Dbfetch
ID HLA04343; SV 2; standard; DNA; HUM; 3352 BP. XX AC HLA04343; XX SV HLA04343.2 XX DT 30-SEP-2009 (Rel. 2.27.0, Created, Version 1) DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 2) XX DE HLA-C*07:89, Human MHC Class I sequence XX KW Human MHC; HLA; Class I; HLA-C; Allele; HLA-C*07:89; XX OS Homo Sapiens (human) OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates; OC Catarrhini; Hominidae; Homo. XX CC -------------------------------------------------------------------------- CC IPD-IMGT/HLA Release Version 3.55.0 CC -------------------------------------------------------------------------- CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative CC Commons Attribution-NoDerivs License, see; CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details. CC -------------------------------------------------------------------------- XX RN [1] RP 1-3352 RX PUBMED; 24571476. RA Hernandez-Frederick CJ, Giani AS, Cereb N, Silva-Gozalez R, Pingel J, RA Schmidt AH, Ehninger G, Yang SY; RT "Identification of 2127 new HLA class I alleles in potential stem cell RT donors from Germany, the United States and Poland."; RL Tissue Antigens 83:184-189(2014). XX CC -------------------------------------------------------------------------- CC The sequence below is the official allele sequence as approved by the CC WHO Nomenclature Committee for Factors of the HLA System. CC Any cross references may differ from the sequence shown below. CC -------------------------------------------------------------------------- XX DR EMBL; FJ614607; FJ614607.1. DR EMBL; FJ976793; FJ976793.1. DR EMBL; JQ824566; JQ824566.1. DR EMBL; KP116923; KP116923.1. DR EMBL; LT596641; LT596641.1. XX FH Key Location/Qualifiers FH FT source 1..3352 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT /ethnic="Oceanian, Undefined" FT /cell_line="AN00191" FT /cell_line="BY01238" FT /cell_line="HG00000704" FT /cell_line="HG00006731" FT /cell_line="HN-05830-4" FT CDS join(281..353,484..753,1004..1279,1867..2142,2267..2386, FT 2825..2857,2965..3012,3177..3181) FT /codon_start=1 FT /gene="HLA-C" FT /allele="HLA-C*07:89" FT /product="MHC Class I HLA-C*07:89 sequence" FT /translation="MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPR FT FISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRN FT LRGYYNQSKDGSHTLQRMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA FT AQITQRKLEAARAAEQLRAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRY FT TCHMQHEGLQEPLTLSWEPSSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGG FT KGGSCSQAACSNSAQGSDESLITCKA" FT UTR 1..280 FT exon 281..353 FT /number="1" FT intron 354..483 FT /number="1" FT exon 484..753 FT /number="2" FT intron 754..1003 FT /number="2" FT exon 1004..1279 FT /number="3" FT intron 1280..1866 FT /number="3" FT exon 1867..2142 FT /number="4" FT intron 2143..2266 FT /number="4" FT exon 2267..2386 FT /number="5" FT intron 2387..2824 FT /number="5" FT exon 2825..2857 FT /number="6" FT intron 2858..2964 FT /number="6" FT exon 2965..3012 FT /number="7" FT intron 3013..3176 FT /number="7" FT exon 3177..3181 FT /number="8" FT UTR 3182..3352 SQ Sequence 3352 BP; 621 A; 992 C; 1040 G; 699 T; 0 other; gatcaggacg aagtcccagg tcccggacgg ggctctcagg gtctcaggct ccaagggccg 60 tgtctgcatt ggggaggcgc cgcgttgggg attctccact cccctgagtt tcacttctcc 120 caacctgcgt cgggtccttc ttcctgaata ctcatgacgc gtccccaatt cccactccca 180 ttgggtgtcg ggttctagag aagccaatca gcgtctccgc agtcccggtt ctaaagtccc 240 cagtcaccca cccggactca cattctcccc agaggccgag atgcgggtca tggcgccccg 300 agccctcctc ctgctgctct cgggaggcct