Dbfetch
ID HLA08092; SV 1; standard; DNA; HUM; 3194 BP. XX AC HLA08092; XX SV HLA08092.1 XX DT 22-MAY-2012 (Rel. 3.9.0, Created, Version 1) DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 1) XX DE HLA-A*29:40, Human MHC Class I sequence XX KW Human MHC; HLA; Class I; HLA-A; Allele; HLA-A*29:40; XX OS Homo Sapiens (human) OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates; OC Catarrhini; Hominidae; Homo. XX CC -------------------------------------------------------------------------- CC IPD-IMGT/HLA Release Version 3.55.0 CC -------------------------------------------------------------------------- CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative CC Commons Attribution-NoDerivs License, see; CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details. CC -------------------------------------------------------------------------- XX RN [1] RP 1-3194 RX PUBMED; 23033953. RA Santos S, Balas A, Garcia-Sanchez F, Vesga MA, Vicario JL; RT "Sequencing of two novel HLA-A*29 alleles, A*29:39 and A*29:40."; RL Tissue Antigens 80:541-542(2012). XX CC -------------------------------------------------------------------------- CC The sequence below is the official allele sequence as approved by the CC WHO Nomenclature Committee for Factors of the HLA System. CC Any cross references may differ from the sequence shown below. CC -------------------------------------------------------------------------- XX DR EMBL; JQ963274; JQ963274.1. DR EMBL; KC875886; KC875886.1. DR EMBL; KU319388; KU319388.1. XX FH Key Location/Qualifiers FH FT source 1..3194 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT /ethnic="Undefined" FT /cell_line="139370" FT /cell_line="CTM-9097572" FT /cell_line="HG00005930" FT CDS join(181..253,383..652,894..1169,1770..2045,2145..2261, FT 2702..2734,2877..2924,3094..3098) FT /codon_start=1 FT /gene="HLA-A" FT /allele="HLA-A*29:40" FT /product="MHC Class I HLA-A*29:40 sequence" FT /translation="MAVMAPRTLLLLLLGALALTQTWAGSHSMRYFTTSVSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDLQTRNVKAQSQTDRANLGT FT LRGYYNQSEAGSHTIQMMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMA FT AQITQRKWEAARVAGQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHE FT ATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRY FT TCHVQHEGLPKPLTLRWEPSSQPTIPIVGIIAGLVLFGAVFAGAVVAAVRWRRKSSDRK FT GGSYSQAASSDSAQGSDMSLTACKV" FT UTR 1..180 FT exon 181..253 FT /number="1" FT intron 254..382 FT /number="1" FT exon 383..652 FT /number="2" FT intron 653..893 FT /number="2" FT exon 894..1169 FT /number="3" FT intron 1170..1769 FT /number="3" FT exon 1770..2045 FT /number="4" FT intron 2046..2144 FT /number="4" FT exon 2145..2261 FT /number="5" FT intron 2262..2701 FT /number="5" FT exon 2702..2734 FT /number="6" FT intron 2735..2876 FT /number="6" FT exon 2877..2924 FT /number="7" FT intron 2925..3093 FT /number="7" FT exon 3094..3098 FT /number="8" FT UTR 3099..3194 SQ Sequence 3194 BP; 604 A; 916 C; 982 G; 692 T; 0 other; tttcttttct ccctctgcca acctatgtag ggtccttctt cctggatact cacgacgcgg 60 acccagttct cactcccatt gggtgtcggg tttccagaga agccaatcag tgtcgtcgcg 120 gtcgcggttc taaagtccgc acgcacccac cgggactcag attctcccca gacgccgagg 180 atggccgtca tggcgccccg aaccctcctc ctgctactct tgggggccct ggccctgacc 240 cagacctggg cgggtgagtg cggggtcgtg gggaaaccgc ctctgcgggg agaagcaagg 300 ggcccgcccg gcggggacgc aggacccggg tagccgcgcc