Dbfetch
ID HLA03745; SV 3; standard; DNA; HUM; 7012 BP. XX AC HLA03745; XX SV HLA03745.3 XX DT 30-APR-2009 (Rel. 2.26.0, Created, Version 1) DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 3) XX DE HLA-DQB1*03:25:01, Human MHC Class II sequence XX KW Human MHC; HLA; Class II; HLA-DQB1; Allele; HLA-DQB1*03:25:01; XX OS Homo Sapiens (human) OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates; OC Catarrhini; Hominidae; Homo. XX CC -------------------------------------------------------------------------- CC IPD-IMGT/HLA Release Version 3.55.0 CC -------------------------------------------------------------------------- CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative CC Commons Attribution-NoDerivs License, see; CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details. CC -------------------------------------------------------------------------- XX RN [1] RP 1-7012 RX PUBMED; 36565026. RA Balas A, Moreno-Hidalgo MA, Alenda R, Garcia-Sanchez F, Vicario JL; RT "Full-length characterization of the HLA-DQB1*03:25:01 allele in two RT Amerindian individuals."; RL HLA 101:705-706(2023). XX CC -------------------------------------------------------------------------- CC The sequence below is the official allele sequence as approved by the CC WHO Nomenclature Committee for Factors of the HLA System. CC Any cross references may differ from the sequence shown below. CC -------------------------------------------------------------------------- XX DR EMBL; EU770203; EU770203.1. DR EMBL; LT575499; LT575499.1. DR EMBL; OP620043; OP620043.1. DR EMBL; OP821699; OP821699.1. XX FH Key Location/Qualifiers FH FT source 1..7012 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT /ethnic="Hispanic or Latin American, Undefined" FT /cell_line="3154339" FT /cell_line="8155592" FT /cell_line="AN00015" FT /cell_line="ZMK01" FT CDS join(417..525,1970..2239,4770..5051,5567..5677,6794..6807) FT /codon_start=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:25:01" FT /product="MHC Class II HLA-DQB1*03:25:01 sequence" FT /translation="MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKG FT MCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPLGRLDAEYWNSQKDILEEDR FT ASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW FT FRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRA FT QSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGLLH" FT UTR 1..416 FT exon 417..525 FT /number="1" FT intron 526..1969 FT /number="1" FT exon 1970..2239 FT /number="2" FT intron 2240..4769 FT /number="2" FT exon 4770..5051 FT /number="3" FT intron 5052..5566 FT /number="3" FT exon 5567..5677 FT /number="4" FT intron 5678..6159 FT /number="4" FT exon 6160..6183 FT /number="5" FT /pseudo FT intron 6184..6793 FT /number="5" FT exon 6794..6807 FT /number="6" FT UTR 6808..7012 SQ Sequence 7012 BP; 1781 A; 1615 C; 1690 G; 1926 T; 0 other; acttaatttg ccctactgaa agaatcccaa gtataaaaac aaccagtttt taatcaatat 60 tacaaagatg tttactgttg aatcgcattt ttctttggct tcttaaaatc ccttaggcat 120 tcaatcttca gctcttctat aattgagagg aagttttcac ctcaaatgtt catccagtgc 180 aatttgaaga cgtcacagtg ccagggactg gattgagaac cttcacaaaa aaaaaatgtc 240 tgcctagaga cagattaggt ccttcagctc cagtgctgat tggttccttt ccaaaggacc 300 atccaatcct gccacgcagg gaaacatcca caggttttta ttctttctgc caggtacatc 360 agatccatca ggtccaagct gtgttgacta ccactacttt tcccttcgtc tcaattatgt 420 cttggaagaa ggctttgcgg atccctggag gccttcgggt agcaactgtg accttgatgc 480 tggcgatgct gagcaccccg gtggctgagg gcagagactc tcccggtaag tgcagggcca 540 ctgctctcca gagccgccac tctgggaaca ggctctcctt gggctggggt agggggatgg 600 tgatctccat gatctcggac acaatctttc atcaacattt cctctctttg gggaaagaga 660 acgatgttgc attcccattt atcttttagt gatgaggtga gcacagtcgg atccccatcc 720 tacaggctta agcctggaag agaaggagag aggagaggaa agaggagaca aagtgtacat 780 ttactaccag tgacaggaca aagtgagcat ggggttattt ttgaagatac gaatttctcc 840 agagacacag caggatttgt catttaggcg tgccccaaga ctttgcctgg actaaatatt 900 atgggatcct gcattgggaa atgtaaggca gcaatggtgt ctgtagtctc cgtatttgag 960 gaaaagttgt ctgtattcct gactgactgg aacgtttgtg gaggcaaaat cttggtactg 1020 aaggaagctg actggatgac cacagacagg gagtcttcag gtttcactga tttatgggca 1080 aatggtgact tgagtgggat tcagagaccc gagttggtgg actgaattta gcagaaagga 1140 ggatgtaaag aagggaaata acatatattg tgaaaccact catttcagac acagcacaat 1200 actttacata aattctctct cactccttct aacatcctgt gtgtagatat catgattttc 1260 ttttacacaa ttatacttgt gatatggata ttctgttaca tacctgccct agctggtgac 1320 tgccacagct taattggaat ctagtttatc aaattcaaaa gcttgtgctc tttccatgaa 1380 taaatgtttc tttctaggac tcggaggtgt aggtcctttc taacataaaa gtgagtgaac 1440 ctcacatggc attcggaagg gtaaatccag gcatgggaag ggaggtattt taccgaggga 1500 ccaagagaat acgcatatca gaacgaggac aggcttaatt tctggacccg tctcatcatt 1560 cccttgaact cacaggttta tgtggataat tttatctctg aggtttccag gagctcaatg 1620 gaaaatggga tttcatgcga gagcgccctg attccctcta agtgcagagg tctatgtaaa 1680 atcagcccga ctgcctcttc cctcggttca caggctccgg cagggacagg gctttccgcc 1740 ctttcctgcc tgcaggaagg cggattcccg aagcccccag agagggcggg cagggctggg 1800 cagagccgcc gggcggatca caagtctgga gcgccaggca cgggcgggcg ggaactggag 1860 gtcgcgcggg cggttccaca gctccgggcc gggtcagggc ggcggctgcg ggggcggccg 1920 ggctggggcc gggccggggc ctgactgacc ggccggtgat tccccgcaga ggatttcgtg 1980 taccagttta agggcatgtg ctacttcacc aacgggacgg agcgcgtgcg tcttgtgacc 2040 agatacatct ataaccgaga ggagtacgca cgcttcgaca gcgacgtggg ggtgtatcgg 2100 gcggtgacgc cgctggggcg gcttgacgcc gagtactgga atagccagaa ggacatcctg 2160 gaggaggacc gggcgtcggt ggacaccgta tgcagacaca actaccagtt ggagctccgc 2220 acgaccttgc agcggcgagg tgagcgtcgt cgcccgtctg cgaggcccat ccttggcagg 2280 ggcccagagt ctctgcgcca