Dbfetch
ID HLA04254; SV 1; standard; DNA; HUM; 1023 BP. XX AC HLA04254; XX SV HLA04254.1 XX DT 30-SEP-2009 (Rel. 2.27.0, Created, Version 1) DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 1) XX DE HLA-C*04:01:11, Human MHC Class I sequence (partial) XX KW Human MHC; HLA; Class I; HLA-C; Allele; HLA-C*04:01:11; XX OS Homo Sapiens (human) OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates; OC Catarrhini; Hominidae; Homo. XX CC -------------------------------------------------------------------------- CC IPD-IMGT/HLA Release Version 3.55.0 CC -------------------------------------------------------------------------- CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative CC Commons Attribution-NoDerivs License, see; CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details. CC -------------------------------------------------------------------------- XX RN [1] RP 1-1023 RX PUBMED; 20860585. RA Lazaro AM, Xiao Y, Masaberg C, Tu B, Ng J, Hurley CK, Posch PE; RT "Seventy-eight novel HLA class I and II alleles identified during routine RT registry typing in 2008 and 2009."; RL Tissue Antigens 77:54-61(2011). XX CC -------------------------------------------------------------------------- CC The sequence below is the official allele sequence as approved by the CC WHO Nomenclature Committee for Factors of the HLA System. CC Any cross references may differ from the sequence shown below. CC -------------------------------------------------------------------------- XX DR EMBL; GQ401211; GQ401211.1. DR EMBL; GQ985505; GQ985505.1. XX FH Key Location/Qualifiers FH FT source 1..1023 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT /ethnic="African descent, Undefined" FT /cell_line="HN-05538-3" FT /cell_line="NT01114" FT CDS join(<1..270,271..546,547..822,823..942,943..975,976..1023) FT /codon_start=3 FT /partial FT /gene="HLA-C" FT /allele="HLA-C*04:01:11" FT /product="MHC Class I HLA-C*04:01:11 sequence" FT /translation="SHSMRYFSTSVSWPGRGEPRFIAVGYVDDTQFVRFDSDAASPRGE FT PREPWVEQEGPEYWDRETQKYKRQAQADRVNLRKLRGYYNQSEDGSHTLQRMFGCDLGP FT DGRLLRGYNQFAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGTC FT VEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQWDGED FT QTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWKPSSQPTI FT PIVGIVAGLAVLAVLAVLGAMVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDESLIACK FT " FT exon 1..270 FT /number="2" FT exon 271..546 FT /number="3" FT exon 547..822 FT /number="4" FT exon 823..942 FT /number="5" FT exon 943..975 FT /number="6" FT exon 976..1023 FT /number="7" SQ Sequence 1023 BP; 208 A; 299 C; 351 G; 165 T; 0 other; gctcccactc catgaggtat ttctccacat ccgtgtcctg gcctggccgc ggggagcccc 60 gcttcatcgc agtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg 120 cgagtccaag aggggagccg cgggagccgt gggtggagca ggaggggccg gagtattggg 180 accgggagac acagaagtac aagcgccagg cacaggctga ccgagtgaac ctgcggaaac 240 tgcgcggcta ctacaaccag agcgaggacg ggtctcacac cctccagagg atgtttggct 300 gcgacctggg gccggacggg cgcctcctcc gcgggtataa ccagttcgcc tacgacggca 360 aggattacat cgccctgaac gaggatctgc gctcctggac cgccgcggac acggcggctc 420 agatcaccca gcgcaagtgg gaggcggccc gtgaggcgga gcagcggaga gcctacctgg 480 agggcacgtg cgtggagtgg ctccgcagat acctggagaa cgggaaggag acgctgcagc 540 gcgcggaaca cccaaagaca cacgtgaccc accatcccgt ctctgaccat gaggccaccc 600 tgaggtgctg ggccctgggc ttctaccctg cggagatcac actgacctgg cagtgggatg 660 gggaggacca aactcaggac accgagcttg tggagaccag gccagcagga gatggaacct 720 tccagaagtg ggcagctgtg gtggtgcctt ctggagaaga gcagagatac acgtgccatg 780 ttcagcacga ggggctgccg gagcccctca ccctgagatg gaagccgtct tcccagccca 840 ccatccccat cgtgggcatc gttgctggcc tggctgtcct ggctgtccta gctgtcctag 900 gagctatggt ggctgttgtg atgtgtagga ggaagagctc aggtggaaaa ggagggagct 960 gctctcaggc tgcgtccagc aacagtgccc agggctctga tgagtctctc atcgcttgta 1020 aag 1023 //