Dbfetch
ID HLA03697; SV 2; standard; DNA; HUM; 3349 BP.
XX
AC HLA03697;
XX
SV HLA03697.2
XX
DT 31-MAR-2009 (Rel. 2.25.0, Created, Version 1)
DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 2)
XX
DE HLA-C*06:23, Human MHC Class I sequence
XX
KW Human MHC; HLA; Class I; HLA-C; Allele; HLA-C*06:23;
XX
OS Homo Sapiens (human)
OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates;
OC Catarrhini; Hominidae; Homo.
XX
CC --------------------------------------------------------------------------
CC IPD-IMGT/HLA Release Version 3.55.0
CC --------------------------------------------------------------------------
CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative
CC Commons Attribution-NoDerivs License, see;
CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details.
CC --------------------------------------------------------------------------
XX
RN [1]
RP 1-3349
RX PUBMED; 20860585.
RA Lazaro AM, Xiao Y, Masaberg C, Tu B, Ng J, Hurley CK, Posch PE;
RT "Seventy-eight novel HLA class I and II alleles identified during routine
RT registry typing in 2008 and 2009.";
RL Tissue Antigens 77:54-61(2011).
XX
RN [2]
RP 1-3349
RX PUBMED; 28547825.
RA Albrecht V, Zweiniger C, Surendranath V, Lang K, Schofl G, Dahl A, Winkler
RA S, Lange V, Bohme I, Schmidt AH;
RT "Dual redundant sequecing strategy: Full-length gene characterisation of
RT 1056 novel and confirmatory HLA alleles.";
RL HLA 90:79-87(2017).
XX
CC --------------------------------------------------------------------------
CC The sequence below is the official allele sequence as approved by the
CC WHO Nomenclature Committee for Factors of the HLA System.
CC Any cross references may differ from the sequence shown below.
CC --------------------------------------------------------------------------
XX
DR EMBL; FJ392208; FJ392208.1.
DR EMBL; FJ618918; FJ618918.1.
DR EMBL; FJ792508; FJ792508.1.
DR EMBL; FJ797369; FJ797369.1.
DR EMBL; FJ997942; FJ997942.1.
DR EMBL; GQ121343; GQ121343.1.
DR EMBL; GQ161071; GQ161071.1.
DR EMBL; GQ468255; GQ468255.1.
DR EMBL; GQ491101; GQ491101.1.
DR EMBL; GQ900574; GQ900574.1.
DR EMBL; GU128024; GU128024.1.
DR EMBL; JX174624; JX174624.1.
DR EMBL; LK021965; LK021965.1.
XX
FH Key Location/Qualifiers
FH
FT source 1..3349
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT /ethnic="Undefined"
FT /cell_line="DKMS-LSL-C-147"
FT /cell_line="HG00000701"
FT /cell_line="HG00000702"
FT /cell_line="HG00005688"
FT /cell_line="HN-10661-9"
FT /cell_line="HN-31137-6"
FT /cell_line="HN-35876-3"
FT /cell_line="HN-58547-6"
FT /cell_line="HN-65149-5"
FT /cell_line="HN-68335-1"
FT /cell_line="HN-91462-1"
FT /cell_line="NT01033"
FT CDS join(284..356,487..756,1003..1278,1866..2141,2263..2382,
FT 2822..2854,2962..3009,3174..3178)
FT /codon_start=1
FT /gene="HLA-C"
FT /allele="HLA-C*06:23"
FT /product="MHC Class I HLA-C*06:23 sequence"
FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFDTAVSRPGRGEPR
FT FISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVNLRK
FT LRGYYNQSEDGSHTLQWMCGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA
FT AQITQRKWEAAREAEQWRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVMCRRKSSGG
FT KGGSCSQAASSNSAQGSDESLIACKA"
FT UTR 1..283
FT exon 284..356
FT /number="1"
FT intron 357..486
FT /number="1"
FT exon 487..756
FT /number="2"
FT intron 757..1002
FT /number="2"
FT exon 1003..1278
FT /number="3"
FT intron 1279..1865
FT /number="3"
FT exon 1866..2141
FT /number="4"
FT intron 2142..2262
FT /number="4"
FT exon 2263..2382
FT /number="5"
FT intron 2383..2821
FT /number="5"
FT exon 2822..2854
FT /number="6"
FT intron 2855..2961
FT /number="6"
FT exon 2962..3009
FT /number="7"
FT intron 3010..3173
FT /number="7"
FT exon 3174..3178
FT /number="8"
FT UTR 3179..3349
SQ Sequence 3349 BP; 621 A; 984 C; 1045 G; 699 T; 0 other;
gatcaggacg aagtcccagg tcccgggcgg ggctctcagg gtctcaggct ccaagggccg 60