ggaggggcga agggggcgcg gcctctggaa cctgagcctt 2340 gttcgttcca ccccggctga caggaggagg cggtgggggt gctgggggct ggtgcatcgg 2400 aggggcaggg acctagggca gagcagggga acaggcagag ttggtcaagc tgcctagttt 2460 cgccccatcc tccccgtccg tcggcctcgc cctctgctct gcacgttctt gcctcgtgcc 2520 ttatgcgttt gcctcctcgt gccttacctt tactaagcag ttctctctgc ccccaatttc 2580 cgccctcttc ccctgcccgc ccgcccggct agcactgccg cacccggcaa ggtccaccta 2640 cacagctcat gcagtgggaa gcttcagact tggcctgatg gagttagggc tgccccacaa 2700 ctgcgcgcag ggcatccagc aattacagtt gtcaaataag atattttgac ttttgacttc 2760 aaattattat tcatcgtaat tctgttttct taaatggctc tcattcatgg cggagctctt 2820 tgagatgaga gtgttttaat cattgcatgc ctggtatctg acacattgac tggcatgtgg 2880 tatgagctca atgatcttct gttaaattaa tgaataaatg tgctcagctg ccaatccact 2940 taggctcaag ggaaagcaga ggataaatag agccttaaaa atggactttt attaattatt 3000 ttctgtcatt ttgcttaatt ctttaaagta aactcttatt gacttggatc ttaatagagt 3060 ttgtgaatac aaagtctgag gaaaaaagtg tttgctaaaa ataaaaacaa cacttgaatg 3120 atgtttgtaa ggcagtttta atttcttaga aaagctgaac aaatggcaca atgcaaagag 3180 cagaagtttt ggaataaata gattgaagca attaaattat tggataaaaa tagtttcagg 3240 ttgcttttgg cttaggttct cccctccccc catcactatc cacttcagga ataaacattc 3300 tgaaagtcaa ttttacccat ttagtgagca cttatttcta gacagttacc ttatcaaata 3360 ccgtctatgt tacgtcattt aatctcacag ttgcctgtgc attagagatt agcatcacca 3420 ctttatatat cctaatatta gtacatgaca aacactttaa gtaatcagcc cacaagtact 3480 caccaagacc ttaagcctcc caaagtacac aatattcttt atgttcttca ctacacatct 3540 atagagtcaa agggacataa agccttgtta aagccagttt tgactagaag cagcaatgag 3600 tctcttcctg tttgatctcc atgttaatgg gacaaaatga tactttcaag gcattgaaaa 3660 tttatgatta atcaatccct agtctgactc cactgttacc tatgcagatt cacaaaactt 3720 ttagtttact ttaaactccc ttgccttctt ttgactcaca tcgtagtgcc agcaagtact 3780 tacatttttg ctattttggt tctatttcca taaaatttat tttatcatct tttctcataa 3840 gtttgtgccc tctattttac tcccagtctg tgtaagatga acaaatctta taaagccaca 3900 tagctgactg tgatttcagg tggactccag gaaggagaac caaagaaaag ttcaagtcca 3960 agcagaaacc gtgattcctt ccggatgatg gctcaagagt gccttttaat tggggtgcaa 4020 cctgctgacc tcagcaaatc tcagctatat ttatatgttc acattacagg ctcattaacc 4080 taggctgatc tctgcaagga tctcagaata ttttctacag ataacataca tgataatatc 4140 tgatttcagg acaaaaaagt aattctcaat agcaagggaa tggagtaggg tagacagcta 4200 gtaattaaac tcacttgtat gttaaaaata aattaaggaa aaaaagaaaa tgagagaaca 4260 tattactaaa taaagaaagc atacattaaa tatttactat agtttcacac taagagaata 4320 aaggaaatgc aataaagtgg cctgaaagat aaaggatgag atgtgtaaag agacagggaa 4380 agatgtgtca tttttttact atgagcagca gtctgagaag ataaaggaat cgagttatgg 4440 gcaaacatga tgtttgatca gtgttatttg ttttgaaggc ctgcctactt ttgtttcaaa 4500 tattacagac ttttgaaatc acattctttt tgttttttgc tgtctgttac tagatcgcac 4560 attctgtaaa ggcagggacc atggtatgtt gtttatcttt ggattctcag tgattgtcat 4620 atttatattt gttgaatgaa tcttaatcca agacttggac