Dbfetch

ID   HLA04408; SV 1; standard; DNA; HUM; 270 BP.
XX
AC   HLA04408;
XX
SV   HLA04408.1
XX
DT   31-OCT-2009 (Rel. 2.28.0, Created, Version 1)
DT   16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 1)
XX
DE   HLA-DRB1*04:17:02, Human MHC Class II sequence (partial)
XX
KW   Human MHC; HLA; Class II; HLA-DRB1; Allele; HLA-DRB1*04:17:02;
XX
OS   Homo Sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates;
OC   Catarrhini; Hominidae; Homo.
XX
CC   --------------------------------------------------------------------------
CC   IPD-IMGT/HLA Release Version 3.55.0
CC   --------------------------------------------------------------------------
CC   Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative
CC   Commons Attribution-NoDerivs License, see;
CC   http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details.
CC   --------------------------------------------------------------------------
XX
RN   [1]
RP   1-270
RX   PUBMED; 21568944.
RA   Lazaro AM, Xiao Y, Henry J, Ng J, Hurley CK, Posch PE;
RT   "Ninety six novel HLA class I and II alleles identified in volunteers for
RT   the National Marrow Donor Program Registry in 2009.";
RL   Tissue Antigens 78:195-202(2011).
XX
CC   --------------------------------------------------------------------------
CC   The sequence below is the official allele sequence as approved by the
CC   WHO Nomenclature Committee for Factors of the HLA System.
CC   Any cross references may differ from the sequence shown below.
CC   --------------------------------------------------------------------------
XX
DR   EMBL; GU066752; GU066752.1.
DR   EMBL; GU320615; GU320615.1.
DR   EMBL; HM467573; HM467573.1.
DR   EMBL; HM562341; HM562341.1.
DR   EMBL; HQ230566; HQ230566.1.
DR   EMBL; HQ590530; HQ590530.1.
DR   EMBL; HQ850073; HQ850073.1.
DR   EMBL; JF309447; JF309447.1.
DR   EMBL; JN119551; JN119551.1.
DR   EMBL; JN242461; JN242461.1.
DR   EMBL; JN406385; JN406385.1.
DR   EMBL; JN418864; JN418864.1.
DR   EMBL; JQ824775; JQ824775.1.
DR   EMBL; JQ824777; JQ824777.1.
DR   EMBL; JQ824792; JQ824792.1.
DR   EMBL; JQ824795; JQ824795.1.
DR   EMBL; JQ824796; JQ824796.1.
DR   EMBL; JQ824797; JQ824797.1.
DR   EMBL; JQ824798; JQ824798.1.
DR   EMBL; KF055214; KF055214.1.
DR   EMBL; KF055215; KF055215.1.
DR   EMBL; KF055216; KF055216.1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..270
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT                   /ethnic="Admixed, European, Hispanic or Latin American, Native
FT                   American, Undefined"
FT                   /cell_line="BY00541"
FT                   /cell_line="BY00633"
FT                   /cell_line="BY00634"
FT                   /cell_line="BY00648"
FT                   /cell_line="BY00649"
FT                   /cell_line="BY00650"
FT                   /cell_line="HG00001047"
FT                   /cell_line="HG00002177"
FT                   /cell_line="HG00002178"
FT                   /cell_line="HG00002624"
FT                   /cell_line="HG00002625"
FT                   /cell_line="HG00003394"
FT                   /cell_line="HG00003395"
FT                   /cell_line="HG00003396"
FT                   /cell_line="HG00005152"
FT                   /cell_line="HG00005153"
FT                   /cell_line="HG00005154"
FT                   /cell_line="HG00005155"
FT                   /cell_line="HG00005156"
FT                   /cell_line="HG00005157"
FT                   /cell_line="HG00005158"
FT                   /cell_line="HG00015795"
FT                   /cell_line="HG10011893"
FT                   /cell_line="MDA0000146"
FT                   /cell_line="MDA0000147"
FT                   /cell_line="MDA0000148"
FT   CDS             <1..270
FT                   /codon_start=3
FT                   /partial
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*04:17:02"
FT                   /product="MHC Class II HLA-DRB1*04:17:02 sequence"
FT                   /translation="RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAV
FT                   TELGRPSAEYWNSQKDLLEQRRAEVDTYCRHNYGVGESFTVQRR"
FT   exon            1..270
FT                   /number="2"
SQ   Sequence 270 BP; 60 A; 65 C; 98 G; 47 T; 0 other;
     cacgtttctt ggagcaggtt aaacatgagt gtcatttctt caacgggacg gagcgggtgc        60
     ggttcctgga cagatacttc tatcaccaag aggagtacgt gcgcttcgac agcgacgtgg       120
     gggagtaccg ggcggtgacg gagctggggc ggcctagcgc cgagtactgg aacagccaga       180
     aggacctcct ggagcagagg cgggccgagg tggacaccta ctgcagacac aactacgggg       240
     ttggtgagag cttcacagtg cagcggcgag                                        270
//