Dbfetch
ID HLA02340; SV 1; standard; DNA; HUM; 6529 BP. XX AC HLA02340; XX SV HLA02340.1 XX DT 23-SEP-2005 (Rel. 2.12.0, Created, Version 1) DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 1) XX DE HLA-DQA1*05:07, Human MHC Class II sequence XX KW Human MHC; HLA; Class II; HLA-DQA1; Allele; HLA-DQA1*05:07; XX OS Homo Sapiens (human) OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates; OC Catarrhini; Hominidae; Homo. XX CC -------------------------------------------------------------------------- CC IPD-IMGT/HLA Release Version 3.55.0 CC -------------------------------------------------------------------------- CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative CC Commons Attribution-NoDerivs License, see; CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details. CC -------------------------------------------------------------------------- XX RN [1] RP 1-6529 RX PUBMED; 16866887. RA Lee KW, Jung YA, Oh DH; RT "Four novel human leukocyte antigen-DQA1 alleles identified in the Korean RT population."; RL Tissue Antigens 68:167-172(2006). XX RN [2] RP 1-6529 RX PUBMED; 30337930. RA Suzuki S, Ranade S, Osaki K, Iyo S, Shigenari A, Ohnuki Y, Oka A, Masuya A, RA Harting J, Baybayan P, Kitazume M, Sunaga J, Morishima S, Morishima Y, RA Inoko H, Kulski JK, Shiina T; RT "Reference grade characterization of polymorphisms in full-length HLA class RT I and II genes with short-read sequencing on the ION PGM system and RT long-reads generated by single molecule, real-time sequencing on the PacBio RT platform."; RL Frontiers in Immunology 9:2294(2018). XX CC -------------------------------------------------------------------------- CC The sequence below is the official allele sequence as approved by the CC WHO Nomenclature Committee for Factors of the HLA System. CC Any cross references may differ from the sequence shown below. CC -------------------------------------------------------------------------- XX DR EMBL; DQ178408; DQ178408.1. DR EMBL; DQ178409; DQ178409.1. DR EMBL; DQ178410; DQ178410.1. DR EMBL; DQ178411; DQ178411.1. DR EMBL; LC257847; LC257847.1. XX FH Key Location/Qualifiers FH FT source 1..6529 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT /ethnic="Asian" FT /cell_line="BM3189" FT /cell_line="JM36" FT CDS join(743..824,4644..4889,5302..5583,5947..6101) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*05:07" FT /product="MHC Class II HLA-DQA1*05:07 sequence" FT /translation="MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPS FT GQYTHEFDGDEQFYVDLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNS FT TAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFL FT SKSDHSFFKISYLTLLPSSEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCAL FT GLSVGLVCIVVGTVFIIRGLRSVGASRHQGPL" FT UTR 1..742 FT exon 743..824 FT /number="1" FT intron 825..4643 FT /number="1" FT exon 4644..4889 FT /number="2" FT intron 4890..5301 FT /number="2" FT exon 5302..5583 FT /number="3" FT intron 5584..5946 FT /number="3" FT exon 5947..6101 FT /number="4" FT UTR 6102..6529 SQ Sequence 6529 BP; 1909 A; 1400 C; 1435 G; 1785 T; 0 other; aaaaattcct ggaggttgta actcagaaaa tcctgaagga tgccgtataa ttgatgatgt 60 catctatcca cgaggctgct cagaaatgcc cacccctggc cagggcggtg gctcatgcct 120 gtaatctgag cactttggga ggctgagatg ggcagatcac gaattcagga gttcgagacc 180 agcctggcca acatagtgaa actctgtctc tactaaaaat acaaaaatta gccgggcgtg 240 gtggcaggtg cctgtaatcc cagctacttg ggagggtgag acaggagaat cacttgaacc 300 cgggagtcaa agtttgcagt gagccgagac catgccattg cacctcagcc tgggtgacag 360 agtgagacta catctcaaaa aaaaaaaaaa agaaagaaag aaaaaaagaa aagaaatgcc 420 cacccctctt