Dbfetch
ID HLA02340; SV 1; standard; DNA; HUM; 6529 BP.
XX
AC HLA02340;
XX
SV HLA02340.1
XX
DT 23-SEP-2005 (Rel. 2.12.0, Created, Version 1)
DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 1)
XX
DE HLA-DQA1*05:07, Human MHC Class II sequence
XX
KW Human MHC; HLA; Class II; HLA-DQA1; Allele; HLA-DQA1*05:07;
XX
OS Homo Sapiens (human)
OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates;
OC Catarrhini; Hominidae; Homo.
XX
CC --------------------------------------------------------------------------
CC IPD-IMGT/HLA Release Version 3.55.0
CC --------------------------------------------------------------------------
CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative
CC Commons Attribution-NoDerivs License, see;
CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details.
CC --------------------------------------------------------------------------
XX
RN [1]
RP 1-6529
RX PUBMED; 16866887.
RA Lee KW, Jung YA, Oh DH;
RT "Four novel human leukocyte antigen-DQA1 alleles identified in the Korean
RT population.";
RL Tissue Antigens 68:167-172(2006).
XX
RN [2]
RP 1-6529
RX PUBMED; 30337930.
RA Suzuki S, Ranade S, Osaki K, Iyo S, Shigenari A, Ohnuki Y, Oka A, Masuya A,
RA Harting J, Baybayan P, Kitazume M, Sunaga J, Morishima S, Morishima Y,
RA Inoko H, Kulski JK, Shiina T;
RT "Reference grade characterization of polymorphisms in full-length HLA class
RT I and II genes with short-read sequencing on the ION PGM system and
RT long-reads generated by single molecule, real-time sequencing on the PacBio
RT platform.";
RL Frontiers in Immunology 9:2294(2018).
XX
CC --------------------------------------------------------------------------
CC The sequence below is the official allele sequence as approved by the
CC WHO Nomenclature Committee for Factors of the HLA System.
CC Any cross references may differ from the sequence shown below.
CC --------------------------------------------------------------------------
XX
DR EMBL; DQ178408; DQ178408.1.
DR EMBL; DQ178409; DQ178409.1.
DR EMBL; DQ178410; DQ178410.1.
DR EMBL; DQ178411; DQ178411.1.
DR EMBL; LC257847; LC257847.1.
XX
FH Key Location/Qualifiers
FH
FT source 1..6529
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT /ethnic="Asian"
FT /cell_line="BM3189"
FT /cell_line="JM36"
FT CDS join(743..824,4644..4889,5302..5583,5947..6101)
FT /codon_start=1
FT /gene="HLA-DQA1"
FT /allele="HLA-DQA1*05:07"
FT /product="MHC Class II HLA-DQA1*05:07 sequence"
FT /translation="MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPS
FT GQYTHEFDGDEQFYVDLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNS
FT TAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFL
FT SKSDHSFFKISYLTLLPSSEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCAL
FT GLSVGLVCIVVGTVFIIRGLRSVGASRHQGPL"
FT UTR 1..742
FT exon 743..824
FT /number="1"
FT intron 825..4643
FT /number="1"
FT exon 4644..4889
FT /number="2"
FT intron 4890..5301
FT /number="2"
FT exon 5302..5583
FT /number="3"
FT intron 5584..5946
FT /number="3"
FT exon 5947..6101
FT /number="4"
FT UTR 6102..6529
SQ Sequence 6529 BP; 1909 A; 1400 C; 1435 G; 1785 T; 0 other;
aaaaattcct ggaggttgta actcagaaaa tcctgaagga tgccgtataa ttgatgatgt 60
catctatcca cgaggctgct cagaaatgcc cacccctggc cagggcggtg gctcatgcct 120
gtaatctgag cactttggga ggctgagatg ggcagatcac gaattcagga gttcgagacc 180
agcctggcca acatagtgaa actctgtctc tactaaaaat acaaaaatta gccgggcgtg 240
gtggcaggtg cctgtaatcc cagctacttg ggagggtgag acaggagaat cacttgaacc 300
cgggagtcaa agtttgcagt gagccgagac catgccattg cacctcagcc tgggtgacag 360
agtgagacta catctcaaaa aaaaaaaaaa agaaagaaag aaaaaaagaa aagaaatgcc 420
cacccctctt gccactggca gacatgcaca caccagagaa gattccgatt tcgtgtcctc 480
cctctattca cagaacattt cctcaagtcc actctgagtg gaggctgcat cacaacaagg 540
ggattgccct gtctccttcc agggctctta atacaaactc ttcaactagt aactgaggtg 600
tcatcatagg ggatttttct aattagccaa aacctgactt ggcagggttt ggtttgggtg 660
tcttcagatt gccttgtctc gaggtcctca caattgctct acaactcaga acagcaactg 720
ctaaggctgc cttgggaaga ggatgatcct aaacaaagct ctgatgctgg gggcccttgc 780
cctgaccacc gtgatgagcc cctgtggagg tgaagacatt gtgggtgagt gtatgagtga 840
gggatgttct ctggagctgg aagagaggaa attgaagcaa aagagagaaa gcgatttgca 900
gagaaattgt agagatttcc taagggtccc ttcagtatta agagatttaa aaattatggc 960
tgttcctcct tcaggaaacc agagtcccaa cctactcttt ttgttatcta tgctgttggc 1020
gttcactaag gatgctattc tgtttatatt gtattcagtg actatagcct ggaggtctct 1080
atgtcattcc atcatgattg cctcaaaaat tagtgaggtt tccatcaatg gataattttt 1140
tattattaaa aatttgtgaa gtatcattct caaatttccc tgaacaactt ttgaagcttt 1200
tcggatgtct cctgtagtag cgcttggggt aaatgattcc atcaattata tactctatag 1260
atattaagaa agatgccctt ttctttctct cagacttact aacatttcca cgtgggaact 1320
ggcacaggtg gggagtgggt aaaggagtcc agcaggctga atgccttcaa caatcatttt 1380
accacatggt cctcatttac tctcagctgc ctcatatgtg tcacctcaca aataatcaaa 1440
taaaattggc atgtagctaa gctttgtaaa tagtgaaaac atgaatgtca attttatttt 1500
tacatatttc tattataggt atagcttcac atttcttttc ttttgcaaaa taaggtatcc 1560
ttttatttta aaattgagaa tttatagtag aaaaacttgg taaattaaat cattttattc 1620
tcaaattatc aacccaaatt acctgttctt caactcatct aatgaagtcc tataaaaaga 1680
aaagtgggcc agacatggtg gctcatgcct gtaatcccag cactttggga ggccgaggca 1740
ggaggatcct ttgagcccag gagttgagac cagcctgggc aacatagcaa gacctcatct 1800
ctacaaaaaa taaaaattag ccaggtgtgg tggtgcatgc ctgtggtgcc agctactcag 1860
aaggctgcag tgggaggact gcttgagtcc aggaggcgga agctgcagtg agccatgatg 1920
gcaccactac actccagcca gggcaacaga gagaaactct gtctcaaaaa gaaaaaggaa 1980
