
ctttccctcc cttaggggtg gtctgaatgg agaactaggt tcctttgatg ccttcacctc 5940
ctgcatctca gactggactt cagctcctca tcagggaaac tatggggtat ggggacaaac 6000
actgacactc aggctctgct tctcaggggc tcaatctgaa tctgcccaga gcaagatgct 6060
gagtggcatt ggaggcttcg tgctggggct gatcttcctc gggctgggcc ttatcatcca 6120
tcacaggagt cagaaaggtg aggaacccca ggggaaaagg ggaagatggc ctgtgaccca 6180
gaccctctgt tcagagaggt cctgtctcta gatgtagctc tttcctcctg accctgagag 6240
gaagaaagct gagctggaag tggaaggaga caggacaagg ttggaggagg cattggaatc 6300
tgattttact agctgaaggg tagccctgtc acagagctga ctgatagagc ttattccagg 6360
gcatccttac cattcatcat tgtctcactg gctcctttcc aaaaacttcc tccattaaga 6420
gggtcagagc ctcggcctcc ttgccttcta gtgacaattt cctttatttt aggggatttt 6480
aaattagggt gcttaaggac ttgaagaaca tgaatgggaa gagaatataa ctctaattaa 6540
gtcacatgtg tcattttcct ttggggtgag agagtggctg ttcatgtaat gagacctttc 6600
tctgcataac ttccttttgt aagacctcaa gggcctccac cagcaggtaa tatttcagcc 6660
gtgatccagt gtggggaggg cacaggtgta agagggaaga gcatgagctg agtgtacctg 6720
acagtagtgg tctctgttca tggtatattt gctgctatga ggatcaagac ttaggggtga 6780
agtttgccag tttctaggaa tctccagagg ttgttcccca gaaccaagcc ttaactttgg 6840
tggtatcttc ctgtgaaatg tggagccaga accacggctt aaatgttaga cactaggatg 6900
atgcccactt tgtgccacat gatggtggct actgcctgta ggcattttcc agtgactgaa 6960
agaggctgct agtggtaggg atgaggtatc atccaatttc ctaaaaagat tgaacccttc 7020
atattcacca gaagagtaac agctgttccc ccacctccca cacatctgca tcaagctgaa 7080
gttctgtgtc ttcatgagct gatttcacct ttgcacagat cttgggggag gtgatgataa 7140
tacactctgg acctcagctt tgtctgtctg aagctgcagg aggcccctga ggggtggggg 7200
agatggcagg cccaccagcg taccctgtgc tgatcatccc tcttctctct tcttcagggc 7260
tcctgcactg actcctgaga ctattttaac tgggattggt tatcactttt ctgtaacgcc 7320
tgcttgtccc tgcccagaat tcccagctgt ctgtgtcagc ctgtccccct gagatcagag 7380
tcctacagtg gctgtcacgc agccaccagg tcatctcctt tcatccccac cttgaggcgg 7440
atggctgtga ccctacttcc tgcactgacc cacagcc 7477
//