Dbfetch
ID HLA03739; SV 2; standard; DNA; HUM; 3347 BP. XX AC HLA03739; XX SV HLA03739.2 XX DT 31-MAR-2009 (Rel. 2.27.0, Created, Version 1) DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 2) XX DE HLA-C*02:25Q, Human MHC Class I sequence XX KW Human MHC; HLA; Class I; HLA-C; Allele; HLA-C*02:25Q; XX OS Homo Sapiens (human) OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates; OC Catarrhini; Hominidae; Homo. XX CC -------------------------------------------------------------------------- CC IPD-IMGT/HLA Release Version 3.55.0 CC -------------------------------------------------------------------------- CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative CC Commons Attribution-NoDerivs License, see; CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details. CC -------------------------------------------------------------------------- XX RN [1] RP 1-3347 RX PUBMED; 24571476. RA Hernandez-Frederick CJ, Giani AS, Cereb N, Silva-Gozalez R, Pingel J, RA Schmidt AH, Ehninger G, Yang SY; RT "Identification of 2127 new HLA class I alleles in potential stem cell RT donors from Germany, the United States and Poland."; RL Tissue Antigens 83:184-189(2014). XX RN [2] RP 1-3347 RX PUBMED; 28547825. RA Albrecht V, Zweiniger C, Surendranath V, Lang K, Schofl G, Dahl A, Winkler RA S, Lange V, Bohme I, Schmidt AH; RT "Dual redundant sequecing strategy: Full-length gene characterisation of RT 1056 novel and confirmatory HLA alleles."; RL HLA 90:79-87(2017). XX CC -------------------------------------------------------------------------- CC The sequence below is the official allele sequence as approved by the CC WHO Nomenclature Committee for Factors of the HLA System. CC Any cross references may differ from the sequence shown below. CC -------------------------------------------------------------------------- XX DR EMBL; FJ594546; FJ594546.1. DR EMBL; GQ449662; GQ449662.1. DR EMBL; HQ644395; HQ644395.1. DR EMBL; LT599303; LT599303.1. XX FH Key Location/Qualifiers FH FT source 1..3347 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT /ethnic="Undefined" FT /cell_line="DKMS-LSL-C-1246" FT /cell_line="HG00001029" FT /cell_line="HN-24492-7" FT /cell_line="HN-24736-9" FT CDS join(284..356,487..756,1002..1277,1865..2140,2262..2381, FT 2821..2853,2961..3008,3172..3176) FT /codon_start=1 FT /gene="HLA-C" FT /allele="HLA-C*02:25Q" FT /product="MHC Class I HLA-C*02:25Q sequence" FT /translation="MRVMAPRTLLLLLSGALALTETWACSHSMRYFYTAVSRPSRGEPH FT FIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVNLRK FT LRGYYNQSEAGSHTLQRMYGYDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAAREAEQWRAYLEGECVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE FT ATLRCWALGFYPTEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIACKA" FT UTR 1..283 FT exon 284..356 FT /number="1" FT intron 357..486 FT /number="1" FT exon 487..756 FT /number="2" FT intron 757..1001 FT /number="2" FT exon 1002..1277 FT /number="3" FT intron 1278..1864 FT /number="3" FT exon 1865..2140 FT /number="4" FT intron 2141..2261 FT /number="4" FT exon 2262..2381 FT /number="5" FT intron 2382..2820 FT /number="5" FT exon 2821..2853 FT /number="6" FT intron 2854..2960 FT /number="6" FT exon 2961..3008 FT /number="7" FT intron 3009..3171 FT /number="7" FT exon 3172..3176 FT /number="8" FT UTR 3177..3347 SQ Sequence 3347 BP; 631 A; 983 C; 1038 G; 695 T; 0 other; gatcaggacg aagtcccagg tcccgggcgg ggctctcagg gtctcaggct ccaagggccg 60 tgtctgcact ggggaggcgc cgcgttgagg attctccact cccctgagtt tcacttcttc 120 tcccaacctg cgacgggtcc ttcttcctga atactcatga cgcgtcccca attcccactc 180 ccattgggtg tcgggttcta gagaagccaa tcagcgtctc cgcagtcccg gttctaaagt 240 