Dbfetch
ID HLA02670; SV 3; standard; DNA; HUM; 3359 BP. XX AC HLA02670; XX SV HLA02670.3 XX DT 27-SEP-2006 (Rel. 2.15.0, Created, Version 1) DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 3) XX DE HLA-C*01:02:04, Human MHC Class I sequence XX KW Human MHC; HLA; Class I; HLA-C; Allele; HLA-C*01:02:04; XX OS Homo Sapiens (human) OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates; OC Catarrhini; Hominidae; Homo. XX CC -------------------------------------------------------------------------- CC IPD-IMGT/HLA Release Version 3.55.0 CC -------------------------------------------------------------------------- CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative CC Commons Attribution-NoDerivs License, see; CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details. CC -------------------------------------------------------------------------- XX RN [1] RP 1-3359 RX PUBMED; 30117314. RA Lazaro A, Hou L, Tu B, Masaberg C, Enriquez E, Gerfen J, Kariyawasam K, RA Persaud M, Qin X, Simbulan D, Xiao Y, Xun L, Yang R, Ng J, Hurley CK; RT "Full gene HLA class I sequences of 79 novel and 519 mostly uncommon RT alleles from a large United States registry population."; RL HLA 92:304-309(2018). XX CC -------------------------------------------------------------------------- CC The sequence below is the official allele sequence as approved by the CC WHO Nomenclature Committee for Factors of the HLA System. CC Any cross references may differ from the sequence shown below. CC -------------------------------------------------------------------------- XX DR EMBL; AM397243; AM397243.1. DR EMBL; FR872747; FR872747.1. DR EMBL; MG787281; MG787281.1. DR EMBL; MG944943; MG944943.1. XX FH Key Location/Qualifiers FH FT source 1..3359 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT /ethnic="Undefined" FT /cell_line="37109" FT /cell_line="Me-037" FT /cell_line="NT01989" FT /cell_line="NT02058" FT CDS join(295..367,498..767,1014..1289,1877..2152,2274..2393, FT 2833..2865,2973..3020,3185..3189) FT /codon_start=1 FT /gene="HLA-C" FT /allele="HLA-C*01:02:04" FT /product="MHC Class I HLA-C*01:02:04 sequence" FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMKYFFTSVSRPGRGEPR FT FISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRN FT LRGYYNQSEAGSHTLQWMCGCDLGPDGRLLRGYDQYAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVMVPSGEEQRY FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIACKA" FT UTR 1..294 FT exon 295..367 FT /number="1" FT intron 368..497 FT /number="1" FT exon 498..767 FT /number="2" FT intron 768..1013 FT /number="2" FT exon 1014..1289 FT /number="3" FT intron 1290..1876 FT /number="3" FT exon 1877..2152 FT /number="4" FT intron 2153..2273 FT /number="4" FT exon 2274..2393 FT /number="5" FT intron 2394..2832 FT /number="5" FT exon 2833..2865 FT /number="6" FT intron 2866..2972 FT /number="6" FT exon 2973..3020 FT /number="7" FT intron 3021..3184 FT /number="7" FT exon 3185..3189 FT /number="8" FT UTR 3190..3359 SQ Sequence 3359 BP; 629 A; 981 C; 1047 G; 702 T; 0 other; aggagaagag ggatcaggac gaagtcccag gtcccgggcg gggttctcag ggtctcaggc 60 tccaagggcc gtgtctgcac tggggaggcg ccgcgttgag gattctccac tcccctgagt 120 ttcacttctt ctcccaacct gcgtcgggtc cttcttcctg aatactcatg acgcgtcccc 180 aattcccact cccattgggt gtcgggttct agagaagcca atcagcgtct ccgcagtccc 240 ggttctaaag tccccagtca cccacccgga ctcagattct ccccagacgc cgagatgcgg 300 gtcatggcgc cccgaaccct catcctgctg ctctcgggag ccctggccct gaccgagacc 360 tgggcctgtg agtgcggggt tgggagggaa