Dbfetch
ID HLA02341; SV 1; standard; DNA; HUM; 5426 BP. XX AC HLA02341; XX SV HLA02341.1 XX DT 23-SEP-2005 (Rel. 2.12.0, Created, Version 1) DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 1) XX DE HLA-DQA1*05:08:01, Human MHC Class II sequence XX KW Human MHC; HLA; Class II; HLA-DQA1; Allele; HLA-DQA1*05:08:01; XX OS Homo Sapiens (human) OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates; OC Catarrhini; Hominidae; Homo. XX CC -------------------------------------------------------------------------- CC IPD-IMGT/HLA Release Version 3.55.0 CC -------------------------------------------------------------------------- CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative CC Commons Attribution-NoDerivs License, see; CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details. CC -------------------------------------------------------------------------- XX RN [1] RP 1-5426 RX PUBMED; 16866887. RA Lee KW, Jung YA, Oh DH; RT "Four novel human leukocyte antigen-DQA1 alleles identified in the Korean RT population."; RL Tissue Antigens 68:167-172(2006). XX CC -------------------------------------------------------------------------- CC The sequence below is the official allele sequence as approved by the CC WHO Nomenclature Committee for Factors of the HLA System. CC Any cross references may differ from the sequence shown below. CC -------------------------------------------------------------------------- XX DR EMBL; DQ178412; DQ178412.1. DR EMBL; DQ178413; DQ178413.1. DR EMBL; DQ178414; DQ178414.1. DR EMBL; DQ178415; DQ178415.1. DR EMBL; OP036677; OP036677.1. DR EMBL; OR557195; OR557195.1. XX FH Key Location/Qualifiers FH FT source 1..5426 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT /ethnic="Asian, Undefined" FT /cell_line="018181562" FT /cell_line="BM3146" FT /cell_line="PSCDA0542" FT CDS join(1..82,3903..4148,4561..4842,5272..5426) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*05:08:01" FT /product="MHC Class II HLA-DQA1*05:08:01 sequence" FT /translation="MILNKALMLGTLALTTVMSPCGGEDIVADHVASYGVNLYQSYGPS FT GQYTHEFDGDEQFYVDLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNS FT TAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETIFL FT SKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCAL FT GLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL" FT exon 1..82 FT /number="1" FT intron 83..3902 FT /number="1" FT exon 3903..4148 FT /number="2" FT intron 4149..4560 FT /number="2" FT exon 4561..4842 FT /number="3" FT intron 4843..5271 FT /number="3" FT exon 5272..5426 FT /number="4" SQ Sequence 5426 BP; 1588 A; 1145 C; 1161 G; 1532 T; 0 other; atgatcctaa acaaagctct gatgctgggg acccttgccc tgaccaccgt gatgagcccc 60 tgtggaggtg aagacattgt gggtgagtgt atgagtgagg gatgttctct ggagctggaa 120 gagaggaaat tgaagcaaaa gagagaaagc gatttgcaga gaaattgtag agatttccta 180 agggtccctt cagtattaag agatttaaaa attatggctg ttcctccttc aggaaaccag 240 agtcccaacc tactcttttt gttatctatg ctgttggcgt tcactaagga tgctattctg 300 tttatattgt attcagtgac tatagcctgg