Dbfetch

Dbfetch

ID   HLA01953; SV 1; standard; DNA; HUM; 546 BP.
XX
AC   HLA01953;
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SV   HLA01953.1
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DT   25-JUN-2004 (Rel. 2.8.0, Created, Version 1)
DT   16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 1)
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DE   HLA-B*47:05, Human MHC Class I sequence (partial)
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KW   Human MHC; HLA; Class I; HLA-B; Allele; HLA-B*47:05;
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OS   Homo Sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates;
OC   Catarrhini; Hominidae; Homo.
XX
CC   --------------------------------------------------------------------------
CC   IPD-IMGT/HLA Release Version 3.55.0
CC   --------------------------------------------------------------------------
CC   Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative
CC   Commons Attribution-NoDerivs License, see;
CC   http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details.
CC   --------------------------------------------------------------------------
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RN   [1]
RP   1-546
RX   PUBMED; 15713219.
RA   Luo M, Mao X, Plummer FA;
RT   "Identification of four novel HLA-B alleles, B*1590, B*1591, B*2726, and
RT   B*4705, from an East African population by high-resolution sequence-based
RT   typing.";
RL   Tissue Antigens 65:187-191(2005).
XX
CC   --------------------------------------------------------------------------
CC   The sequence below is the official allele sequence as approved by the
CC   WHO Nomenclature Committee for Factors of the HLA System.
CC   Any cross references may differ from the sequence shown below.
CC   --------------------------------------------------------------------------
XX
DR   EMBL; AY640119; AY640119.1.
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FH   Key             Location/Qualifiers
FH
FT   source          1..546
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT                   /ethnic="African"
FT                   /cell_line="ml1362"
FT                   /cell_line="ml1546"
FT                   /cell_line="ml1673"
FT   CDS             join(<1..270,271..546)
FT                   /codon_start=3
FT                   /partial
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*47:05"
FT                   /product="MHC Class I HLA-B*47:05 sequence"
FT                   /translation="SHSMRYFYTAMSRPGRGEPRFITVGYVDDTLFVRFDSDATSPRKE
FT                   PRAPWIEQEGPEYWDRETQISKTNTQTYREDLRTLLRYYNQSEAGSHTLQNMYGCDVGP
FT                   DGRLLRGYHQDAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGEC
FT                   VEWLRRYLENGKETLQRA"
FT   exon            1..270
FT                   /number="2"
FT   exon            271..546
FT                   /number="3"
SQ   Sequence 546 BP; 113 A; 173 C; 188 G; 72 T; 0 other;
     gctcccactc catgaggtat ttctacaccg ccatgtcccg gcccggccgc ggggagcccc        60
     gcttcatcac cgtgggctac gtggacgaca cgctgttcgt gaggttcgac agcgacgcca       120
     cgagtccgag gaaggagccg cgggcgccat ggatagagca ggaggggccg gagtattggg       180
     accgggagac acagatctcc aagaccaaca cacagactta ccgagaggac ctgcggaccc       240
     tgctccgcta ctacaaccag agcgaggccg ggtctcacac cctccagaat atgtatggct       300
     gcgacgtggg gccggacggg cgcctcctcc gcgggtacca ccaggacgcc tacgacggca       360
     aggattacat cgccctgaac gaggacctga gctcctggac cgccgcggac acggcggctc       420
     agatcaccca gcgcaagtgg gaggcggccc gtgtggcgga gcagctgaga gcctacctgg       480
     agggcgagtg cgtggagtgg ctccgcagat acctggagaa cgggaaggag acgctgcagc       540
     gcgcgg                                                                  546
//