acggcctctg cggagaggaa cgaggtgccc 420 gcccggcgag ggcgcaggac ccggggagcc gcgcagggag gagggtcggg cgggtctcag 480 cccctcctcg cccccaggct cccactccat gaagtatttc ttcacatccg tgtcccggcc 540 cggccgcgga gagccccgct tcatctcagt gggctacgtg gacgacacgc agttcgtgcg 600 gttcgacagc gacgccgcga gtccgagagg ggagccgcgg gcgccgtggg tggagcagga 660 ggggccggag tattgggacc gggagacaca gaagtacaag cgccaggcac agactgaccg 720 agtgagcctg cggaacctgc gcggctacta caaccagagc gaggccggtg agtgaccccg 780 gcccggggcg caggtcacga cccctcctca tcccccacgg acggcccggg tcgccccaag 840 tctcccggtc tgagatccac cccgaggctg cggaacccgc ccagaccctc gaccggagag 900 agccccagtc acctttaccc ggtttcattt tcagtttagg ccaaaatccc cgcgggttgg 960 tcgggactgg ggcggggctc gggggacggg gctgaccacg ggggcggggc cagggtctca 1020 caccctccag tggatgtgtg gctgcgacct ggggcccgac gggcgcctcc tccgcgggta 1080 tgaccagtac gcctacgacg gcaaggatta catcgccctg aacgaggacc tgcgctcctg 1140 gaccgccgcg gacaccgcgg ctcagatcac ccagcgcaag tgggaggcgg cccgtgaggc 1200 ggagcagcgg agagcctacc tggagggcac gtgcgtggag tggctccgca gatacctgga 1260 gaacgggaag gagacgctgc agcgcgcggg taccaggggc agtggggagc cttccccatc 1320 tcccgtagat ctcccggcat ggcctcccac gaggagggga ggaaaatggg atcagcgcta 1380 gaatatcgcc ctcccttgaa tggagaatgg gatgagtttt cctgagtttc ctctgagggc 1440 cccctctgct ctctaggaca attaagggat gaagtccttg aggaaatgga ggggaagaca 1500 gtccctggaa tactgatcag gggtcccctt tgaccacttt gaccactgca gcagctgtgg 1560 tcaggctgct gacctttctc tcaggccttg ttctctgcct cacgctcaat gtgtttgaag 1620 gtttgattcc agcttttctg agtccttcgg cctccactca ggtcaggacc agaagtcgct 1680 gttcctccct cagagactag aactttccaa tgaataggag attatcccag gtgcctgtgt 1740 ccaggctggc gtctgggttc tgtgccccct tccccacccc aggtgtcctg tccattctca 1800 ggatggtcac atgggcgctg ttggagtgtc gcaagagaga tacaaagtgt ctgaattttc 1860 tgactcttcc cgtcagaaca cccaaagaca cacgtgaccc accatcccgt ctctgaccat 1920 gaggccaccc tgaggtgctg ggccctgggc ttctaccctg cggagatcac actgacctgg 1980 cagtgggatg gggaggacca aactcaggac accgagcttg tggagaccag gccagcagga 2040 gatggaacct tccagaagtg ggcagctgtg atggtgcctt ctggagaaga gcagagatac 2100 acgtgccatg tgcagcacga ggggctgccg gagcccctca ccctgagatg gggtaaggag 2160 ggggatgagg ggtgatgtgt cttctcaggg aaagcagaag tcctggagcc cttcagccgg 2220 gtcagggctg aggcttggag gtcagggccc ctcaccttcc cctcctttcc cagagccgtc 2280 ttcccagccc accatcccca tcgtgggcat cgttgctggc ctggctgtcc tggctgtcct 2340 agctgtccta ggagctgtgg tggctgttgt gatgtgtagg aggaagagct caggtaggga 2400 aggggtgagg agtggggtct gggttttctt gttccactgg gagtttcaag ccccaggtag 2460 aagtgtgccc cacctcgtta ctggaagcac catccacaca tgggccatcc cagcctggga 2520 ccctgtgtgc cagcacttac tctgttgtga agcacatgac aatgaaggac agatgtatca 2580 ccttgatgat tatggtgttg gggtccttga ttccagcatt catgagtcag gggaaggtcc 2640 ctgctaagga cagaccttag gagggcagtt gcttcagaac ccacagctgc tttccccgtg 2700 tttcctgatc ctgccctggg tctgcagtca tagttctgga aacttctctt gggtccaaga 2760 ctaggaggtt cccctaagat cgcatggccc tgcctcctcc ctgtcccctc acagggcatt 2820 ttcttcccac aggtggaaaa ggagggagct gctctcaggc tgcgtgtaag tgatggcggt 2880 gggcgtgtgg aggagctcac ccaccccata attcctcttg tcccacatct cctgcgggct 2940 ctgaccaggt cttttttttt gttctacccc agccagcaac agtgcccagg gctctgatga 3000 gtctctcatc gcttgtaaag gtgagattct ggggagctga agtggtcggg ggtggggcag 3060 agggaaaagg cctaggtaat ggggatcctt tgattgggac gtttcgaatg tgtggtgagc 3120 tgttcagagt gtcatcactt accatgactg acctgaattt gttcatgact attgtgttct 3180 gtagcctgag acagctgcct gtgtgggact gagatgcagg atttcttcac acctctcctt 3240 tgtgacttca agagcctctg gcatctcttt ctgcaaaggc atctgaatgt gtctgcgttc 3300 ctgttagcat aatgtgagga ggtggagaga cagcccaccc ccgtgtccac cgtgacccc 3359 //