ggccctgacc gagacctggg cctgtgagtg 360 cggggttggg agggaagcgg cctctgcgga gaggagcgag gggcccgccc ggcgagggcg 420 caggacccgg ggagccgcgc agggaggtgg gtcgggcggg tctcagcccc tcctcgcccc 480 caggctccca ctccatgagg tatttcgaca ccgccgtgtc ccggcccggc cgcggagagc 540 cccgcttcat ctcagtgggc tacgtggacg acacgcagtt cgtgcggttc gacagcgacg 600 ccgcgagtcc gagaggggag ccgcgggcgc cgtgggtgga gcaggagggg ccggagtatt 660 gggaccggga gacacagaac tacaagcgcc aggcacaggc tgaccgagtg agcctgcgga 720 acctgcgcgg ctactacaac cagagcaagg acggtgagtg accccggccc ggggcgcagg 780 tcacgacccc tccccatccc ccacggacgg cccgggtcgc cccgagtctc cccgtctgag 840 atccacccca aggtggatct gcggaacccg cccagaccct cgaccggaga gagccccagt 900 cgcctttacc cggtttcatt ttcggtttag gccaaaatcc ccgcgggttg gtcggggcgg 960 ggcggggctc gggggactgg gctgaccgcg ggggcggggc cagggtctca caccctccag 1020 aggatgtatg gctgcgacct ggggcccgac gggcgcctcc tccgcgggta tgaccagtcc 1080 gcctacgacg gcaaggatta catcgccctg aacgaggacc tgcgctcctg gaccgccgcg 1140 gacaccgcgg ctcagatcac ccagcgcaag ttggaggcgg cccgtgcggc ggagcagctg 1200 agagcctacc tggagggcac gtgcgtggag tggctccgca gatacctgga gaacgggaag 1260 gagacgctgc agcgcgcagg taccaggggc agtggggagc cttccccatc tcctatagat 1320 ctcccgggat ggcctcccac gaggagggga ggaaaatggg atcagcactg gaatatcgcc 1380 ctcccttgaa tggagaatgg catgagtttt cctgagtttc ctctgagggc cccctctgct 1440 ctctaggaca attaagggat gaagtctctg aggaaatgga ggggaagaca gtccctggaa 1500 tactgatcag gggtctcctt tgaccacttt gaccactgca gcagctgtgg tcaggctgct 1560 gacctttctc tcaggccttg ttctctgcct cacactcaat gtgtctgaag gtttgattcc 1620 agcttttctg agtcctgcag cctccactca ggtcaggacc agaagtcgct gttcctccct 1680 cagagactag aactttccaa tgaataggag attatcccag gtgcctgtgt ccaggctggc 1740 gtctgggttc tgtgccgcct tccccacccc aggtgtcctg tccattctca ggatggtcac 1800 atgggcgctg ctggagtgtc ccaagagaga tgcaaagtgt ctgaattttc tgactcttcc 1860 cgtcagaacc cccaaagaca cacgtgaccc accaccccct ctctgaccat gaggccaccc 1920 tgaggtgctg ggccctgggc ttctaccctg cggagatcac actgacctgg cagcgggatg 1980 gggaggacca gacccaggac accgagcttg tggagaccag gccagcagga gatggaacct 2040 tccagaagtg ggcagctgtg gtggtgcctt ctggacaaga gcagagatac acgtgccata 2100 tgcagcacga ggggctgcaa gagcccctca ccctgagctg gggtaaggag gggaatgggg 2160 ggtcacatct cttatcagag aaagcagaag tccttctgga gcccttcagc cgggtcaggg 2220 ctgaggcttg ggggtcaggg cccctcacct tctcctcctt tcccagagcc atcttcccag 2280 cctaccatcc ccatcatggg catcgttgct ggcctggctg tcctggttgt cctagctgtc 2340 cttggagctg tggtcaccgc tatgatgtgt aggaggaaga gctcaggtag ggaaggggtg 2400 aagagcgggg tctgggtttt cttgtcccac tgggagtttc aagccccagg tagaagtgtg 2460 ccccgccttg ttactggaag caccatccac acatgggcca tcccagcctg ggaccctgtg 2520 tgccagcact tactcttttg tgacacatgt gacaatgaag gacggatgta tcaccttgat 2580 gattatggtg ttggggtcct gattccagca ttcatgagtc aggggaaggt ccctgctaag 2640 gacagacctt aggagggcag ttggtccaga acccacaact gctttcccca tgtttcctga 2700 tcctgccctg ggtctgcagt cgtagttctg gaaacttctc ttgggtccaa gactaggagg 2760 ttcccctaag atcacatggc cctgcctcct cccagtcccc tcatagggca ttttcttccc 2820 acaggtggaa aaggagggag ctgctctcag gctgcgtgta agtgatggcg gcgggcgtgt 2880 ggaggagctc acctactcca taattcctct tgtcccacat ctcctgcggg ctctgaccag 2940 gtcttttttt ttgttctacc ccaggcagca acagtgccca gggctctgat gagtctctca 3000 tcacttgtaa aggtgagatt ctggggagct gaagtggtcg ggggtggggc agagggaaaa 3060 ggcctgggta atggggattc tttgattggg acgtttcgag tgtgtggtgg gccgttcaga 3120 gtgtcatcac ttaccatgac tgacctgaat ttgttcatga ctattgtgtt ctgtagcctg 3180 agacagctgc ctgtgtggga ctgagatgca ggatttcttc acacctctcc tttgtgactt 3240 caagagcctc tggcatctct ttctgcaaag gcgtctgaat gtgtctgcgt tcctgttagc 3300 ataatgtgag gaggtggaga gacagcccac ccccgtgtcc accgtgaccc ct 3352 //