tgtctgcact ggggaggcgc cgcgttgagg attctccact cccctgagtt tcacttcttc 120
tcccaacctg cgtcgggtcc ttcttcctga atactcatga cgcgtcccca attcccactc 180
ccattgggtg tcgggttcta gagaagccaa tcagcgtctc cgcagtcccg gttctaaagt 240
ccccagtcac ccacccggac tcggattctc cccagacgcc gagatgcggg tcatggcgcc 300
ccgaaccctc atcctgctgc tctcgggagc cctggccctg accgagacct gggcctgtga 360
gtgcggggtt gggagggaaa cggcctctgc ggagaggagc gaggggcccg cccggcgagg 420
gcgcaggacc cggggagccg cgcagggagg tgggtcgggc gggtctcagc ccctcctcgc 480
ccccaggctc ccactccatg aggtatttcg acaccgccgt gtcccggccc ggccgcggag 540
agccccgctt catctcagtg ggctacgtgg acgacacgca gttcgtgcgg ttcgacagcg 600
acgccgcgag tccgagaggg gagccccggg cgccgtgggt ggagcaggag gggccggagt 660
attgggaccg ggagacacag aagtacaagc gccaggcaca ggctgaccga gtgaacctgc 720
ggaaactgcg cggctactac aaccagagcg aggacggtga gtgaccccgg cccggggcgc 780
aggtcacgac ccctccccat cccccacgga cggcccgggt cgccccgagt ctcccggtct 840
gagatccacc ccgaggctgc ggaacccgcc cagaccctcg accggagaga gccccagtca 900
cctttacccg gtttcatttt cagtttaggc caaaatcccc gcgggttggt cggggctggg 960
gcggggctcg ggggacgggg ctgaccacgg gggcggggcc agggtctcac accctccagt 1020
ggatgtgtgg ctgcgacctg gggcccgacg ggcgcctcct ccgcgggtat gaccagtccg 1080
cctacgacgg caaggattac atcgccctga acgaggacct gcgctcctgg accgccgcgg 1140
acacggcggc tcagatcacc cagcgcaagt gggaggcggc ccgtgaggcg gagcagtgga 1200
gagcctacct ggagggcacg tgcgtggagt ggctccgcag atacctggag aacgggaagg 1260
agacgctgca gcgcgcgggt accaggggca gtggggagcc ttccccatct cctgtagatc 1320
tcccgggatg gcctcccacg aggaggggag gaaaatggga tcagcgctag aatatcgccc 1380
tcccttgaat ggagaatggg atgagttttc ctgagtttcc tctgagggcc ccctctgctc 1440
tctaggacaa ttaagggatg aagtccttga ggaaatggag gggaagacag tccctggaat 1500
actgatcagg ggtccccttt gaccactttg accactgcag cagctgtggt caggctgctg 1560
acctttctct caggccttgt tctctgcctc acgctcaatg tgtttaaagg tttgattcca 1620
gcttttctga gtccttcggc ctccactcag gtcaggacca gaagtcgctg ttcctccctc 1680
agagactaga actttccaat gaataggaga ttatcccagg tgcctgtgtc caggctggcg 1740
tctgggttct gtgccccctt ccccacccca ggtgtcctgt ccattctcag gatggtcaca 1800
tgggcgctgt tggagtgtcg caagagagat acaaagtgtc tgaattttct gactcttccc 1860
gtcagaacac ccaaagacac acgtgaccca ccatcccgtc tctgaccatg aggccaccct 1920
gaggtgctgg gccctgggct tctaccctgc ggagatcaca ctgacctggc agcgggatgg 1980
cgaggaccaa actcaggaca ccgagcttgt ggagaccagg ccagcaggag atggaacctt 2040
ccagaagtgg gcagctgtgg tggtgccttc tggagaagag cagagataca cgtgccatgt 2100
gcagcacgag gggctgccag agcccctcac cctgagatgg ggtaaggagg gggatgaggg 2160
gtcatgtgtc ttctcaggga aagcagaagt cctggagccc ttcagccggg tcagggctga 2220
ggcttggggg tcagggcccc tcaccttccc ctcctttccc agagccatct tcccagccca 2280
ccatccccat cgtgggcatc gttgctggcc tggctgtcct ggctgtccta gctgtcctag 2340
gagctgtgat ggctgttgtg atgtgtagga ggaagagctc aggtagggaa ggggtgagga 2400
gtggggtctg ggttttcttg tcccactggg agtttcaagc cccaggtaga agtgtgcccc 2460
acctcgttac tggaagcacc atccacacat gggccatccc agcctgggac cctgtgtgct 2520
agcacttact ctgttgtgaa gcacatgaca atgaaggaca gatgtatcac cttgatgatt 2580
atggtgttgg ggtccttgat tccagcattc atgagtcagg ggaaggtccc tgctaaggac 2640
agaccttagg agggcagttg ctccagaacc cacagctgct ttccccgtgt ttcctgatcc 2700
tgccctgggt ctgcagtcat agttctggaa acttctcttg ggtccaagac taggaggttc 2760
ccctaagatc gcatggccct gcctcctccc tgtcccctca cagggcattt tcttcccaca 2820
ggtggaaaag gagggagctg ctctcaggct gcgtgtaagt gatggcggtg ggcgtgtgga 2880
ggagctcacc caccccataa ttcctcttgt cccacatctc ctgcgggctc tgaccaggtc 2940
tttttttttg ttctacccca gccagcaaca gtgcccaggg ctctgatgag tctctcatcg 3000
cttgtaaagg tgagattctg gggagctgaa gtggtctggg gtggggcaga gggaaaaggc 3060
ctaggtaatg gggatccttt gattgggacg tttcgaatgt gtggtgagct gttcagagtg 3120
tcatcactta ccatgactga cctgaatttg ttcatgacta ttgtgttctg tagcctgaga 3180
cagctgcctg tgtgggactg agatgcagga tttcttcaca cctctccttt gtgacttcaa 3240
gagcctctgg catctctttc tgcaaaggca tctgaatgtg tctgcgttcc tgttagcata 3300
atgtgaggag gtggagagac agcccacccc cgtgtccacc gtgacccct 3349
//