ccccagtcac ccacccggac tcggattctc cccagacgcc gagatgcggg tcatggcgcc 300 ccgaaccctc ctcctgctgc tctcgggagc cctggccctg accgagacct gggcctgtga 360 gtgcggggtt gggagggaaa cggcctctgc ggagaggagc gaggggcccg cccggcgagg 420 gcgcaggacc cggggagccg cgcagggagg agggtcgggc gggtctcagc ccctcctctc 480 ccccaggctc ccactccatg aggtatttct acaccgctgt gtcccggccc agccgcggag 540 agccccactt catcgcagtg ggctacgtgg acgacacgca gttcgtgcgg ttcgacagcg 600 acgccgcgag tccaagaggg gagccgcggg cgccgtgggt ggagcaggag gggccggagt 660 attgggaccg ggagacacag aagtacaagc gccaggcaca gactgaccga gtgaacctgc 720 ggaaactgcg cggctactac aaccagagcg aggccggtga gtgaccccgg cccggggcgc 780 aggtcacgac ccctccccat cccccacgga cggcccgggt cgccccgagt ctccgggtct 840 gagatccacc ccgaggctgc ggaacccgcc cagaccctcg accggagaga gccccagtca 900 cctttacccg gtttcatttt cagtttaggc caaaatcccc gcgggttggt cggggctggg 960 gcggggctcg ggggacgggc tgaccacggg ggcggggcca gggtctcaca ccctccagag 1020 gatgtacggc tacgacctgg ggcccgacgg gcgcctcctc cgcgggtatg accagtccgc 1080 ctacgacggc aaggattaca tcgccctgaa cgaggacctg cgctcctgga ccgccgcgga 1140 cacagcggct cagatcaccc agcgcaagtg ggaggcggcc cgtgaggcgg agcagtggag 1200 agcctacctg gagggcgagt gcgtggagtg gctccgcaga tacctggaga acgggaagga 1260 gacgctgcag cgcgcgggta ccaggggcag tggggagcct tccccatctc ctgtagatct 1320 cccgggatgg cctcccacga ggaggggagg aaaatgggat cagcgctaga atatcgccct 1380 cccttgaatg gagaatggga tgagttttcc tgagtttcct ctgagggccc cctctgctct 1440 ctaggacaat taagggatga agtccttgag gaaatggagg ggaagacagt ccctggaata 1500 ctgatcaggg gtcccctttg accactttga ccactgcagc agctgtggtc aggctgctga 1560 cctttctctc aggccttgtt ctctgcctca cgctcaatgt gtttgaaggt ttgattccag 1620 cttttctgag tccttcggcc tccactcagg tcaggaccag aagtcgctgt tcctccctca 1680 gagactagaa ctttccaatg aataggagat tatcccaggt gcctgtgtcc aggctggcgt 1740 ctgggttctg tgcccccttc cccaccccag gtgtcctgtc cattctcagg atagtcacat 1800 gggcgctgtt ggagtgtcgc aagagagata caaagtgtct gaattttctg actcttcccg 1860 tcagaacacc caaagacaca cgtgacccac catcccgtct ctgaccatga ggccaccctg 1920 aggtgctggg ccctgggctt ctaccctacg gagatcacac tgacctggca gcgggatggc 1980 gaggaccaaa ctcaggacac cgagcttgtg gagaccaggc cagcaggaga tggaaccttc 2040 cagaagtggg cagctgtggt ggtgccttct ggagaagagc agagatacac gtgccatgtg 2100 cagcacgagg ggctgccgga gcccctcacc ctgagatggg gtaaggaggg ggatgagggg 2160 tcatgtgtct tctcagggaa agcagaagtc ctggagccct tcagctgggt cagggctgag 2220 gcttgggggt cagggcccct caccttcccc tcctttccca gagccatctt cccagcccac 2280 catccccatc gtgggcatcg ttgctggcct ggctgtcctg gctgtcctag ctgtcctagg 2340 agctgtggtg gctgttgtga tgtgtaggag gaagagctca ggtagggaag gggtgaggag 2400 tggggtctgg gttttcttgt cccactggga gtttcaagcc ccaggtagaa gtgtgcccca 2460 cctcgttact ggaagcacca tccacacatg ggccatccca gcctgggacc ctgtgtgcca 2520 gcacttactc tgttgtgaag cacatgacaa tgaaggacag atgtatcacc ttgatgatta 2580 tggtgttggg gtccttgatt ccagcattca tgagtcaggg gaaggtccct gctaaggaca 2640 gaccttagga gggcagttgc tccagaaccc acagctgctt tccccgtgtt tcctgatcct 2700 gccctgggtc tgcagtcata gttctggaaa cttctcttgg gtccaagact aggaggttcc 2760 cctaagattg catggccctg cctcctccct gtcccctcac agggcatttt cttcccacag 2820 gtggaaaagg agggagctgc tctcaggctg cgtgtaagtg atggcggcag gcgtgtggag 2880 gagctcaccc accccataat tcctcttgtc ccacatctcc tgcgggctct gaccaggtct 2940 ttttttttgt tctaccccag ccagcaacag tgcccagggc tctgatgagt ctctcatcgc 3000 ttgtaaaggt gagattctgg gagctgaagt ggtcgggggt ggggcagagg gaaaaggcct 3060 aggtaatggg gatcctttga tagggacgtt tcgaatgtgt ggtgagctgt tcagagtgtc 3120 atcacttacc atgactgacc tgaatttgtt catgactatt gtgttctgta gcctgagaca 3180 gctgcctgtg tgggactgag atgcaggatt tcttcacacc tctcctttgt gacttcaaga 3240 gcctctggca tctctttcta caaaggcatc tgaatgtgtc tgcgttcctg ttagcataat 3300 gtgaggaggt ggagagacag cccacccccg tgtccaccgt gacccct 3347 //