aggtctctat gtcattccat catgattgcc 360 tcaaaaatta gtgaggtttc catcaatgga taatttttta ttattaaaaa tttgtgaagt 420 atcattctca aatttccctg aacaactttt gaagcttttc ggatgtctcc tgtagtagcg 480 cttggggtaa atgattccat caattatata ctctatagat attaagaaag atgccctttt 540 ctttctctca gacttactaa catttccacg tgggaactgg cacaggtggg gagtgggtaa 600 aggagtccag caggctgaat gccttcaaca atcattttac cacatggtcc tcacttactc 660 tcagctgcct catatgtgtc acctcacaaa taatcaaata aaatgggcat gtagctaagc 720 tttgtaaata gtgaaaacat gaatgtcaat tttattttta catatttcta ttataggtat 780 agcttcacat ttcttttctt ttgcaaaata aggaatcctt ttattttaaa attgagaatt 840 tatagtagaa aaacttggta aattaaatca ttttattctc aaattatcaa cccaaattac 900 ctgttcttca actcatctaa tgaagtccta taaaaagaaa agtgggccag acatggtggc 960 tcatgcctgt aatcccagca ctttgggagg ccgaggcagg aggatccttt gagcccagga 1020 gttgagacca gcctgggcaa catagcaaga cctcatctct acaaaaaata aaaattagcc 1080 aggtgtggtg gtgcatgcct gtggtgccag ctactcagaa ggctgcagtg ggaggactgc 1140 ttgagtccag gaggcggaag ctgcagtgag ccatgatggc accactacac tccagccagg 1200 gcaacagaga gaaactctgt ctcagaaaga aaaaggaaag aaagagagaa aggaaggaaa 1260 gaaagaaaga aggaaggaag gaaggaagaa ggggaaggga agggaaggaa gggaaggaaa 1320 gggaagggag gaaagaagga aggaaaaaag aaaaagaaag aaaaaagaaa gaaaaagaaa 1380 gaaagaaaga aaagagggaa ggaaagaaag aaaaaggaag gaaggaagca cagattaatt 1440 attaatcatt tggtctctct tagtcttctc tgtctttgtc atccatctat ttccacctct 1500 cttcatgcat tcctttctcc ctcttccctt tcaggatcca tctctgactc cctgcttctt 1560 tatatggaca gtggggtttg taaaacaaaa gttgaaaaat cagatagtta aaaggtgaag 1620 tgaactggaa ggtctaaact tccacaacct tattaaccat ggctgctccc attctgattt 1680 tgttcgacgg tggaagtttc acctccttct ccagagcact tggcttcttt gttccaaatt 1740 tcctttcttc aacctcacac cagagtgccc tggtcaggct cggctcatcc attaggcaca 1800 acatgggcaa tgcagagaac cctccatact gtaaagccac atgagaatgt tttaactcct 1860 tttaagatta gaaaaaaatg aaatttcaga gcctaagaaa atgttttaat tcagcctaga 1920 ttgtattgtc tttataccaa ttcagtcata aaatacaatt ttccatattt tcatggagga 1980 aggggcccac aaaagcaaga gtgctcaggg ctcacatgtc agaatgcagc cctggtcatg 2040 gctgatcctg gccttcttat gattctgcta gtgtgcctgt ccgtcttccc caaaatctat 2100 gtcgtcctca aatatagcaa ctgtaattca aaacacgttt gagcacacag taagctaagt 2160 tttaaggatt caaagatgaa aagtcatgct gtcttccctg cagagggtgc tcagactagt 2220 gatggaaacg gtatgggatg caggaaagca gaaggccatt gctgaccagg gcagtggact 2280 cagcagaggc tgaaactata caaatgactt ggttccagct gggccagcag ggtgacatcc 2340 tccagcaaaa ctcggcaccc aagacaagtc ccagatgaaa agaaggattg ctttgtgttt 2400 gataaggagt caaggtttat tgcaaggata aggctttgtt ggtggcctgt taagacaatc 2460 cagggcagtc atactggata aggaagaagg tgagctggaa gaggaacaga caaacagcca 2520 gatattgagg tggaggagct ggaggtcata acgtggtcaa aaacatgtcg atgagaggac 2580 ttagctacaa agttgttaac ttaagcagaa acctcaagga tgaattttag gatttctcca 2640 ggaagtccta aaagataatt tcatttcagg gagaaaaaca acaaaccact ggaaagacca 2700 gggaacatga aaggataatg tagtttggtt tgcttggcag atacttatga aggatgttgg 2760 actgtaaggc tgttgatagc ctcctcacag aacatgctac agtacattgt atctgctccc 2820 ttacctacct gactcttcca ctcttcagtt tgttccttaa tggtagacca tgcctgattg 2880 