agaaagagag aaaggaagga aagaaagaaa gaaggaagga aggaaggaag gaagaagggg 2040
aagggaaggg aaggaaggga aggaaagggg aggaaagaag gaaggaaaaa agaaaaagaa 2100
agaaaaaaga aagaaaaaga aagaaagaaa gaaaagaggg aaggaaagaa agaaaaagga 2160
aggaaggaag cacagattaa ttattaatca tttggtctct cttagtcttc tctgtctttg 2220
tcatccatct atttccacct ctcttcatgc attcctttct ccctcttccc tttcaggatc 2280
catctctgac tccctgcttc tttatatgga cagtggggtt tgtaaaacaa aagttgaaaa 2340
atcagatagt taaaaggtga agtgaactgg aaggtctaaa cttccacaac cttattaacc 2400
atggctgctc ccattctgat tttgttcgac ggtggaagtt tcacctcctt ctccagagca 2460
cttggcttct ttgttccaaa tttcctttct tcaacctcac accagagtgc cctggtcagg 2520
ctcggctcat ccattaggca caacatgggc aatgcagaga accctccata ctgtaaagcc 2580
acatgagaat gttttaactc cttttaagat tagaaaaaaa tgaaatttca gagcctaaga 2640
aaatgtttta attcagccta gattgtattg tctttatacc aattcagtca taaaatacaa 2700
ttttccatat tttcatggag gaaggggccc acaaaagcaa gagtgctcag ggctcacatg 2760
tcagaatgca gccctggtca tggctgatcc tggccttctt atgattctgc tagtgtgcct 2820
gtccatcttc cccaaaatct atgtcgtcct caaatatagc aactgtaatt caaaacacgt 2880
ttgagcacac agtaagctaa gttttaagga ttcaaagatg aaaagtcatg ctgtcttccc 2940
tgcagagggt gctcagacta gtgacggaaa cggtatggga tgcaggaaag cagaaggcca 3000
ttgctgacca gggcagtgga ctcagcagag gctgaaacta tacaaatgac ttggttccag 3060
ctgggccagc agggtgacat cctccagcaa aactcggcac ccaagacaag tcccagatga 3120
aaagaaggat tgctttgtgt ttgataagga gtcaaggttt attgcaagga taaggctttg 3180
ttggtggcct gttaagacaa tccagggcag tcatactgga taaggaagaa ggtgagctgg 3240
aagaggaaca gacaaacagc cagatattga ggtggaggag ctggaggtca taacgtggtc 3300
aaaaacatgt cgatgagagg acttagctac aaagttgtta acttaagcag aaacctcaag 3360
gatgaatttt aggatttctc caggaagtcc taaaagataa tttcatttca gggagaaaaa 3420
caacaaacca ctggaaagac cagggaacat gaaaggataa tgtagtttgg tttgcttggc 3480
agatacttat gaaggatgtt ggactgtaag gctgttgata gcctcctcac agaacatgct 3540
acagtacatt gtatctgctc ccttacctac ctgactcttc cactcttcag tttgttcctt 3600
aatggtagac catgcctgat tggtgtttta cacatcccct gctatgtctg acacttgtgg 3660
atgctcagaa agtggggaag gaaggaaaga tacaacggta aaaggcttac acgtcttgac 3720
aggaatgtcc agttcggctc atttggctgg agccacattg cacggctgcc attctgctct 3780
ggcatcctca gacaagcaca ctgcccatta gaggaaaaag ggtttaattt acctgagtcc 3840
tcaagtgaat ataagtgtta agtcagaaca ctgtagacat ttagtaacct ccttcagagg 3900
aaaaaaaaag gtggggggaa atgacagaaa tccaaaaact agtagagctt ccactcttca 3960
tttcagaaga aatcagttgc tctcctctaa ggaccattac tattaacaaa acagagacct 4020
tgaaggaggc attgtttatt tattatatat tttgtaatgt tattaccatt cttgttatac 4080
tcttccttat accctacaat tgttagcaga cattatttta aattaataag atcctgcatg 4140
cttttctttt ttttaaaaaa agaaagacct ctgtgtagag tgtcctgttc tgagccagtc 4200
ctgagaggaa agaaaataca atcagtttgt tattaactga tgaaagaatt aagtgaaaga 4260