gggaggaggg tcgggtgggt 360 ctcagccact cctcgccccc aggctcccac tccatgaggt atttcaccac atccgtgtcc 420 cggcccggcc gcggggagcc ccgcttcatc gccgtgggct acgtggacga cacgcagttc 480 gtgcggtttg acagcgacgc cgcgagccag aggatggagc cgcgggcacc gtggatagag 540 caggaggggc cggagtattg ggacctgcag acacggaatg tgaaggccca gtcacagact 600 gaccgagcga acctggggac cctgcgcggc tactacaacc agagcgaggc cggtgagtga 660 ccccggcccg gggcgcaggt cacgacctct catcccccac ggacgggccg ggtcgcccac 720 agtctccggg tccgagatcc accccgaagc cgcgggaccc cgagaccctt gccccgggag 780 aggcccaggc gcctttaccc ggtttcattt tcagtttagg ccaaaaatcc ccccgggttg 840 gtcggggccg gacggggctc gggggactgg gctgaccgtg gggtcggggc caggttctca 900 caccatccag atgatgtatg gctgcgacgt ggggtcggac gggcgcttcc tccgcgggta 960 ccggcaggac gcctacgacg gcaaggatta catcgccttg aacgaggacc tgcgctcttg 1020 gaccgcggcg gacatggcgg ctcagatcac ccagcgcaag tgggaggcgg cccgtgtggc 1080 ggggcagttg agagcctacc tggagggcac gtgcgtggag tggctccgca gatacctgga 1140 gaacgggaag gagacgctgc agcgcacggg taccgggggc cacggggcgc ctccctgatc 1200 gcctgtagat ctcccgggct ggcctcccac aaggagggga gacaattggg accaacacta 1260 gaatatcgcc ctccctctgg tcctgaggga gaggaatcct cctgggtttc cagatcctgt 1320 accagagagt gactctgagg ttccgccctg ctctctgaca caattaaggg ataaaatctc 1380 tgaaggaatg acgggaagac gatccctcga atactgatga gtggttccct ttgacacaca 1440 ccggcagcag ccttgggccc gtgacttttc ctctcaggcc ttgttctctg cttcacactc 1500 aatgtgtgtg ggggtctgag tccagcactt ctgagtccct cagcctccac tcaggtcagg 1560 accagaagtc gctgttccct cttcagggac tagaattttc cacggaatag gagattatcc 1620 caggtgcctg tgtccaggct ggtgtctggg ttctgtgctc ccttccccat cccaggtgtc 1680 ctgtccattc tcaagatagc cacatgtgtg ctggaggagt gtcccatgac agatgcaaaa 1740 tgcctgaatg ttctgactct tcctgacaga cgcccccaag acgcatatga ctcaccacgc 1800 tgtctctgac catgaggcca ccctgaggtg ctgggccctg agcttctacc ctgcggagat 1860 cacactgacc tggcagcggg atggggagga ccagacccag gacacggagc ttgtggagac 1920 caggcctgca ggggatggaa ccttccagaa gtgggcgtct gtggtggtgc cttctggaca 1980 ggagcagaga tacacctgcc atgtgcagca tgagggtctg cccaagcccc tcaccctgag 2040 atggggtaaa gagggagatg ggggtgtcat gtcttttagg gaaagcagga gcctctctga 2100 cctttagcag ggtcagggcc cctcaccttc ccctcttttc ccagagccgt cttcccagcc 2160 caccatcccc atcgtgggca tcattgctgg cctagttctc tttggagctg tgttcgctgg 2220 agctgtggtc gctgctgtga ggtggaggag gaagagctca ggtggggtga agggatgaag 2280 ggtgggtctg agatttcttg tctcactgag ggttccaaga cccaggtaga agtgtgccct 2340 gcctcgttac tgggaagcac catccacaat tatgggccta cccagcctgg gccctgtgtg 2400 ccagcactta ctcttttgta aagcacctgt taaaatgaag gacagattta tcaccttgat 2460 tacggcggtg atgggacctg atcccagcag tcacaagtca caggggaagg tccctgagga 2520 ccttcaggag ggcggttggt ccaggaccca cacctgcttt cttcatgttt cctgatcccg 2580 ccctgggtct gcagtcacac atttctggaa acttctctga ggtccaagac ttggaggttc 2640 ctctaggacc ttaaggccct ggctcctttc tggtatctca caggacattt tcttcccaca 2700 gatagaaaag gagggagcta ctctcaggct gcaagtaagt atgaaggagg ctgatgcctg 2760 aggtccttgg gatattgtgt ttgggagccc gtgggggagc tcacccaccc cacaattcct 2820 cctctagcca catcttctgt gggatctgac caggttctgt ttttgtccta ccccaggcag 2880 tgacagtgcc cagggctctg atatgtctct cacagcttgt aaaggtgaga gcctggaggg 2940 cctgatgtgt gttgggtgtt gggcggaaca gtggacgcag ctgtgctatg gggtttcttt 3000 gcattggatg tattgagcat gcgatgggct gtttaaagtg tgactcctca ctgtgacaga 3060 tacgaatttg ttcatgaata tttttttcta tagtgtgaga cagctgcctt gtgtgggact 3120 gagaggcaag atttgttcct gcccttccct ttgtgacttg aagaaccctg actttgtttc 3180 tgcaaaggca cctg 3194 //