tccaggtatc tttccactct 4680 ggttccaagg agggaccatt cccaatggta gacgtgctgt gtggtctcac atctcactcc 4740 tgtcttttcc tgtctgttac tgccctcagt ggagcccaca gtgaccatct ccccatccag 4800 gacagaggcc ctcaaccacc acaacctgct ggtctgctca gtgacagatt tctatccagc 4860 ccagatcaaa gtccggtggt ttcggaatga ccaggaggag acaactggcg ttgtgtccac 4920 cccccttatt aggaacggtg actggacctt ccagatcctg gtgatgctgg aaatgactcc 4980 ccagcgtgga gacgtctaca cctgccacgt ggagcacccc agcctccaga accccatcat 5040 cgtggagtgg cgtaagggga tattgagttt ctgttactat gggccccaca agacaaaggg 5100 cagagctcct tctgacccat tccttcccat ctcttatccc tgatgtcact actgagctgg 5160 ggatcacagg agactagagc acctcttgct ccatggcaag tgcatcagaa gaatcctgat 5220 ctcatcacct ttccagatgc tagggaaatt attctacgta ctgtttctcc agatcccagt 5280 cctgatagct cggagggact tattattagg gctggtgact gggatcttag ggtttaaggt 5340 atggatgagt tcctgaggag tggagatctg cttccccgct ctctcaccta ctcactgtac 5400 cgaaggacct attggctggc tttcccctcc cttaggggtg gtctgaatgg aggactaggt 5460 tcctttgaca ctttcacctc ctgcatctca gactggactt cagctcctca gcagggatgc 5520 tatggggtgt agggacaaac actgacactc aggctctgct tcttaggggc tcagtctgaa 5580 tctgcccaga gcaagatgct gagtggcatt ggaggcttcg tgctggggct gatcttcctc 5640 gggctgggcc ttattatcca tcacaggagt cagaaaggtg aggaacccca agggaaaagg 5700 ggaagatggg ctgtgaccca gaccctctgt tcagggaggt cctgtctcta gatgtggctc 5760 tttcctcctg accctgagag gaagaaaact gagctggagg tgggaggaga caggacaaga 5820 ttggaggagg cactggaatc tgattttact agttgaaagg tagccctgtc acacaggtga 5880 ctgatagagc ttattccagg atgtacttac cattcatcgt ctcattggct cctttccaaa 5940 agcttcctcc attaagaggg tcagagcctt ggcctccttg ccttctagtg acaattttct 6000 ttgttttagg ggattttaaa ttagggtact taaggccttg aagaacatga gtggtaagag 6060 aatataactc taattaagtc acatgtgtca ttttcctttg gggtgagaga gtggctgttt 6120 gtgtaatgag acctttctct gcataacttc cttttgtaag acctcaaggg cctccaccag 6180 caggtgatat ttcagccatg agccagtgtg ggggggcaca ggtgtaagag ggaagagcat 6240 gagctgaatg cacctgacca caatggtctc tgttcatggt atatttgctg ctatgaggat 6300 caagacttag ggtcgaagtt tgccagtttc taggaatctc cagaggttgt tccccagaac 6360 caagccttaa ctttggtggt atcttcttgt gaaatgtgaa gccagaacca cagcttaaat 6420 gttagacaag aggatgatgc ccactttgtg ccacatgttg gtggctactg cctgtaggca 6480 ttttccagtg actgaaagag gctgctagtg gtagggatga ggtatcatcc aattttctaa 6540 aaagattgaa cccttcatat tccccagaag agtaacagct gttccaccac ttcccacaca 6600 tctgcatcaa gctgaagttc tgtgtcctca tgagctgatt tcacctttgc acagatcttg 6660 cgggaggtga cgataataca ttctggacct cagctttctc tgtctgaagc tgcagggggc 6720 ccctgagggg tgggggagat tgcaggccca ccagcgtacc ctgtgctgat catccctctt 6780 ctctcttctt cagggctcct gcactgactc ctgagactat tttaactggg attggttatc 6840 acttttctgt aacgcctgct tgtccctgcc cagaattccc agctgcctgt gtcagcctgt 6900 cccccgagat cagagtccta cagtggctgt cacgcagcca ccaggtcatc tcctttcatc 6960 cccacctcga ggctgatggc tgtgaccctg cttcctgcac tgacccagag cc 7012 //