Dbfetch
ID HLA03698; SV 2; standard; DNA; HUM; 3354 BP.
XX
AC HLA03698;
XX
SV HLA03698.2
XX
DT 31-MAR-2009 (Rel. 2.25.0, Created, Version 1)
DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 2)
XX
DE HLA-C*07:68, Human MHC Class I sequence
XX
KW Human MHC; HLA; Class I; HLA-C; Allele; HLA-C*07:68;
XX
OS Homo Sapiens (human)
OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates;
OC Catarrhini; Hominidae; Homo.
XX
CC --------------------------------------------------------------------------
CC IPD-IMGT/HLA Release Version 3.55.0
CC --------------------------------------------------------------------------
CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative
CC Commons Attribution-NoDerivs License, see;
CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details.
CC --------------------------------------------------------------------------
XX
RN [1]
RP 1-3354
RX PUBMED; 20860585.
RA Lazaro AM, Xiao Y, Masaberg C, Tu B, Ng J, Hurley CK, Posch PE;
RT "Seventy-eight novel HLA class I and II alleles identified during routine
RT registry typing in 2008 and 2009.";
RL Tissue Antigens 77:54-61(2011).
XX
RN [2]
RP 1-3354
RX PUBMED; 28547825.
RA Albrecht V, Zweiniger C, Surendranath V, Lang K, Schofl G, Dahl A, Winkler
RA S, Lange V, Bohme I, Schmidt AH;
RT "Dual redundant sequecing strategy: Full-length gene characterisation of
RT 1056 novel and confirmatory HLA alleles.";
RL HLA 90:79-87(2017).
XX
RN [3]
RP 1-3354
RX PUBMED; 31916686.
RA Hassall KB, Latham K, Robinson J, Gymer A, Goodall R, Merlo D, Marsh SGE,
RA Mayor NP;
RT "Extending the sequences of HLA class I alleles without full-length genomic
RT coverage using Single Molecule Real-Time (SMRT) DNA Sequencing.";
RL HLA 95:196-199(2020).
XX
CC --------------------------------------------------------------------------
CC The sequence below is the official allele sequence as approved by the
CC WHO Nomenclature Committee for Factors of the HLA System.
CC Any cross references may differ from the sequence shown below.
CC --------------------------------------------------------------------------
XX
DR EMBL; FJ792498; FJ792498.1.
DR EMBL; FJ797363; FJ797363.1.
DR EMBL; FJ858901; FJ858901.1.
DR EMBL; FJ858902; FJ858902.1.
DR EMBL; FJ976822; FJ976822.1.
DR EMBL; FJ998002; FJ998002.1.
DR EMBL; GQ149302; GQ149302.1.
DR EMBL; GQ180252; GQ180252.1.
DR EMBL; GQ240505; GQ240505.1.
DR EMBL; GQ240566; GQ240566.1.
DR EMBL; GQ345090; GQ345090.1.
DR EMBL; GQ345093; GQ345093.1.
DR EMBL; GQ994073; GQ994073.1.
DR EMBL; GQ994084; GQ994084.1.
DR EMBL; GU017950; GU017950.1.
DR EMBL; HM562339; HM562339.1.
DR EMBL; LT599307; LT599307.1.
DR EMBL; LT908513; LT908513.1.