gtgttttaca catcccctgc tatgtctgac acttgtggat gctcagaaag tggggaagga 2940 aggaaagata caacggtaaa aggcttacac gtcttgacag gaatgtccag ttcggctcat 3000 ttggctggag ccacattgca cggctgccat tctgctctgg catcctcaga caagcacact 3060 gcccattaga ggaaaaaggg tttaatttac ctgagtcctc aagtgaatat aagtgttaag 3120 tcagaacact gtagacattt agtaacctcc ttcagaggaa aaaaaaaggt ggggggaaat 3180 gacagaaatc caaaaactag tagagcttcc actcttcatt tcagaagaaa tcagttgctc 3240 tcctctaagg accattacta ttaacaaaac agagaccttg aaggaggcat tgtttattta 3300 ttatatattt tgtaatgtta ttaccattct tgttatacta ttccttatac cctacaattg 3360 ttagcagaca ttattttaaa ttaataagat cctgcatgct tttctttttt taaaaaaaag 3420 aaagaccttc tgtgtagagt gtcctgttct gagccagtcc tgagaggaaa gaaaatacaa 3480 tcagtttgtt attaactgag gaaagaatta agtgaaagat gaatcttagg aagcagaagg 3540 aagtaaacct aatctctgac taagaaagct aaataccata ataactcatt cattccttct 3600 tttgttcaat tacattattt aatcataagt ccgtgatgtg ccaggcactc aggaaatagt 3660 aaaaactgga catgtgatat tctgcccttg tgtagcgcac attatagtgg gaaagaaagc 3720 gcaattttaa ccggacaact accaacaata agagcggagg aagcaggggt tggaaatgtc 3780 cacaggctgt gccaaagatg aagcccgtaa tatttgaaag tcagtttctt tcatcatttt 3840 gtgtattaag gttctttctt cccctgttct ccaccttcct gcttgtcatc ttcactcatc 3900 agctgaccac gtcgcctctt atggtgtaaa cttgtaccag tcttacggtc cctctggcca 3960 gtacacccat gaatttgatg gagatgagca gttctacgtg gacctgggga ggaaggagac 4020 tgtctggtgt ttgcctgttc tcagacaatt tagatttgac ccgcaatttg cactgacaaa 4080 catcgctgtc ctaaaacata acttgaacag tctgattaaa cgctccaact ctaccgctgc 4140 taccaatggt atgtgtcaac aattctgccc ctctttactg atttatccct tcataccaag 4200 tttcattatt ttatttccaa gaggtcccca gatcttctca tggcaattgc tgaaatttta 4260 tcatctccca tctctaaaat cacatattcc catgtaatac aagggtcttt ccattatcca 4320 ttcattaaat ccttctcgga gaggtctcat caacctccta ctttattaaa catgcccaca 4380 gagagaaggg cacaggaata aagcggaggc aatgtgtcgt tgctcccaag cagaaggtaa 4440 ataagacctc tttgactatc aggtggtgaa atgctggtag gagggctctt ccaggatgta 4500 atgcagaagc tcatggcaga gctattcaca cttcacatca gtgctgtttc ctcaccacag 4560 aggttcctga ggtcacagtg ttttccaagt ctcccgtgac actgggtcag cccaacatcc 4620 tcatctgtct tgtggacaac atctttcctc ctgtggtcaa catcacatgg ctgagcaatg 4680 ggcactcagt cacagaaggt gtttctgaga ccatcttcct ctccaagagt gatcattcct 4740 tcttcaagat cagttacctc accctcctcc cttctgctga ggagagttat gactgcaagg 4800 tggagcactg gggactggac aagcctcttc tgaaacactg gggtaaggat gagttccacc 4860 actttttgat gctttcttgt ctgtcaagtt cagaacttcc tgccttttac tcctatatcc 4920 caaaacttgt tttccacact tcatgggttt ctttctttct ttctttcttt ctttctttct 4980 ttctttcttt ctttctttct ttctttcttt ctttctttct ttcttttttg aaagaataaa 5040 gcaacaaaag caaagattta ttgaaaatga aagtacactt cacatggtgg gagcgggcct 5100 gagcataggg gctcaagagc cacttcatgg gtttctaatg atagacttca ctctcctccc 5160 taagctgggg accttgagtc tttgcagagc caaccctcca ccccatccca tcccacacac 5220 atgcacatga gcacactctg ctttctgacc tcaacgactt catatccaca gagcctgaga 5280 ttccagcccc tatgtcagag ctcacagaga ctgtggtctg cgccctgggg ttgtctgtgg 5340 gcctcgtggg cattgtggtg ggcactgtct tcatcatccg aggcctgcgt tcagttggtg 5400 cttccagaca ccaagggccc ttgtga 5426 //