gccactggca gacatgcaca caccagagaa gattccgatt tcgtgtcctc 480 cctctattca cagaacattt cctcaagtcc actctgagtg gaggctgcat cacaacaagg 540 ggattgccct gtctccttcc agggctctta atacaaactc ttcaactagt aactgaggtg 600 tcatcatagg ggatttttct aattagccaa aacctgactt ggcagggttt ggtttgggtg 660 tcttcagatt gccttgtctc gaggtcctca caattgctct acaactcaga acagcaactg 720 ctaaggctgc cttgggaaga ggatgatcct aaacaaagct ctgatgctgg gggcccttgc 780 cctgaccacc gtgatgagcc cctgtggagg tgaagacatt gtgggtgagt gtatgagtga 840 gggatgttct ctggagctgg aagagaggaa attgaagcaa aagagagaaa gcgatttgca 900 gagaaattgt agagatttcc taagggtccc ttcagtatta agagatttaa aaattatggc 960 tgttcctcct tcaggaaacc agagtcccaa cctactcttt ttgttatcta tgctgttggc 1020 gttcactaag gatgctattc tgtttatatt gtattcagtg actatagcct ggaggtctct 1080 atgtcattcc atcatgattg cctcaaaaat tagtgaggtt tccatcaatg gataattttt 1140 tattattaaa aatttgtgaa gtatcattct caaatttccc tgaacaactt ttgaagcttt 1200 tcggatgtct cctgtagtag cgcttggggt aaatgattcc atcaattata tactctatag 1260 atattaagaa agatgccctt ttctttctct cagacttact aacatttcca cgtgggaact 1320 ggcacaggtg gggagtgggt aaaggagtcc agcaggctga atgccttcaa caatcatttt 1380 accacatggt cctcatttac tctcagctgc ctcatatgtg tcacctcaca aataatcaaa 1440 taaaattggc atgtagctaa gctttgtaaa tagtgaaaac atgaatgtca attttatttt 1500 tacatatttc tattataggt atagcttcac atttcttttc ttttgcaaaa taaggtatcc 1560 ttttatttta aaattgagaa tttatagtag aaaaacttgg taaattaaat cattttattc 1620 tcaaattatc aacccaaatt acctgttctt caactcatct aatgaagtcc tataaaaaga 1680 aaagtgggcc agacatggtg gctcatgcct gtaatcccag cactttggga ggccgaggca 1740 ggaggatcct ttgagcccag gagttgagac cagcctgggc aacatagcaa gacctcatct 1800 ctacaaaaaa taaaaattag ccaggtgtgg tggtgcatgc ctgtggtgcc agctactcag 1860 aaggctgcag tgggaggact gcttgagtcc aggaggcgga agctgcagtg agccatgatg 1920 gcaccactac actccagcca gggcaacaga gagaaactct gtctcaaaaa gaaaaaggaa 1980 agaaagagag aaaggaagga aagaaagaaa gaaggaagga aggaaggaag gaagaagggg 2040 aagggaaggg aaggaaggga aggaaagggg aggaaagaag gaaggaaaaa agaaaaagaa 2100 agaaaaaaga aagaaaaaga aagaaagaaa gaaaagaggg aaggaaagaa agaaaaagga 2160 aggaaggaag cacagattaa ttattaatca tttggtctct cttagtcttc tctgtctttg 2220 tcatccatct atttccacct ctcttcatgc attcctttct ccctcttccc tttcaggatc 2280 catctctgac tccctgcttc tttatatgga cagtggggtt tgtaaaacaa aagttgaaaa 2340 atcagatagt taaaaggtga agtgaactgg aaggtctaaa cttccacaac cttattaacc 2400 atggctgctc ccattctgat tttgttcgac ggtggaagtt tcacctcctt ctccagagca 2460 cttggcttct ttgttccaaa tttcctttct tcaacctcac accagagtgc cctggtcagg 2520 ctcggctcat ccattaggca caacatgggc aatgcagaga accctccata ctgtaaagcc 2580 acatgagaat gttttaactc cttttaagat tagaaaaaaa tgaaatttca gagcctaaga 2640 aaatgtttta attcagccta gattgtattg tctttatacc aattcagtca taaaatacaa 2700 ttttccatat tttcatggag gaaggggccc acaaaagcaa gagtgctcag ggctcacatg 2760 tcagaatgca gccctggtca tggctgatcc tggccttctt atgattctgc tagtgtgcct 2820 gtccatcttc cccaaaatct atgtcgtcct caaatatagc aactgtaatt caaaacacgt 2880 ttgagcacac agtaagctaa gttttaagga ttcaaagatg aaaagtcatg ctgtcttccc 2940 tgcagagggt gctcagacta gtgacggaaa cggtatggga tgcaggaaag cagaaggcca 3000 ttgctgacca gggcagtgga ctcagcagag gctgaaacta tacaaatgac ttggttccag 3060 ctgggccagc agggtgacat cctccagcaa aactcggcac ccaagacaag tcccagatga 3120 aaagaaggat tgctttgtgt ttgataagga gtcaaggttt attgcaagga taaggctttg 3180 ttggtggcct gttaagacaa tccagggcag tcatactgga taaggaagaa ggtgagctgg 3240 aagaggaaca gacaaacagc cagatattga ggtggaggag ctggaggtca taacgtggtc 3300 aaaaacatgt cgatgagagg acttagctac aaagttgtta acttaagcag aaacctcaag 3360 gatgaatttt aggatttctc caggaagtcc taaaagataa tttcatttca gggagaaaaa 3420 caacaaacca ctggaaagac cagggaacat gaaaggataa tgtagtttgg tttgcttggc 3480 agatacttat