XX
FH Key Location/Qualifiers
FH
FT source 1..3354
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT /ethnic="Native American, Undefined"
FT /cell_line="AN00945"
FT /cell_line="DKMS-LSL-C-1250"
FT /cell_line="HG00000655"
FT /cell_line="HG00000656"
FT /cell_line="HN-03908-0"
FT /cell_line="HN-08339-9"
FT /cell_line="HN-16429-0"
FT /cell_line="HN-28940-6"
FT /cell_line="HN-40383-4"
FT /cell_line="HN-53344-0"
FT /cell_line="HN-58361-9"
FT /cell_line="HN-58409-4"
FT /cell_line="HN-74665-8"
FT /cell_line="HN-76839-2"
FT /cell_line="HN-81747-5"
FT /cell_line="HN-91790-5"
FT /cell_line="NT01039"
FT CDS join(281..353,484..753,1004..1279,1867..2142,2267..2386,
FT 2827..2859,2967..3014,3179..3183)
FT /codon_start=1
FT /gene="HLA-C"
FT /allele="HLA-C*07:68"
FT /product="MHC Class I HLA-C*07:68 sequence"
FT /translation="MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPR
FT FISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRN
FT LRGYYNQSEDGSHTLQRMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA
FT AQITQRKLEAARAAEQDRAYLEGTCVEWLRRYLENGKKTLQRAEPPKTHVTHHPLSDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRY
FT TCHMQHEGLQEPLTLSWEPSSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGG
FT KGGSCSQAACSNSAQGSDESLITCKA"
FT UTR 1..280
FT exon 281..353
FT /number="1"
FT intron 354..483
FT /number="1"
FT exon 484..753
FT /number="2"
FT intron 754..1003
FT /number="2"
FT exon 1004..1279
FT /number="3"
FT intron 1280..1866
FT /number="3"
FT exon 1867..2142
FT /number="4"
FT intron 2143..2266
FT /number="4"
FT exon 2267..2386
FT /number="5"
FT intron 2387..2826
FT /number="5"
FT exon 2827..2859
FT /number="6"
FT intron 2860..2966
FT /number="6"
FT exon 2967..3014
FT /number="7"
FT intron 3015..3178
FT /number="7"
FT exon 3179..3183
FT /number="8"
FT UTR 3184..3354
SQ Sequence 3354 BP; 621 A; 995 C; 1042 G; 696 T; 0 other;
gatcaggacg aagtcccagg tcccgggcgg ggctctcagg gtctcaggct ccaagggccg 60
tgtctgcact ggggaggcgc cgcgttgagg attctccact cccctgagtt tcacttctcc 120
caacctgcgt cgggtccttc ttcctgaata ctcatgacgc gtccccaatt cccactccca 180
ttgggtgtcg ggttctagag aagccaatca gcgtctccgc agtcccggtt ctaaagtccc 240
cagtcaccca cccggactca cattctcccc agaggccgag atgcgggtca tggcgccccg 300
agccctcctc ctgctgctct cgggaggcct ggccctgacc gagacctggg cctgtgagtg 360
cggggttggg agggaagcgg cctctgcgga gaggagcgag gggccctccc ggcgagggcg 420
caggacccgg ggagccgcgc agggaggtgg gtcgggcggg tctcagcccc tcctcgcccc 480
caggctccca ctccatgagg tatttcgaca ccgccgtgtc ccggcccggc cgcggagagc 540
cccgcttcat ctcagtgggc tacgtggacg acacgcagtt cgtgcggttc gacagcgacg 600
ccgcgagtcc gagaggggag ccccgggcgc cgtgggtgga gcaggagggg ccggagtatt 660
gggaccggga gacacagaag tacaagcgcc aggcacaggc tgaccgagtg agcctgcgga 720
acctgcgcgg ctactacaac cagagcgagg acggtgagtg accccggccc ggggcgcagg 780
tcacgacccc tccccatccc ccacggacgg cccgggtcgc cccgagtctc cccgtctgag 840
atccacccca aggtggatct gcggaacccg cccagaccct cgaccggaga gagccccagt 900