tgaatcttag gaagcagaag gaagtaaacc taatctctga ctaagaaagc taaataccat 4320
aataactcat tcattccttc ttttgttcaa ttacattatt taatcataag tccgtgatgt 4380
gccaggcact caggaaatag taaaaactgg acatgtgata ttctgccctt gtgtagcgca 4440
cattatagtg ggaaagaaag cgcaatttta accggacaac taccaacaat aagagtggag 4500
gaagcagggg ttggaaatgt ccacaggctg tgccaaagat gaagcccgta atatttgaaa 4560
gtcagtttct ttcatcattt tgtgtattaa ggttctttct tcccctgttc tccaccttcc 4620
tgcttgtcat cttcactcat cagctgacca cgtcgcctct tatggtgtaa acttgtacca 4680
gtcttacggt ccctctggcc agtacaccca tgaatttgat ggagatgagc agttctacgt 4740
ggacctgggg aggaaggaga ctgtctggtg tttgcctgtt ctcagacaat ttagatttga 4800
cccgcaattt gcactgacaa acatcgctgt cctaaaacat aacttgaaca gtctgattaa 4860
acgctccaac tctaccgctg ctaccaatgg tatgtgtcaa caattctgcc cctctttact 4920
gatttatccc ttcataccaa gtttcattat tttatttcca agaggtcccc agatcttctc 4980
atggcaattg ctgaaatttt atcatctccc atctctaaaa tcacatattc ccatgtaata 5040
caagggtctt tccattatcc attcattaaa tccttctcgg agaggtctca tcaacctcct 5100
actttattaa acatgcccac agagagaagg gcacaggaat aaagcgaagg caatgtgtcg 5160
ttgctcccaa gcagaaggta aataagacct ctttgactat caggtggtga aatgctggta 5220
ggagggctct tccaggatgt aatgcagaag ctcatggcag agctattcac acttcacatc 5280
agtgctgttt cctcaccaca gaggttcctg aggtcacagt gttttccaag tctcccgtga 5340
cactgggtca gcccaacatc ctcatctgtc ttgtggacaa catctttcct cctgtggtca 5400
acatcacatg gctgagcaat gggcactcag tcacagaagg tgtttctgag accagcttcc 5460
tctccaagag tgatcattcc ttcttcaaga tcagttacct caccctcctc ccttcttctg 5520
aggagagtta tgactgcaag gtggagcact ggggcctgga caagcctctt ctgaaacact 5580
ggggtaagga tgagttccac cactttttga tgctttcttg tctgtcaagt tcagaacttc 5640
ctgcctttta ctcctatatc ccaaaacttg ttttccacac ttcatgggtt tctttctttc 5700
ttttgaaaga ataaagcaac aaaagcaaag atttattgaa aatgaaagta cacttcacag 5760
ggtgggaacg ggcctgagca taggggctca agagccactt catggttttc taatgataga 5820
cttcactctc ctccctaagc tggggacctt gagtctttgc agagccaacc ctccacccca 5880
tcccatccca cacacatgca catgagcaca ctctgctttc tgacctcaac gacttcatat 5940
ccacagagcc tgagattcca gcccctatgt cagagctcac agagactgtg gtctgcgccc 6000
tgggattgtc tgtgggcctc gtgtgcattg tggtgggcac tgtcttcatc atccgaggcc 6060
tgcgttcagt tggtgcttcc agacaccaag ggcccttgtg aatcccatcc tggaatggaa 6120
ggtaagattg agatttgtta gagctgaatc cgcagtatga gaggaaggaa agtggaggag 6180
gctgtggaca tgaatggttg aaagttgtag gggaattggg aagtggcatg atgatgacat 6240
aggagcggcc taggacccat ccatctcatg tctgtcctgt tgcaggtgca tcgccatcta 6300
caggagcaga agagtggact tgctacatga cctagcatta ttttctggcc ccatttatca 6360
tatccctttt ctcctccaaa tgtttctcct ctcacctctt ctgtgggact taaattgcta 6420
tatctgctca gagctcacaa atgcctttga attatttccc tgacttcctg atttttttct 6480
tcttaagtgt tacctactaa gagttgcctg gagtaagcca cccagctac 6529
//