gaaggatgtt ggactgtaag gctgttgata gcctcctcac agaacatgct 3540 acagtacatt gtatctgctc ccttacctac ctgactcttc cactcttcag tttgttcctt 3600 aatggtagac catgcctgat tggtgtttta cacatcccct gctatgtctg acacttgtgg 3660 atgctcagaa agtggggaag gaaggaaaga tacaacggta aaaggcttac acgtcttgac 3720 aggaatgtcc agttcggctc atttggctgg agccacattg cacggctgcc attctgctct 3780 ggcatcctca gacaagcaca ctgcccatta gaggaaaaag ggtttaattt acctgagtcc 3840 tcaagtgaat ataagtgtta agtcagaaca ctgtagacat ttagtaacct ccttcagagg 3900 aaaaaaaaag gtggggggaa atgacagaaa tccaaaaact agtagagctt ccactcttca 3960 tttcagaaga aatcagttgc tctcctctaa ggaccattac tattaacaaa acagagacct 4020 tgaaggaggc attgtttatt tattatatat tttgtaatgt tattaccatt cttgttatac 4080 tcttccttat accctacaat tgttagcaga cattatttta aattaataag atcctgcatg 4140 cttttctttt ttttaaaaaa agaaagacct ctgtgtagag tgtcctgttc tgagccagtc 4200 ctgagaggaa agaaaataca atcagtttgt tattaactga tgaaagaatt aagtgaaaga 4260 tgaatcttag gaagcagaag gaagtaaacc taatctctga ctaagaaagc taaataccat 4320 aataactcat tcattccttc ttttgttcaa ttacattatt taatcataag tccgtgatgt 4380 gccaggcact caggaaatag taaaaactgg acatgtgata ttctgccctt gtgtagcgca 4440 cattatagtg ggaaagaaag cgcaatttta accggacaac taccaacaat aagagtggag 4500 gaagcagggg ttggaaatgt ccacaggctg tgccaaagat gaagcccgta atatttgaaa 4560 gtcagtttct ttcatcattt tgtgtattaa ggttctttct tcccctgttc tccaccttcc 4620 tgcttgtcat cttcactcat cagctgacca cgtcgcctct tatggtgtaa acttgtacca 4680 gtcttacggt ccctctggcc agtacaccca tgaatttgat ggagatgagc agttctacgt 4740 ggacctgggg aggaaggaga ctgtctggtg tttgcctgtt ctcagacaat ttagatttga 4800 cccgcaattt gcactgacaa acatcgctgt cctaaaacat aacttgaaca gtctgattaa 4860 acgctccaac tctaccgctg ctaccaatgg tatgtgtcaa caattctgcc cctctttact 4920 gatttatccc ttcataccaa gtttcattat tttatttcca agaggtcccc agatcttctc 4980 atggcaattg ctgaaatttt atcatctccc atctctaaaa tcacatattc ccatgtaata 5040 caagggtctt tccattatcc attcattaaa tccttctcgg agaggtctca tcaacctcct 5100 actttattaa acatgcccac agagagaagg gcacaggaat aaagcgaagg caatgtgtcg 5160 ttgctcccaa gcagaaggta aataagacct ctttgactat caggtggtga aatgctggta 5220 ggagggctct tccaggatgt aatgcagaag ctcatggcag agctattcac acttcacatc 5280 agtgctgttt cctcaccaca gaggttcctg aggtcacagt gttttccaag tctcccgtga 5340 cactgggtca gcccaacatc ctcatctgtc ttgtggacaa catctttcct cctgtggtca 5400 acatcacatg gctgagcaat gggcactcag tcacagaagg tgtttctgag accagcttcc 5460 tctccaagag tgatcattcc ttcttcaaga tcagttacct caccctcctc ccttcttctg 5520 aggagagtta tgactgcaag gtggagcact ggggcctgga caagcctctt ctgaaacact 5580 ggggtaagga tgagttccac cactttttga tgctttcttg tctgtcaagt tcagaacttc 5640 ctgcctttta ctcctatatc ccaaaacttg ttttccacac ttcatgggtt tctttctttc 5700 ttttgaaaga ataaagcaac aaaagcaaag atttattgaa aatgaaagta cacttcacag 5760 ggtgggaacg ggcctgagca taggggctca agagccactt catggttttc taatgataga 5820 cttcactctc ctccctaagc tggggacctt gagtctttgc agagccaacc ctccacccca 5880 tcccatccca cacacatgca catgagcaca ctctgctttc tgacctcaac gacttcatat 5940 ccacagagcc tgagattcca gcccctatgt cagagctcac agagactgtg gtctgcgccc 6000 tgggattgtc tgtgggcctc gtgtgcattg tggtgggcac tgtcttcatc atccgaggcc 6060 tgcgttcagt tggtgcttcc agacaccaag ggcccttgtg aatcccatcc tggaatggaa 6120 ggtaagattg agatttgtta gagctgaatc cgcagtatga gaggaaggaa agtggaggag 6180 gctgtggaca tgaatggttg aaagttgtag gggaattggg aagtggcatg atgatgacat 6240 aggagcggcc taggacccat ccatctcatg tctgtcctgt tgcaggtgca tcgccatcta 6300 caggagcaga agagtggact tgctacatga cctagcatta ttttctggcc ccatttatca 6360 tatccctttt ctcctccaaa tgtttctcct ctcacctctt ctgtgggact taaattgcta 6420 tatctgctca gagctcacaa atgcctttga attatttccc tgacttcctg atttttttct 6480 tcttaagtgt tacctactaa gagttgcctg gagtaagcca cccagctac 6529 //