cgcctttacc cggtttcatt ttcggtttag gccaaaatcc ccgcgggttg gtcggggcgg 960
ggcggggctc gggggacggg gctgaccgcg ggggcggggc cagggtctca caccctccag 1020
aggatgtctg gctgcgacct ggggcccgac gggcgcctcc tccgcgggta tgaccagtcc 1080
gcctacgacg gcaaggatta catcgccctg aacgaggacc tgcgctcctg gaccgccgcg 1140
gacaccgcgg ctcagatcac ccagcgcaag ttggaggcgg cccgtgcggc ggagcaggac 1200
agagcctacc tggagggcac gtgcgtggag tggctccgca gatacctgga gaacgggaag 1260
aagacgctgc agcgcgcggg taccaggggc agtggggagc cttccccatc tcctatagat 1320
ctcccgggat ggcctcccac gaggagggga ggaaaatggg atcagcactg gaatatcgcc 1380
ctcccttgaa tggagaatgg catgagtttt cctgagtttc ctctgagggc cccctctgct 1440
ctctaggaca attaagggat gaagtctctg aggaaatgga ggggaagaca gtccctggaa 1500
tactgatcag gggtctcctt tgaccacttt gaccactgca gcagctgtgg tcaggctgct 1560
gacctttctc tcaggccttg ttctctgcct cacactcaat gtgtctgaag gtttgattcc 1620
agcttttctg agtcctgcag cctccactca ggtcaggacc agaagtcgct gttcctccct 1680
cagagactag aactttccaa tgaataggag attatcccag gtgcctgtgt ccaggctggc 1740
gtctgggttc tgtgccgcct tccccacccc aggtgtcctg tccattctca ggatggtcac 1800
atgggcgctg ctggagtgtc ccaagagaga tgcaaagtgt ctgaattttc tgactcttcc 1860
cgtcagaacc cccaaagaca cacgtgaccc accaccccct ctctgaccat gaggccaccc 1920
tgaggtgctg ggccctgggc ttctaccctg cggagatcac actgacctgg cagcgggatg 1980
gggaggacca gacccaggac accgagcttg tggagaccag gccagcagga gatggaacct 2040
tccagaagtg ggcagctgtg gtggtgcctt ctggacaaga gcagagatac acgtgccata 2100
tgcagcacga ggggctgcaa gagcccctca ccctgagctg gggtaaggag gggaatgggg 2160
ggtcacatct cttatcagag aaagcagaag tccttctgga gcccttcagc cgggtcaggg 2220
ctgaggcttg ggggtcaggg cccctcacct tctcctcctt tcccagagcc atcttcccag 2280
cccaccatcc ccatcatggg catcgttgct ggcctggctg tcctggttgt cctagctgtc 2340
cttggagctg tggtcaccgc tatgatgtgt aggaggaaga gctcaggtag ggaaggggtg 2400
aagagcgggg tctgggtttt cttgtcccac tgggagtttc aagccccagg tagaagtgtg 2460
ccccgccttg ttactggaag caccatccac acatgggcca tcccagcctg ggaccctgtg 2520
tgccagcact tactcttttg tgaagcacat gtgacaatga aggacggatg tatcaccttg 2580
atgattatgg tgttggggtc ctgattccag cattcatgag tcaggggaag gtccctgcta 2640
aggacagacc ttaggagggc agttggtcca gaacccacag ctgctttccc catgtttcct 2700
gatcctgccc tgggtctgca gtcgtagttc tggaaacttc tcttgggtcc aagactagga 2760
ggttccccta agatcacatg gccctgcctc ctcccagtcc cctcataggg cattttcttc 2820
ccacaggtgg aaaaggaggg agctgctctc aggctgcgtg taagtgatgg cggcgggcgt 2880
gtggaggagc tcacctactc cataattcct cttgtcccac atctcctgcg ggctctgacc 2940
aggtcttttt ttttgttcta ccccaggcag caacagtgcc cagggctctg atgagtctct 3000
catcacttgt aaaggtgaga ttctggggag ctgaagtggt cgggggtggg gcagagggaa 3060
aaggcctggg taatggggat tctttgattg ggacgtttcg agtgtgtggt gggccgttca 3120
gagtgtcatc acttaccatg actgacctga atttgttcat gactattgtg ttctgtagcc 3180
tgagacagct gcctgtgtgg gactgagatg caggatttct tcacacctct cctttgtgac 3240
ttcaagagcc tctggcatct ctttctgcaa aggcatctga atgtgtctgc gttcctgtta 3300
gcataatgtg aggaggtgga gagacagccc acccccgtgt ccaccgtgac ccct 3354
//